EMD-11092

Single-particle
3.11 Å
EMD-11092
3D View Gallery
Deposition: 28/05/2020
Map released: 17/02/2021
Last modified: 17/02/2021
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-11092
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3D volume (map.gz) Experimental metadata (xml)
Map-only Validation report (pdf.gz) Map-only Validation report (cif.gz) Map-only Validation report (xml.gz)
Map and PDB model 6z6f summary report (pdf.gz) Map and 6z6f FULL report (pdf.gz)
EMICSS annotations (xml)

HDAC-PC

EMD-11092

Single-particle
3.11 Å
EMD-11092
3D View Gallery
Deposition: 28/05/2020
Map released: 17/02/2021
Last modified: 17/02/2021
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Name: HDAC-PC
Complex [1]
Name: HDAC-PC
Natural source [1]
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Recombinant Expression [1]
Organism Strain Cell Plasmid
Escherichia coli - - -
Complex Portal [1]
ID Name Overlap
CPX-1884 HDA1 histone deacetylase complex 0.67
Protein [4]
LEVO
Name: Histone deacetylase HDA1
EC number: 3.5.1.98
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Molecular weight
Experimental Theoretical Method
- 74 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli - - -
LEVO
Name: Histone deacetylase HDA1
EC number: 3.5.1.98
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Molecular weight
Experimental Theoretical Method
- 76 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli - - -
LEVO
Name: HDA1 complex subunit 3,HDA1 complex subunit 3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [3]
Biological process:
histone deacetylation

Cellular location:
nucleus HDA1 complex
Natural source
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Molecular weight
Experimental Theoretical Method
- 63 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli - - -
LEVO
Name: HDA1 complex subunit 2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [13]
Biological process:
regulatory ncRNA-mediated gene silencing chromatin remodeling RNA-mediated gene silencing chromatin organization negative regulation of transcription by RNA polymerase II regulation of transcription by RNA polymerase II gene silencing by RNA histone deacetylation
Molecular function:
chromatin binding DNA binding
Cellular location:
nucleus HDA1 complex cytosol
Natural source
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Molecular weight
Experimental Theoretical Method
- 71 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli - - -
Ligand [1]
Name: ZINC ION
HET code: ZN
Number of copies: 2
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 65 Da -