1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-8239-3933 Horvath, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N N N 29 S C N 30 N C N 31 N O N 32 N C N 33 N C N 34 N O N 35 N O N 36 N O N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N N N 45 R C N 46 N C N 47 N O N 48 N C N 49 N S N 50 N O N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N C N 65 N O N 66 N N N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N C N 85 N O N 86 N O N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 N C N 99 N C N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 S C N 112 N C N 113 N C N 114 N C N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N N N 130 S C N 131 N C N 132 N O N 133 N C N 134 N C N 135 N C N 136 N C N 137 N O N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N C N 159 N N N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N O N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C Y 212 N C Y 213 N C Y 214 N C Y 215 N N Y 216 N C Y 217 N C Y 218 N C Y 219 N C Y 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 N C N 263 N C N 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing Y 208 N doub Y 209 N sing Y 210 N sing N 211 N sing Y 212 N doub Y 213 N sing Y 214 N sing N 215 N sing Y 216 N sing Y 217 N doub N 218 N sing Y 219 N doub N 220 N sing Y 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing Y 236 N doub Y 237 N sing Y 238 N sing N 239 N sing Y 240 N doub N 241 N sing Y 242 N doub N 243 N sing Y 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 67 16757 16772 10.1021/acs.jmedchem.4c01553 39254428 Influence of Trp-Cage on the Function and Stability of GLP-1R Agonist Exenatide Derivatives. 2024 10.2210/pdb9gdt/pdb pdb_00009gdt 10.13018/BMR34944 Disulfide bond between Cys 4 - Cys 25 residues 2820.183 Trp-cage fortified Tc5b-Exenatide chimera (Ex-4-Tc5bSS) 1 man polymer no no EEECVRLYIQWLKDGGPSSGRPPPC EEECVRLYIQWLKDGGPSSGRPPPC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 25 8554 Heloderma suspectum 562 Escherichia coli Biological sequence citation citation_author pdbx_entry_details pdbx_modification_feature repository Initial release Database references Structure summary 1 0 2024-09-25 1 1 2024-10-09 _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID Hungary Hungarian National Research, Development and Innovation Office 2018-1.2.1-NKP-2018-00005 European Union European Communitys Seventh Framework Programme RRF-2.3.1-21-2022-00015 perczel.andras@ttk.elte.hu 0000-0003-1252-6416 Andras Perczel principal investigator/group leader Trp-cage fortified Tc5b-Exenatide chimera with disulfide bond cyclization (Ex-4-Tc5bSS) at 299K N PDBE Y PDBE 2024-08-06 REL REL Y A CYS 4 Disulfide bridge SG A CYS 4 A CYS 25 SG A CYS 25 1_555 1_555 None structures with the lowest energy 20 10 isotropic 2 2D 1H-1H COSY isotropic 2 2D 1H-1H TOCSY isotropic 2 2D 1H-1H NOESY 0.8 mM non-labeled 1 % non-labeled 1 % non-labeled n.d. Not defined 1 7.08 pH 1 atm 299 K simulated annealing 1 closest to the average 0.8 mM non-labeled polypeptide, 1 % non-labeled sodium azide, 1 % non-labeled DSS, 90% H2O/10% D2O 1H 90% H2O/10% D2O solution CCPN refinement CcpNmr Analysis Assign 2.4.1. Rieping, W. et al. structure calculation ARIA2alpha 2.3.1 CCPN chemical shift assignment CcpNmr Analysis Assign 2.4.1. CCPN peak picking CcpNmr Analysis Assign 2.4.1. 700 Bruker AVANCE III GLU 1 n 1 GLU 1 A GLU 2 n 2 GLU 2 A GLU 3 n 3 GLU 3 A CYS 4 n 4 CYS 4 A VAL 5 n 5 VAL 5 A ARG 6 n 6 ARG 6 A LEU 7 n 7 LEU 7 A TYR 8 n 8 TYR 8 A ILE 9 n 9 ILE 9 A GLN 10 n 10 GLN 10 A TRP 11 n 11 TRP 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A ASP 14 n 14 ASP 14 A GLY 15 n 15 GLY 15 A GLY 16 n 16 GLY 16 A PRO 17 n 17 PRO 17 A SER 18 n 18 SER 18 A SER 19 n 19 SER 19 A GLY 20 n 20 GLY 20 A ARG 21 n 21 ARG 21 A PRO 22 n 22 PRO 22 A PRO 23 n 23 PRO 23 A PRO 24 n 24 PRO 24 A CYS 25 n 25 CYS 25 A author_and_software_defined_assembly 1 monomeric not applicable NMR Distance Restraints 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 1 A A O H VAL ILE 5 9 1.48 1 A A O H ILE LYS 9 13 1.59 2 A A O H VAL ILE 5 9 1.47 2 A A O H ILE LYS 9 13 1.58 3 A A O H VAL ILE 5 9 1.55 4 A A O H VAL ILE 5 9 1.48 5 A A O H VAL ILE 5 9 1.49 5 A A O H ILE LYS 9 13 1.57 6 A A O H VAL ILE 5 9 1.48 6 A A O H ILE LYS 9 13 1.58 7 A A O H VAL ILE 5 9 1.48 7 A A O H ILE LYS 9 13 1.59 8 A A O H VAL ILE 5 9 1.47 9 A A O H VAL ILE 5 9 1.50 9 A A O H ILE LYS 9 13 1.60 10 A A O H VAL ILE 5 9 1.47 2 A GLU 3 -128.10 -50.98 4 A GLU 3 -127.56 -52.91 5 A GLU 3 53.71 -78.44 N Trp-cage fortified Tc5b-Exenatide chimera with disulfide bond cyclization (Ex-4-Tc5bCC) at 299K 1 N N A GLU 3 A GLU 3 HELX_P A GLY 15 A GLY 15 1 AA1 13 A GLY 16 A GLY 16 HELX_P A GLY 20 A GLY 20 5 AA2 5 disulf 2.027 A CYS 4 A SG CYS 4 1_555 A CYS 25 A SG CYS 25 1_555 DE NOVO PROTEIN Exenatide, GLP-1R ligand, Trp-Cage DE NOVO PROTEIN, Miniprotein, Disulfide bond, DE NOVO PROTEIN 9GDT PDB 1 1 9GDT 1 25 9GDT 1 25 9GDT A 1 1 25