0.005599 0.000000 0.000000 0.000000 0.017350 0.000000 0.000000 0.000000 0.020636 0.00000 0.00000 0.00000 Pelletier, H. Sawaya, M.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 178.602 57.637 48.459 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C9 H16 N3 O13 P3 467.157 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE non-polymer C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mn 2 54.938 MANGANESE (II) ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 35 12762 12777 10.1021/bi9529566 8841119 A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta 1996 To be Published 0353 Crystal Structures of Human DNA Polymerase Beta Complexed with Nicked and Gapped DNA Substrates To be Published 0353 The Role of Thumb Movement and Template Bending in Polymerase Fidelity US Biochemistry BICHAW 0033 0006-2960 35 12742 Crystal Structures of Human DNA Polymerase Beta Complexed with DNA; Implications for Catalytic Mechanism, Processivity, and Fidelity 1996 US Biochemistry BICHAW 0033 0006-2960 35 12778 Characterization of the Metal Ion-Binding HHH Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis 1996 US Science SCIEAS 0038 0036-8075 266 2025 Polymerase Structures and Mechanism 1994 US Science SCIEAS 0038 0036-8075 264 1891 Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP 1994 US Science SCIEAS 0038 0036-8075 264 1930 Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism 1994 10.2210/pdb9icr/pdb pdb_00009icr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.00 1 AREA DETECTOR 1995-03-02 SDMS GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 2088.397 DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') 1 syn polymer 1833.242 DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') 1 syn polymer 38241.672 PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)) 1 man polymer 54.938 MANGANESE (II) ION 2 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 467.157 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE 1 syn non-polymer 18.015 water 141 nat water no no (DC)(DA)(DT)(DC)(DT)(DG)(DT) CATCTGT T polydeoxyribonucleotide no no (DC)(DA)(DG)(DA)(DT)(DG) CAGATG P polydeoxyribonucleotide no no MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 3.00 59.3000 6.5 THIS ENTRY DESCRIBES THE STRUCTURE THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA COMPLEXED WITH 6 BASE PAIRS OF DNA (SEE ENTRY 9ICW AND REFERENCE 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DCTP, 1 MILLIMOLAR MNCL2, 5 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR THIS STRUCTURE. -8.949 1 19 T 2 P 6 4.963 T_DC2:DG6_P 1 -8.751 0.387 -0.082 -0.487 -2.154 1 20 T 3 P 5 4.769 T_DA3:DT5_P 2 -6.745 0.764 0.048 -0.457 6.194 1 20 T 4 P 4 10.202 T_DT4:DA4_P 3 -11.763 -0.653 0.330 -0.440 -8.339 1 19 T 5 P 3 3.207 T_DC5:DG3_P 4 -8.831 0.490 0.387 -0.362 -6.781 1 20 T 6 P 2 -3.070 T_DT6:DA2_P 5 -13.565 -0.189 0.070 -0.004 13.583 1 19 T 7 P 1 12.361 T_DG7:DC1_P 6 -17.572 -0.007 0.535 -0.038 3.492 31.505 T T 2 3 17.503 P P 6 5 3.373 9.367 -0.239 0.908 TT_DC2DA3:DT5DG6_PP 1 -0.112 0.209 30.113 -0.205 0.418 2.944 29.208 T T 3 4 8.465 P P 5 4 3.112 4.252 0.159 -0.861 TT_DA3DT4:DA4DT5_PP 2 -1.587 3.159 28.861 -2.568 -0.637 3.561 44.700 T T 4 5 10.439 P P 4 3 3.636 7.902 -0.013 -0.140 TT_DT4DC5:DG3DA4_PP 3 -0.629 0.831 44.027 -0.985 -0.047 3.242 27.499 T T 5 6 2.912 P P 3 2 3.325 1.382 -0.600 -0.191 TT_DC5DT6:DA2DG3_PP 4 2.581 -5.441 27.345 -0.744 1.901 3.016 30.031 T T 6 7 14.782 P P 2 1 2.971 7.553 0.978 1.249 TT_DT6DG7:DC1DA2_PP 5 -4.392 8.596 28.759 0.957 -2.732 database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1996-01-04 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CACL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NO 5'-PHOSPHATE) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CDCL2 (1 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND MGCL2 (50 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND NICL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) AND MNCL2 (0.5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND MNCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CUCL2 (0.1 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA (NON GAPPED DNA ONLY) DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH 7.5 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 6.5 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 7.5 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND MGCL2 (15 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND MGCL2 (75 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND MGCL2 (15 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND NACL (75 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR) DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND ZNCL2 (0.02 MILLIMOLAR) BNL Y NDB 1996-01-04 REL REL MN MANGANESE (II) ION NA SODIUM ION DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HOH water A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: 5'-CATCTGTTGTAAGCGCCG-3' (18-MER), 5'-CGGCGC-3' (6-MER), AND 5'-PO4-CAGATG-3' (6-MER), RESPECTIVELY, WHERE "5'-PO4" INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO THAT WHAT WAS ORIGINALLY INTENDED TO BE THE 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE SEQRES SECTION BELOW. 9ICK PDB experimental model MN 339 4 MN MN 339 A MN 340 4 MN MN 340 A NA 341 5 NA NA 341 A NA 342 5 NA NA 342 A DCP 338 6 DCP DCP 338 A HOH 517 7 HOH HOH 517 T HOH 525 7 HOH HOH 525 T HOH 526 7 HOH HOH 526 T HOH 527 7 HOH HOH 527 T HOH 537 7 HOH HOH 537 T HOH 540 7 HOH HOH 540 T HOH 546 7 HOH HOH 546 T HOH 547 7 HOH HOH 547 T HOH 564 7 HOH HOH 564 T HOH 573 7 HOH HOH 573 T HOH 594 7 HOH HOH 594 T HOH 599 7 HOH HOH 599 T HOH 617 7 HOH HOH 617 T HOH 634 7 HOH HOH 634 T HOH 655 7 HOH HOH 655 T HOH 510 7 HOH HOH 510 P HOH 511 7 HOH HOH 511 P HOH 524 7 HOH HOH 524 P HOH 534 7 HOH HOH 534 P HOH 539 7 HOH HOH 539 P HOH 566 7 HOH HOH 566 P HOH 567 7 HOH HOH 567 P HOH 568 7 HOH HOH 568 P HOH 570 7 HOH HOH 570 P HOH 571 7 HOH HOH 571 P HOH 572 7 HOH HOH 572 P HOH 595 7 HOH HOH 595 P HOH 598 7 HOH HOH 598 P HOH 612 7 HOH HOH 612 P HOH 613 7 HOH HOH 613 P HOH 614 7 HOH HOH 614 P HOH 615 7 HOH HOH 615 P HOH 635 7 HOH HOH 635 P HOH 648 7 HOH HOH 648 P HOH 501 7 HOH HOH 501 A HOH 502 7 HOH HOH 502 A HOH 503 7 HOH HOH 503 A HOH 505 7 HOH HOH 505 A HOH 506 7 HOH HOH 506 A HOH 507 7 HOH HOH 507 A HOH 508 7 HOH HOH 508 A HOH 509 7 HOH HOH 509 A HOH 512 7 HOH HOH 512 A HOH 513 7 HOH HOH 513 A HOH 514 7 HOH HOH 514 A HOH 515 7 HOH HOH 515 A HOH 516 7 HOH HOH 516 A HOH 518 7 HOH HOH 518 A HOH 519 7 HOH HOH 519 A HOH 520 7 HOH HOH 520 A HOH 521 7 HOH HOH 521 A HOH 523 7 HOH HOH 523 A HOH 528 7 HOH HOH 528 A HOH 529 7 HOH HOH 529 A HOH 530 7 HOH HOH 530 A HOH 531 7 HOH HOH 531 A HOH 533 7 HOH HOH 533 A HOH 535 7 HOH HOH 535 A HOH 536 7 HOH HOH 536 A HOH 538 7 HOH HOH 538 A HOH 541 7 HOH HOH 541 A HOH 542 7 HOH HOH 542 A HOH 543 7 HOH HOH 543 A HOH 544 7 HOH HOH 544 A HOH 545 7 HOH HOH 545 A HOH 548 7 HOH HOH 548 A HOH 549 7 HOH HOH 549 A HOH 550 7 HOH HOH 550 A HOH 551 7 HOH HOH 551 A HOH 552 7 HOH HOH 552 A HOH 553 7 HOH HOH 553 A HOH 554 7 HOH HOH 554 A HOH 555 7 HOH HOH 555 A HOH 556 7 HOH HOH 556 A HOH 557 7 HOH HOH 557 A HOH 558 7 HOH HOH 558 A HOH 560 7 HOH HOH 560 A HOH 561 7 HOH HOH 561 A HOH 562 7 HOH HOH 562 A HOH 563 7 HOH HOH 563 A HOH 565 7 HOH HOH 565 A HOH 575 7 HOH HOH 575 A HOH 576 7 HOH HOH 576 A HOH 577 7 HOH HOH 577 A HOH 578 7 HOH HOH 578 A HOH 579 7 HOH HOH 579 A HOH 580 7 HOH HOH 580 A HOH 581 7 HOH HOH 581 A HOH 582 7 HOH HOH 582 A HOH 583 7 HOH HOH 583 A HOH 584 7 HOH HOH 584 A HOH 585 7 HOH HOH 585 A HOH 589 7 HOH HOH 589 A HOH 590 7 HOH HOH 590 A HOH 591 7 HOH HOH 591 A HOH 592 7 HOH HOH 592 A HOH 593 7 HOH HOH 593 A HOH 596 7 HOH HOH 596 A HOH 597 7 HOH HOH 597 A HOH 600 7 HOH HOH 600 A HOH 601 7 HOH HOH 601 A HOH 603 7 HOH HOH 603 A HOH 604 7 HOH HOH 604 A HOH 606 7 HOH HOH 606 A HOH 607 7 HOH HOH 607 A HOH 608 7 HOH HOH 608 A HOH 610 7 HOH HOH 610 A HOH 611 7 HOH HOH 611 A HOH 616 7 HOH HOH 616 A HOH 618 7 HOH HOH 618 A HOH 620 7 HOH HOH 620 A HOH 621 7 HOH HOH 621 A HOH 622 7 HOH HOH 622 A HOH 623 7 HOH HOH 623 A HOH 624 7 HOH HOH 624 A HOH 625 7 HOH HOH 625 A HOH 626 7 HOH HOH 626 A HOH 627 7 HOH HOH 627 A HOH 628 7 HOH HOH 628 A HOH 629 7 HOH HOH 629 A HOH 630 7 HOH HOH 630 A HOH 637 7 HOH HOH 637 A HOH 638 7 HOH HOH 638 A HOH 639 7 HOH HOH 639 A HOH 640 7 HOH HOH 640 A HOH 641 7 HOH HOH 641 A HOH 642 7 HOH HOH 642 A HOH 643 7 HOH HOH 643 A HOH 644 7 HOH HOH 644 A HOH 645 7 HOH HOH 645 A HOH 646 7 HOH HOH 646 A HOH 647 7 HOH HOH 647 A HOH 649 7 HOH HOH 649 A HOH 650 7 HOH HOH 650 A HOH 651 7 HOH HOH 651 A HOH 652 7 HOH HOH 652 A HOH 653 7 HOH HOH 653 A HOH 654 7 HOH HOH 654 A HOH 656 7 HOH HOH 656 A HOH 657 7 HOH HOH 657 A HOH 658 7 HOH HOH 658 A C 2 n 1 DC 2 T A 3 n 2 DA 3 T T 4 n 3 DT 4 T C 5 n 4 DC 5 T T 6 n 5 DT 6 T G 7 n 6 DG 7 T T 8 n 7 DT 8 T C 1 n 1 DC 1 P A 2 n 2 DA 2 P G 3 n 3 DG 3 P A 4 n 4 DA 4 P T 5 n 5 DT 5 P G 6 n 6 DG 6 P n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A GLU 9 n 9 GLU 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A ASN 12 n 12 ASN 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A ILE 15 n 15 ILE 15 A THR 16 n 16 THR 16 A ASP 17 n 17 ASP 17 A MET 18 n 18 MET 18 A LEU 19 n 19 LEU 19 A THR 20 n 20 THR 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A PHE 25 n 25 PHE 25 A GLU 26 n 26 GLU 26 A LYS 27 n 27 LYS 27 A ASN 28 n 28 ASN 28 A VAL 29 n 29 VAL 29 A SER 30 n 30 SER 30 A GLN 31 n 31 GLN 31 A ALA 32 n 32 ALA 32 A ILE 33 n 33 ILE 33 A HIS 34 n 34 HIS 34 A LYS 35 n 35 LYS 35 A TYR 36 n 36 TYR 36 A ASN 37 n 37 ASN 37 A ALA 38 n 38 ALA 38 A TYR 39 n 39 TYR 39 A ARG 40 n 40 ARG 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A PRO 50 n 50 PRO 50 A HIS 51 n 51 HIS 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A GLY 56 n 56 GLY 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A VAL 65 n 65 VAL 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A LYS 68 n 68 LYS 68 A ILE 69 n 69 ILE 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A LYS 72 n 72 LYS 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A LEU 77 n 77 LEU 77 A ALA 78 n 78 ALA 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A LYS 87 n 87 LYS 87 A ILE 88 n 88 ILE 88 A ARG 89 n 89 ARG 89 A GLN 90 n 90 GLN 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A THR 93 n 93 THR 93 A SER 94 n 94 SER 94 A SER 95 n 95 SER 95 A SER 96 n 96 SER 96 A ILE 97 n 97 ILE 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A LEU 100 n 100 LEU 100 A THR 101 n 101 THR 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A SER 104 n 104 SER 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A PRO 108 n 108 PRO 108 A SER 109 n 109 SER 109 A ALA 110 n 110 ALA 110 A ALA 111 n 111 ALA 111 A ARG 112 n 112 ARG 112 A LYS 113 n 113 LYS 113 A PHE 114 n 114 PHE 114 A VAL 115 n 115 VAL 115 A ASP 116 n 116 ASP 116 A GLU 117 n 117 GLU 117 A GLY 118 n 118 GLY 118 A ILE 119 n 119 ILE 119 A LYS 120 n 120 LYS 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A ASN 128 n 128 ASN 128 A GLU 129 n 129 GLU 129 A ASP 130 n 130 ASP 130 A LYS 131 n 131 LYS 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A HIS 134 n 134 HIS 134 A HIS 135 n 135 HIS 135 A GLN 136 n 136 GLN 136 A ARG 137 n 137 ARG 137 A ILE 138 n 138 ILE 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A TYR 142 n 142 TYR 142 A PHE 143 n 143 PHE 143 A GLY 144 n 144 GLY 144 A ASP 145 n 145 ASP 145 A PHE 146 n 146 PHE 146 A GLU 147 n 147 GLU 147 A LYS 148 n 148 LYS 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A PRO 151 n 151 PRO 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A GLU 154 n 154 GLU 154 A MET 155 n 155 MET 155 A LEU 156 n 156 LEU 156 A GLN 157 n 157 GLN 157 A MET 158 n 158 MET 158 A GLN 159 n 159 GLN 159 A ASP 160 n 160 ASP 160 A ILE 161 n 161 ILE 161 A VAL 162 n 162 VAL 162 A LEU 163 n 163 LEU 163 A ASN 164 n 164 ASN 164 A GLU 165 n 165 GLU 165 A VAL 166 n 166 VAL 166 A LYS 167 n 167 LYS 167 A LYS 168 n 168 LYS 168 A VAL 169 n 169 VAL 169 A ASP 170 n 170 ASP 170 A SER 171 n 171 SER 171 A GLU 172 n 172 GLU 172 A TYR 173 n 173 TYR 173 A ILE 174 n 174 ILE 174 A ALA 175 n 175 ALA 175 A THR 176 n 176 THR 176 A VAL 177 n 177 VAL 177 A CYS 178 n 178 CYS 178 A GLY 179 n 179 GLY 179 A SER 180 n 180 SER 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A ARG 183 n 183 ARG 183 A GLY 184 n 184 GLY 184 A ALA 185 n 185 ALA 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A SER 188 n 188 SER 188 A GLY 189 n 189 GLY 189 A ASP 190 n 190 ASP 190 A MET 191 n 191 MET 191 A ASP 192 n 192 ASP 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A LEU 195 n 195 LEU 195 A THR 196 n 196 THR 196 A HIS 197 n 197 HIS 197 A PRO 198 n 198 PRO 198 A SER 199 n 199 SER 199 A PHE 200 n 200 PHE 200 A THR 201 n 201 THR 201 A SER 202 n 202 SER 202 A GLU 203 n 203 GLU 203 A SER 204 n 204 SER 204 A THR 205 n 205 THR 205 A LYS 206 n 206 LYS 206 A GLN 207 n 207 GLN 207 A PRO 208 n 208 PRO 208 A LYS 209 n 209 LYS 209 A LEU 210 n 210 LEU 210 A LEU 211 n 211 LEU 211 A HIS 212 n 212 HIS 212 A GLN 213 n 213 GLN 213 A VAL 214 n 214 VAL 214 A VAL 215 n 215 VAL 215 A GLU 216 n 216 GLU 216 A GLN 217 n 217 GLN 217 A LEU 218 n 218 LEU 218 A GLN 219 n 219 GLN 219 A LYS 220 n 220 LYS 220 A VAL 221 n 221 VAL 221 A HIS 222 n 222 HIS 222 A PHE 223 n 223 PHE 223 A ILE 224 n 224 ILE 224 A THR 225 n 225 THR 225 A ASP 226 n 226 ASP 226 A THR 227 n 227 THR 227 A LEU 228 n 228 LEU 228 A SER 229 n 229 SER 229 A LYS 230 n 230 LYS 230 A GLY 231 n 231 GLY 231 A GLU 232 n 232 GLU 232 A THR 233 n 233 THR 233 A LYS 234 n 234 LYS 234 A PHE 235 n 235 PHE 235 A MET 236 n 236 MET 236 A GLY 237 n 237 GLY 237 A VAL 238 n 238 VAL 238 A CYS 239 n 239 CYS 239 A GLN 240 n 240 GLN 240 A LEU 241 n 241 LEU 241 A PRO 242 n 242 PRO 242 A SER 243 n 243 SER 243 A LYS 244 n 244 LYS 244 A ASN 245 n 245 ASN 245 A ASP 246 n 246 ASP 246 A GLU 247 n 247 GLU 247 A LYS 248 n 248 LYS 248 A GLU 249 n 249 GLU 249 A TYR 250 n 250 TYR 250 A PRO 251 n 251 PRO 251 A HIS 252 n 252 HIS 252 A ARG 253 n 253 ARG 253 A ARG 254 n 254 ARG 254 A ILE 255 n 255 ILE 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A ARG 258 n 258 ARG 258 A LEU 259 n 259 LEU 259 A ILE 260 n 260 ILE 260 A PRO 261 n 261 PRO 261 A LYS 262 n 262 LYS 262 A ASP 263 n 263 ASP 263 A GLN 264 n 264 GLN 264 A TYR 265 n 265 TYR 265 A TYR 266 n 266 TYR 266 A CYS 267 n 267 CYS 267 A GLY 268 n 268 GLY 268 A VAL 269 n 269 VAL 269 A LEU 270 n 270 LEU 270 A TYR 271 n 271 TYR 271 A PHE 272 n 272 PHE 272 A THR 273 n 273 THR 273 A GLY 274 n 274 GLY 274 A SER 275 n 275 SER 275 A ASP 276 n 276 ASP 276 A ILE 277 n 277 ILE 277 A PHE 278 n 278 PHE 278 A ASN 279 n 279 ASN 279 A LYS 280 n 280 LYS 280 A ASN 281 n 281 ASN 281 A MET 282 n 282 MET 282 A ARG 283 n 283 ARG 283 A ALA 284 n 284 ALA 284 A HIS 285 n 285 HIS 285 A ALA 286 n 286 ALA 286 A LEU 287 n 287 LEU 287 A GLU 288 n 288 GLU 288 A LYS 289 n 289 LYS 289 A GLY 290 n 290 GLY 290 A PHE 291 n 291 PHE 291 A THR 292 n 292 THR 292 A ILE 293 n 293 ILE 293 A ASN 294 n 294 ASN 294 A GLU 295 n 295 GLU 295 A TYR 296 n 296 TYR 296 A THR 297 n 297 THR 297 A ILE 298 n 298 ILE 298 A ARG 299 n 299 ARG 299 A PRO 300 n 300 PRO 300 A LEU 301 n 301 LEU 301 A GLY 302 n 302 GLY 302 A VAL 303 n 303 VAL 303 A THR 304 n 304 THR 304 A GLY 305 n 305 GLY 305 A VAL 306 n 306 VAL 306 A ALA 307 n 307 ALA 307 A GLY 308 n 308 GLY 308 A GLU 309 n 309 GLU 309 A PRO 310 n 310 PRO 310 A LEU 311 n 311 LEU 311 A PRO 312 n 312 PRO 312 A VAL 313 n 313 VAL 313 A ASP 314 n 314 ASP 314 A SER 315 n 315 SER 315 A GLU 316 n 316 GLU 316 A LYS 317 n 317 LYS 317 A ASP 318 n 318 ASP 318 A ILE 319 n 319 ILE 319 A PHE 320 n 320 PHE 320 A ASP 321 n 321 ASP 321 A TYR 322 n 322 TYR 322 A ILE 323 n 323 ILE 323 A GLN 324 n 324 GLN 324 A TRP 325 n 325 TRP 325 A LYS 326 n 326 LYS 326 A TYR 327 n 327 TYR 327 A ARG 328 n 328 ARG 328 A GLU 329 n 329 GLU 329 A PRO 330 n 330 PRO 330 A LYS 331 n 331 LYS 331 A ASP 332 n 332 ASP 332 A ARG 333 n 333 ARG 333 A SER 334 n 334 SER 334 A GLU 335 n 335 GLU 335 A 0.1580000 author_defined_assembly 3 trimeric P DG 6 B OP1 DG 6 1_555 A NA 341 F NA NA 1_555 A THR 101 C O THR 101 1_555 169.9 P DG 6 B OP1 DG 6 1_555 A NA 341 F NA NA 1_555 A VAL 103 C O VAL 103 1_555 84.0 A THR 101 C O THR 101 1_555 A NA 341 F NA NA 1_555 A VAL 103 C O VAL 103 1_555 105.7 P DG 6 B OP1 DG 6 1_555 A NA 341 F NA NA 1_555 A ILE 106 C O ILE 106 1_555 83.0 A THR 101 C O THR 101 1_555 A NA 341 F NA NA 1_555 A ILE 106 C O ILE 106 1_555 92.8 A VAL 103 C O VAL 103 1_555 A NA 341 F NA NA 1_555 A ILE 106 C O ILE 106 1_555 96.3 P DG 6 B OP1 DG 6 1_555 A NA 341 F NA NA 1_555 A HOH 601 K O HOH 1_555 107.9 A THR 101 C O THR 101 1_555 A NA 341 F NA NA 1_555 A HOH 601 K O HOH 1_555 69.6 A VAL 103 C O VAL 103 1_555 A NA 341 F NA NA 1_555 A HOH 601 K O HOH 1_555 123.0 A ILE 106 C O ILE 106 1_555 A NA 341 F NA NA 1_555 A HOH 601 K O HOH 1_555 139.7 A LYS 60 C O LYS 60 3_547 A NA 342 G NA NA 1_555 A LEU 62 C O LEU 62 3_547 68.2 A ASP 190 C OD1 ASP 190 1_555 A MN 339 D MN MN 1_555 A DCP 338 H O1A DCP 1_555 88.2 A ASP 190 C OD1 ASP 190 1_555 A MN 339 D MN MN 1_555 A DCP 338 H O2B DCP 1_555 169.5 A DCP 338 H O1A DCP 1_555 A MN 339 D MN MN 1_555 A DCP 338 H O2B DCP 1_555 81.8 A ASP 190 C OD1 ASP 190 1_555 A MN 339 D MN MN 1_555 A DCP 338 H O1G DCP 1_555 121.4 A DCP 338 H O1A DCP 1_555 A MN 339 D MN MN 1_555 A DCP 338 H O1G DCP 1_555 123.0 A DCP 338 H O2B DCP 1_555 A MN 339 D MN MN 1_555 A DCP 338 H O1G DCP 1_555 67.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 174 C O ILE 174 A N THR 196 C N THR 196 A O MET 191 C O MET 191 A N ASP 256 C N ASP 256 A O ARG 253 C O ARG 253 A N CYS 239 C N CYS 239 A O VAL 238 C O VAL 238 A N ASP 226 C N ASP 226 A O THR 292 C O THR 292 A N ARG 299 C N ARG 299 1 T C5' DT 8 A C5' DT 7 1 Y 1 T C4' DT 8 A C4' DT 7 1 Y 1 T O4' DT 8 A O4' DT 7 1 Y 1 T C3' DT 8 A C3' DT 7 1 Y 1 T O3' DT 8 A O3' DT 7 1 Y 1 T C2' DT 8 A C2' DT 7 1 Y 1 T C1' DT 8 A C1' DT 7 1 Y 1 T N1 DT 8 A N1 DT 7 1 Y 1 T C2 DT 8 A C2 DT 7 1 Y 1 T O2 DT 8 A O2 DT 7 1 Y 1 T N3 DT 8 A N3 DT 7 1 Y 1 T C4 DT 8 A C4 DT 7 1 Y 1 T O4 DT 8 A O4 DT 7 1 Y 1 T C5 DT 8 A C5 DT 7 1 Y 1 T C7 DT 8 A C7 DT 7 1 Y 1 T C6 DT 8 A C6 DT 7 1 Y 1 A N1 DCP 338 H N1 DCP 1 1 N 1 A C2 DCP 338 H C2 DCP 1 1 N 1 A N3 DCP 338 H N3 DCP 1 1 N 1 A C4 DCP 338 H C4 DCP 1 1 N 1 A C5 DCP 338 H C5 DCP 1 1 N 1 A C6 DCP 338 H C6 DCP 1 1 N 1 A O2 DCP 338 H O2 DCP 1 1 N 1 A N4 DCP 338 H N4 DCP 1 1 N 1 A MET 1 C MET 1 1 Y 1 A SER 2 C SER 2 1 Y 1 A LYS 3 C LYS 3 1 Y 1 A ARG 4 C ARG 4 1 Y 1 A LYS 5 C LYS 5 1 Y 1 A ALA 6 C ALA 6 1 Y 1 A PRO 7 C PRO 7 1 Y 1 A GLN 8 C GLN 8 1 Y 1 A GLU 9 C GLU 9 0 Y 1 A ASP 246 C ASP 246 0 Y 1 A GLU 247 C GLU 247 0 Y 1 A CA ASP 246 PLANAR 1 3.91 0.30 108.30 112.21 T T T O4' C1' N1 DC DC DC 2 2 2 N 1 -15.53 1.20 120.80 105.27 T T T C6 N1 C1' DC DC DC 2 2 2 N 1 15.88 1.10 118.80 134.68 T T T C2 N1 C1' DC DC DC 2 2 2 N 1 1.87 0.30 108.30 110.17 T T T O4' C1' N1 DT DT DT 4 4 4 N 1 -23.99 1.50 120.40 96.41 T T T C6 N1 C1' DT DT DT 4 4 4 N 1 24.24 1.60 118.20 142.44 T T T C2 N1 C1' DT DT DT 4 4 4 N 1 3.74 0.30 108.30 112.04 T T T O4' C1' N1 DC DC DC 5 5 5 N 1 -16.70 1.20 120.80 104.10 T T T C6 N1 C1' DC DC DC 5 5 5 N 1 17.71 1.10 118.80 136.51 T T T C2 N1 C1' DC DC DC 5 5 5 N 1 -5.61 0.80 109.40 103.79 T T T O5' C5' C4' DT DT DT 6 6 6 N 1 -5.60 0.80 102.40 96.80 T T T C3' C2' C1' DT DT DT 6 6 6 N 1 -13.61 1.50 120.40 106.79 T T T C6 N1 C1' DT DT DT 6 6 6 N 1 11.31 1.60 118.20 129.51 T T T C2 N1 C1' DT DT DT 6 6 6 N 1 2.81 0.30 108.30 111.11 P P P O4' C1' N1 DC DC DC 1 1 1 N 1 -14.66 1.20 120.80 106.14 P P P C6 N1 C1' DC DC DC 1 1 1 N 1 14.60 1.10 118.80 133.40 P P P C2 N1 C1' DC DC DC 1 1 1 N 1 10.28 1.20 119.70 129.98 P P P C3' O3' P DC DC DA 1 1 2 Y 1 -5.01 0.40 104.50 99.49 P P P O4' C4' C3' DA DA DA 2 2 2 N 1 -4.35 0.70 102.20 97.85 P P P C4' C3' C2' DA DA DA 2 2 2 N 1 -6.07 0.80 109.40 103.33 P P P O5' C5' C4' DA DA DA 4 4 4 N 1 -4.94 0.70 108.00 103.06 P P P O4' C1' N9 DA DA DA 4 4 4 N 1 11.13 1.20 119.70 130.83 P P P C3' O3' P DA DA DT 4 4 5 Y 1 -3.95 0.60 122.30 118.35 P P P N3 C2 O2 DT DT DT 5 5 5 N 1 -24.69 1.50 120.40 95.71 P P P C6 N1 C1' DT DT DT 5 5 5 N 1 24.45 1.60 118.20 142.65 P P P C2 N1 C1' DT DT DT 5 5 5 N 1 -4.34 0.70 108.00 103.66 P P P O4' C1' N9 DG DG DG 6 6 6 N 1 10.12 1.30 127.00 137.12 P P P C8 N9 C1' DG DG DG 6 6 6 N 1 -11.11 1.30 126.50 115.39 P P P C4 N9 C1' DG DG DG 6 6 6 N 1 -10.87 1.70 113.60 102.73 A A A CA CB CG HIS HIS HIS 34 34 34 N 1 9.95 1.50 110.10 120.05 A A A CB CA C ALA ALA ALA 43 43 43 N 1 8.93 1.40 110.10 119.03 A A A N CA CB ALA ALA ALA 43 43 43 N 1 10.79 1.50 119.30 130.09 A A A C N CA TYR PRO PRO 49 50 50 Y 1 -14.64 2.10 128.40 113.76 A A A C N CD TYR PRO PRO 49 50 50 Y 1 6.12 0.90 118.30 124.42 A A A CB CG OD1 ASP ASP ASP 74 74 74 N 1 -7.06 0.90 118.30 111.24 A A A CB CG OD2 ASP ASP ASP 92 92 92 N 1 -6.63 0.90 118.30 111.67 A A A CB CG OD2 ASP ASP ASP 116 116 116 N 1 8.17 0.90 118.30 126.47 A A A CB CG OD1 ASP ASP ASP 124 124 124 N 1 -6.46 0.90 118.30 111.84 A A A CB CG OD2 ASP ASP ASP 124 124 124 N 1 3.04 0.50 120.30 123.34 A A A NE CZ NH1 ARG ARG ARG 126 126 126 N 1 11.37 1.80 110.60 121.97 A A A N CA CB ARG ARG ARG 152 152 152 N 1 -6.21 0.90 118.30 112.09 A A A CB CG OD2 ASP ASP ASP 160 160 160 N 1 4.92 0.50 120.30 125.22 A A A NE CZ NH1 ARG ARG ARG 182 182 182 N 1 3.89 0.50 120.30 124.19 A A A NE CZ NH1 ARG ARG ARG 183 183 183 N 1 5.44 0.90 118.30 123.74 A A A CB CG OD1 ASP ASP ASP 192 192 192 N 1 -6.62 0.90 118.30 111.68 A A A CB CG OD2 ASP ASP ASP 192 192 192 N 1 -5.79 0.90 118.30 112.51 A A A CB CG OD2 ASP ASP ASP 226 226 226 N 1 4.35 0.50 120.30 124.65 A A A NE CZ NH1 ARG ARG ARG 253 253 253 N 1 5.85 0.90 118.30 124.15 A A A CB CG OD1 ASP ASP ASP 256 256 256 N 1 -7.72 0.90 118.30 110.58 A A A CB CG OD2 ASP ASP ASP 256 256 256 N 1 -5.92 0.90 118.30 112.38 A A A CB CG OD2 ASP ASP ASP 263 263 263 N 1 -11.46 1.90 113.40 101.94 A A A CA CB CG TYR TYR TYR 271 271 271 N 1 -4.04 0.60 121.00 116.96 A A A CB CG CD1 TYR TYR TYR 271 271 271 N 1 -13.82 2.00 110.40 96.58 A A A CB CA C TYR TYR TYR 296 296 296 N 1 -17.42 2.10 128.40 110.98 A A A C N CD LEU PRO PRO 311 312 312 Y 1 -5.48 0.90 118.30 112.82 A A A CB CG OD1 ASP ASP ASP 314 314 314 N 1 6.12 0.90 118.30 124.42 A A A CB CG OD1 ASP ASP ASP 318 318 318 N 1 -5.92 0.90 118.30 112.38 A A A CB CG OD2 ASP ASP ASP 318 318 318 N 1 -4.57 0.60 121.00 116.43 A A A CB CG CD1 TYR TYR TYR 322 322 322 N 1 14.64 2.30 111.70 126.34 A A A CD CE NZ LYS LYS LYS 326 326 326 N 1 -3.30 0.50 120.30 117.00 A A A NE CZ NH2 ARG ARG ARG 328 328 328 N 1 T T C2 N3 DC DC 5 5 0.050 0.008 1.353 1.403 N 1 T T O3' C3' DT DT 6 6 -0.041 0.006 1.419 1.378 N 1 T T N9 C4 DG DG 7 7 -0.051 0.008 1.375 1.324 N 1 P P O3' C3' DC DC 1 1 -0.045 0.006 1.419 1.374 N 1 P P O3' C3' DT DT 5 5 -0.056 0.006 1.419 1.363 N 1 P P C1' N1 DT DT 5 5 0.111 0.013 1.488 1.599 N 1 P P N1 C2 DT DT 5 5 0.086 0.008 1.376 1.462 N 1 P P C4 C5 DT DT 5 5 0.054 0.009 1.445 1.499 N 1 P P O3' C3' DG DG 6 6 -0.051 0.006 1.419 1.368 N 1 A A CD OE1 GLU GLU 21 21 0.086 0.011 1.252 1.338 N 1 A A CD OE1 GLU GLU 58 58 0.078 0.011 1.252 1.330 N 1 A A CD OE1 GLU GLU 71 71 0.075 0.011 1.252 1.327 N 1 A A CD OE1 GLU GLU 75 75 0.075 0.011 1.252 1.327 N 1 A A CD OE1 GLU GLU 86 86 0.081 0.011 1.252 1.333 N 1 A A CD OE1 GLU GLU 186 186 0.071 0.011 1.252 1.323 N 1 A A CD OE1 GLU GLU 203 203 0.083 0.011 1.252 1.335 N 1 A A CD OE2 GLU GLU 249 249 0.084 0.011 1.252 1.336 N 1 A A CD OE2 GLU GLU 288 288 0.070 0.011 1.252 1.322 N 1 A A CD OE2 GLU GLU 309 309 0.066 0.011 1.252 1.318 N 1 A A CD OE2 GLU GLU 316 316 0.073 0.011 1.252 1.325 N 1 A A CD OE2 GLU GLU 329 329 0.076 0.011 1.252 1.328 N 1 A A NH1 CB ARG GLU 83 117 2.14 1_555 3_558 1 A THR 10 -178.10 -9.02 1 A VAL 29 -90.50 -63.60 1 A SER 30 -79.42 -168.29 1 A ALA 32 -37.05 59.73 1 A PRO 50 -57.87 -7.85 1 A GLN 90 -99.88 -71.31 1 A ASP 91 -20.84 112.73 1 A CYS 178 -88.28 -159.61 1 A ALA 185 7.81 127.97 1 A SER 202 -14.88 -63.82 1 A SER 204 -26.60 115.45 1 A LYS 206 31.18 -179.23 1 A GLN 207 160.48 84.59 1 A LYS 244 -43.62 -112.52 1 A ASN 245 -102.87 59.67 1 A ASP 246 12.90 107.28 1 A GLU 247 172.72 -31.74 1 A ASP 263 -64.48 5.23 1 A GLN 264 -145.38 14.13 1 A TYR 265 -50.68 -74.13 1 A LYS 289 -43.43 -2.15 1 A THR 304 -56.32 -5.63 1 A ALA 307 165.83 155.14 1 A GLU 309 116.78 95.12 1 A PRO 310 -44.25 99.05 1 A SER 315 175.70 170.74 1 A SER 334 -48.59 -73.64 0.1580000 3.000 20.000 9346 88.000 1 0.000 DIFFERENCE FOURIER 9ICK STANDARD TNT MOEWS 482.7 0.610 3.000 20.000 141 3036 24 248 2623 0.020 2971 0.020 2.900 4012 3.000 18.70 1781 0 0.014 73 0.020 0.006 393 0.020 6.300 2946 6.000 0.026 171 0.020 3.000 20.000 9ICR 9346 0.000 5.1000000 1 2.000 88.000 3.000 3.100 16.6000000 1.500 81.00 refinement TNT 5-D data reduction SDMS data scaling SDMS phasing TNT V. 5-D DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 6 N N 7 N N 7 N N 7 N N A GLY 13 C GLY 13 HELX_P A ASN 28 C ASN 28 1 A 16 A ILE 33 C ILE 33 HELX_P A LYS 48 C LYS 48 1 B 16 A SER 55 C SER 55 HELX_P A LYS 61 C LYS 61 1 C 7 A THR 67 C THR 67 HELX_P A THR 79 C THR 79 1 D 13 A ARG 83 C ARG 83 HELX_P A GLN 90 C GLN 90 1 E 8 A ASP 92 C ASP 92 HELX_P A ARG 102 C ARG 102 1 F 11 A PRO 108 C PRO 108 HELX_P A GLY 118 C GLY 118 1 G 11 A LEU 122 C LEU 122 HELX_P A LYS 131 C LYS 131 1 H 10 A HIS 134 C HIS 134 HELX_P A GLU 147 C GLU 147 1 I 14 A ARG 152 C ARG 152 HELX_P A VAL 169 C VAL 169 1 J 18 A GLY 179 C GLY 179 HELX_P A GLY 184 C GLY 184 1 K 6 A PRO 208 C PRO 208 HELX_P A LYS 220 C LYS 220 5 L 13 A LYS 262 C LYS 262 HELX_P A THR 273 C THR 273 5 M 12 A ASP 276 C ASP 276 HELX_P A GLU 288 C GLU 288 1 N 13 A GLU 316 C GLU 316 HELX_P A ILE 323 C ILE 323 1 O 8 A PRO 330 C PRO 330 HELX_P A ASP 332 C ASP 332 5 P 3 metalc 2.533 P DG 6 B OP1 DG 6 1_555 A NA 341 F NA NA 1_555 metalc 2.519 A LYS 60 C O LYS 60 3_547 A NA 342 G NA NA 1_555 metalc 1.985 A LEU 62 C O LEU 62 3_547 A NA 342 G NA NA 1_555 metalc 2.071 A THR 101 C O THR 101 1_555 A NA 341 F NA NA 1_555 metalc 2.268 A VAL 103 C O VAL 103 1_555 A NA 341 F NA NA 1_555 metalc 2.369 A ILE 106 C O ILE 106 1_555 A NA 341 F NA NA 1_555 metalc 2.332 A ASP 190 C OD1 ASP 190 1_555 A MN 339 D MN MN 1_555 metalc 2.325 A DCP 338 H O1A DCP 1_555 A MN 339 D MN MN 1_555 metalc 2.724 A DCP 338 H O2B DCP 1_555 A MN 339 D MN MN 1_555 metalc 2.675 A DCP 338 H O1G DCP 1_555 A MN 339 D MN MN 1_555 metalc 2.927 A NA 341 F NA NA 1_555 A HOH 601 K O HOH 1_555 hydrog WATSON-CRICK T DC 2 A N3 DC 1 1_555 P DG 6 B N1 DG 6 1_555 hydrog WATSON-CRICK T DC 2 A N4 DC 1 1_555 P DG 6 B O6 DG 6 1_555 hydrog WATSON-CRICK T DC 2 A O2 DC 1 1_555 P DG 6 B N2 DG 6 1_555 hydrog WATSON-CRICK T DA 3 A N1 DA 2 1_555 P DT 5 B N3 DT 5 1_555 hydrog WATSON-CRICK T DA 3 A N6 DA 2 1_555 P DT 5 B O4 DT 5 1_555 hydrog WATSON-CRICK T DT 4 A N3 DT 3 1_555 P DA 4 B N1 DA 4 1_555 hydrog WATSON-CRICK T DT 4 A O4 DT 3 1_555 P DA 4 B N6 DA 4 1_555 hydrog WATSON-CRICK T DC 5 A N3 DC 4 1_555 P DG 3 B N1 DG 3 1_555 hydrog WATSON-CRICK T DC 5 A N4 DC 4 1_555 P DG 3 B O6 DG 3 1_555 hydrog WATSON-CRICK T DC 5 A O2 DC 4 1_555 P DG 3 B N2 DG 3 1_555 hydrog WATSON-CRICK T DT 6 A N3 DT 5 1_555 P DA 2 B N1 DA 2 1_555 hydrog WATSON-CRICK T DT 6 A O4 DT 5 1_555 P DA 2 B N6 DA 2 1_555 hydrog WATSON-CRICK T DG 7 A N1 DG 6 1_555 P DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK T DG 7 A N2 DG 6 1_555 P DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK T DG 7 A O6 DG 6 1_555 P DC 1 B N4 DC 1 1_555 TRANSFERASE/DNA DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA), TRANSFERASE-DNA complex A GLY 274 C GLY 274 1 A SER 275 C SER 275 -1.27 DPOB_HUMAN UNP 3 P06746 9ICR PDB 1 9ICR 9ICR PDB 2 9ICR 1 334 9ICR 2 335 P06746 A 1 2 335 2 8 9ICR 2 8 9ICR T 2 1 7 1 6 9ICR 1 6 9ICR P 3 1 6 5 2 anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 174 C ILE 174 A CYS 178 C CYS 178 A MET 191 C MET 191 A THR 196 C THR 196 A ARG 253 C ARG 253 A ARG 258 C ARG 258 A LYS 234 C LYS 234 A CYS 239 C CYS 239 A ILE 224 C ILE 224 A THR 227 C THR 227 A PHE 291 C PHE 291 A ASN 294 C ASN 294 A THR 297 C THR 297 A PRO 300 C PRO 300 BINDING SITE FOR RESIDUE MN A 339 A MN 339 Software 3 BINDING SITE FOR RESIDUE MN A 340 A MN 340 Software 2 BINDING SITE FOR RESIDUE NA A 341 A NA 341 Software 5 BINDING SITE FOR RESIDUE NA A 342 A NA 342 Software 4 BINDING SITE FOR RESIDUE DCP A 338 A DCP 338 Software 14 A ASP 190 C ASP 190 3 1_555 A ASP 192 C ASP 192 3 1_555 A DCP 338 H DCP 3 1_555 A ASP 190 C ASP 190 2 1_555 A ASP 256 C ASP 256 2 1_555 A THR 101 C THR 101 5 1_555 A VAL 103 C VAL 103 5 1_555 A ILE 106 C ILE 106 5 1_555 A HOH 601 K HOH 5 1_555 P DG 6 B DG 6 5 1_555 A LYS 60 C LYS 60 4 3_547 A LEU 62 C LEU 62 4 3_547 A PRO 63 C PRO 63 4 3_547 A VAL 65 C VAL 65 4 3_547 A ARG 149 C ARG 149 14 1_555 A GLY 179 C GLY 179 14 1_555 A SER 180 C SER 180 14 1_555 A SER 188 C SER 188 14 1_555 A GLY 189 C GLY 189 14 1_555 A ASP 190 C ASP 190 14 1_555 A ASP 192 C ASP 192 14 1_555 A PHE 272 C PHE 272 14 1_555 A THR 273 C THR 273 14 1_555 A GLY 274 C GLY 274 14 1_555 A ASP 276 C ASP 276 14 1_555 A MN 339 D MN 14 1_555 A HOH 502 K HOH 14 1_555 A HOH 549 K HOH 14 1_555 18 P 21 21 2