0.006275 0.000000 0.003416 0.000000 0.034188 0.000000 0.000000 0.000000 0.011608 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 60.53913 16.16152 1.10831 19.94994 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.38062 1.54875 3.38349 72.32734 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.51135 5.44231 1.42069 35.72801 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. He, Y. Deng, J. Lin, X. Huang, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 118.560 90.000 159.360 29.250 98.080 401547.488 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Ir 4 192.217 IRIDIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N IR N 115 N NA N 116 N O N 117 N P N 118 N O N 119 N O N 120 N O N 121 N C N 122 R C N 123 N O N 124 S C N 125 N O N 126 R C N 127 N O N 128 R C N 129 N N N 130 N C N 131 N O N 132 N N N 133 N C N 134 N O N 135 N C N 136 N C N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N doub N 151 N sing N 152 N sing UK Cell Discov 2056-5968 10 128 128 10.1038/s41421-024-00761-1 39743619 Structural basis for tRNA mimicry by mascRNA and menRNA. 2025 0009-0001-6301-881X 0000-0002-2121-365X 10.2210/pdb8k0y/pdb pdb_00008k0y 100 1 N PIXEL 2023-04-23 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.97918 1.0 BL10U2 SSRF 0.97918 SYNCHROTRON SSRF BEAMLINE BL10U2 18004.605 RNA (56-MER) U23G 2 syn polymer 192.217 IRIDIUM ION 7 syn non-polymer 22.990 SODIUM ION 13 syn non-polymer 18.015 water 14 nat water no no GACGCCGGUGGUGGCACUCCUGGUUUUCAGGACGGGGUUCAAUUCCCUGCGGUGUC GACGCCGGUGGUGGCACUCCUGGUUUUCAGGACGGGGUUCAAUUCCCUGCGGUGUC A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.79 55.88 VAPOR DIFFUSION, HANGING DROP 7.8 0.08 M Strontium chloride hexahydrate, 0.02 M Magnesium chloride hexahydrate, 18% v/v (+ / -)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride 291 0.255 1 20 A 29 A 21 0.293 A_A29:U21_A 1 -2.979 -0.016 0.196 -0.124 -0.466 1 19 A 30 A 20 0.934 A_G30:C20_A 2 -2.448 -0.138 0.347 -0.139 -3.922 1 19 A 31 A 19 0.177 A_G31:C19_A 3 -3.859 -0.148 0.291 -0.124 1.883 1 20 A 32 A 18 2.381 A_A32:U18_A 4 -7.912 0.124 0.321 -0.102 -3.594 1 19 A 8 A 17 2.093 A_G8:C17_A 5 -3.371 -0.204 0.012 -0.178 -5.734 1 20 A 9 A 16 3.041 A_U9:A16_A 6 -2.684 -0.122 -0.015 -0.091 -6.027 1 19 A 10 A 15 1.661 A_G10:C15_A 7 -9.036 -0.210 -0.077 -0.152 -18.268 2 A 11 A 44 118.230 A_G11:U44_A 8 5.166 -0.575 0.461 5.286 -23.115 6 A 13 A 39 95.305 A_G13:U39_A 9 -9.257 -0.559 -0.078 5.437 4.574 4 24 A 42 A 38 -98.361 A_A42:U38_A 10 13.006 -4.213 0.394 -2.132 13.808 1 19 A 45 A 37 -3.000 A_C45:G37_A 11 -9.075 0.157 0.239 -0.237 7.293 1 19 A 46 A 36 -1.960 A_C46:G36_A 12 -7.448 0.049 0.078 -0.084 5.887 1 19 A 47 A 35 0.238 A_C47:G35_A 13 -8.917 0.131 0.051 -0.120 1.363 1 28 A 48 A 34 -2.806 A_U48:G34_A 14 -10.803 2.397 0.089 -0.621 -3.259 1 19 A 49 A 33 1.768 A_G49:C33_A 15 -2.888 -0.132 0.096 -0.156 -7.064 1 19 A 50 A 7 -4.037 A_C50:G7_A 16 -8.807 0.211 0.319 -0.198 0.970 1 19 A 51 A 6 1.936 A_G51:C6_A 17 -13.210 -0.220 0.338 -0.156 -2.562 1 19 A 52 A 5 0.952 A_G52:C5_A 18 -11.303 -0.189 0.164 -0.197 1.125 1 28 A 53 A 4 -0.678 A_U53:G4_A 19 -10.851 2.189 -0.100 -0.627 -2.626 1 19 A 54 A 3 -1.390 A_G54:C3_A 20 -12.733 -0.184 0.344 -0.317 -4.274 1 20 A 55 A 2 -2.837 A_U55:A2_A 21 -14.814 -0.067 0.328 -0.208 2.343 1 19 A 56 A 1 -0.335 A_C56:G1_A 22 -4.592 0.207 0.203 -0.156 -1.643 1 19 B 1 B 56 -3.429 B_G1:C56_B 23 -9.028 -0.176 0.325 -0.219 8.161 1 20 B 2 B 55 -5.034 B_A2:U55_B 24 -12.395 0.022 0.326 -0.173 4.690 1 19 B 3 B 54 -1.198 B_C3:G54_B 25 -14.482 0.189 0.243 -0.223 2.693 1 28 B 4 B 53 -0.207 B_G4:U53_B 26 -8.718 -2.265 0.317 -0.567 -1.460 1 19 B 5 B 52 1.699 B_C5:G52_B 27 -7.356 0.254 0.244 -0.216 -3.195 1 19 B 6 B 51 -0.165 B_C6:G51_B 28 -10.023 0.050 0.475 -0.189 4.215 1 19 B 7 B 50 -5.042 B_G7:C50_B 29 -8.047 -0.157 0.014 -0.172 4.827 1 19 B 33 B 49 3.108 B_C33:G49_B 30 -7.669 0.227 -0.236 -0.190 -1.093 1 28 B 34 B 48 4.061 B_G34:U48_B 31 -10.435 -2.520 0.223 -0.465 -3.952 1 19 B 35 B 47 -1.940 B_G35:C47_B 32 -7.718 -0.203 0.245 -0.203 -7.232 1 19 B 36 B 46 -0.720 B_G36:C46_B 33 -9.369 -0.199 -0.005 -0.147 -13.513 1 19 B 37 B 45 -0.941 B_G37:C45_B 34 -11.850 -0.194 0.191 -0.109 -3.447 4 24 B 38 B 42 -98.207 B_U38:A42_B 35 9.447 4.284 0.591 -2.105 21.208 6 B 39 B 13 -99.580 B_U39:G13_B 36 4.225 0.360 0.134 -5.620 -9.649 1 19 A 14 A 40 -0.520 A_G14:C40_A 37 -9.147 -0.208 0.156 -0.295 6.421 1 19 B 15 B 10 0.238 B_C15:G10_B 38 -6.374 0.106 -0.223 -0.139 3.738 1 20 B 16 B 9 0.830 B_A16:U9_B 39 -3.010 0.124 -0.073 -0.053 4.391 1 19 B 17 B 8 2.995 B_C17:G8_B 40 -5.362 0.274 0.017 -0.173 -1.165 1 20 B 18 B 32 2.311 B_U18:A32_B 41 -13.367 -0.182 0.466 -0.212 1.718 1 19 B 19 B 31 0.393 B_C19:G31_B 42 -8.685 0.197 0.163 -0.143 0.694 1 19 B 20 B 30 1.460 B_C20:G30_B 43 -2.883 0.119 0.084 -0.101 -1.098 1 20 B 21 B 29 1.567 B_U21:A29_B 44 0.766 -0.011 -0.017 -0.132 -14.266 1 19 B 14 B 40 0.330 B_G14:C40_B 45 -5.621 -0.108 -0.065 -0.148 3.188 33.397 A A 29 30 2.467 A A 21 20 3.267 1.418 0.023 -1.834 AA_A29G30:C20U21_AA 1 0.417 -0.727 33.366 -3.423 0.028 3.028 30.913 A A 30 31 5.312 A A 20 19 3.219 2.822 0.382 -2.250 AA_G30G31:C19C20_AA 2 3.335 -6.277 30.611 -4.747 -0.097 2.908 33.343 A A 31 32 4.357 A A 19 18 3.012 2.496 0.134 -1.357 AA_G31A32:U18C19_AA 3 2.248 -3.925 33.178 -2.741 0.105 2.672 45.210 A A 32 8 12.206 A A 18 17 3.042 9.323 -0.994 -1.509 AA_A32G8:C17U18_AA 4 0.719 -0.941 44.282 -2.698 1.349 2.998 34.780 A A 8 9 4.974 A A 17 16 3.201 2.968 -0.375 -1.955 AA_G8U9:A16C17_AA 5 2.277 -3.816 34.585 -3.700 0.958 1.954 32.967 A A 9 10 27.791 A A 16 15 2.938 15.181 0.364 -1.528 AA_U9G10:C15A16_AA 6 3.058 -5.598 29.193 -4.749 -0.226 -1.639 -11.807 A A 10 11 43.504 A A 15 44 3.036 -7.169 3.038 -1.484 AA_G10G11:U44C15_AA 7 7.919 48.055 -5.038 10.102 17.956 -2.203 173.663 A A 13 42 -32.014 A A 39 38 -2.843 -62.725 -1.986 -2.721 AA_G13A42:U38U39_AA 8 160.810 -82.076 61.888 -1.882 -0.337 2.897 85.786 A A 42 45 1.572 A A 38 37 3.091 2.137 1.796 -1.673 AA_A42C45:G37U38_AA 9 -8.844 6.505 85.395 -1.273 -1.503 2.892 38.044 A A 45 46 11.706 A A 37 36 3.273 7.573 -0.651 -1.896 AA_C45C46:G36G37_AA 10 -3.517 5.436 37.150 -3.827 0.572 2.937 29.344 A A 46 47 11.106 A A 36 35 3.347 5.593 -0.250 -1.903 AA_C46C47:G35G36_AA 11 -0.393 0.780 28.815 -4.924 0.411 3.131 42.734 A A 47 48 6.860 A A 35 34 3.317 4.988 0.083 -1.498 AA_C47U48:G34G35_AA 12 0.550 -0.756 42.452 -2.549 -0.059 1.977 27.306 A A 48 49 22.088 A A 34 33 2.984 10.141 0.565 -2.325 AA_U48G49:C33G34_AA 13 4.320 -9.410 25.021 -6.927 -0.344 3.099 46.932 A A 49 50 10.137 A A 33 7 3.297 8.037 1.278 -1.146 AA_G49C50:G7C33_AA 14 1.244 -1.569 46.261 -2.094 -1.503 2.511 32.308 A A 50 51 15.450 A A 7 6 2.981 8.498 0.587 -1.332 AA_C50G51:C6G7_AA 15 -1.476 2.683 31.165 -3.682 -1.278 2.844 32.886 A A 51 52 10.529 A A 6 5 3.197 5.930 -0.028 -1.728 AA_G51G52:C5C6_AA 16 0.271 -0.481 32.360 -3.996 0.092 3.101 39.821 A A 52 53 4.059 A A 5 4 3.190 2.760 0.159 -1.275 AA_G52U53:G4C5_AA 17 3.129 -4.601 39.610 -2.180 0.116 1.229 31.324 A A 53 54 36.189 A A 4 3 2.913 18.340 -0.414 -1.971 AA_U53G54:C3G4_AA 18 1.165 -2.298 25.478 -6.081 0.921 3.080 32.414 A A 54 55 12.304 A A 3 2 3.380 6.817 -0.094 -1.071 AA_G54U55:A2C3_AA 19 1.623 -2.929 31.667 -3.118 0.454 3.007 35.397 A A 55 56 3.165 A A 2 1 3.061 1.923 0.645 -1.346 AA_U55C56:G1A2_AA 20 1.276 -2.100 35.324 -2.477 -0.887 4.455 -17.948 A B 56 1 -22.352 A B 1 56 3.196 6.800 -0.010 -3.976 AB_C56G1:C56G1_BA 21 -0.541 -1.777 -16.610 7.955 -0.413 2.802 35.046 B B 1 2 6.128 B B 56 55 2.939 3.683 -0.717 -1.440 BB_G1A2:U55C56_BB 22 -1.405 2.338 34.831 -2.878 1.005 3.118 31.721 B B 2 3 12.091 B B 55 54 3.416 6.563 0.086 -1.121 BB_A2C3:G54U55_BB 23 -0.524 0.966 31.047 -3.270 -0.254 1.450 29.111 B B 3 4 27.745 B B 54 53 2.826 13.333 0.149 -2.164 BB_C3G4:U53G54_BB 24 -6.079 12.650 25.223 -6.356 -1.231 3.205 42.575 B B 4 5 5.935 B B 53 52 3.343 4.302 -0.116 -1.289 BB_G4C5:G52U53_BB 25 -1.276 1.761 42.348 -2.212 0.031 2.597 32.247 B B 5 6 14.183 B B 52 51 3.124 7.803 0.035 -1.860 BB_C5C6:G51G52_BB 26 0.392 -0.713 31.310 -4.582 -0.001 2.082 34.626 B B 6 7 24.527 B B 51 50 2.920 14.174 -0.669 -1.321 BB_C6G7:C50G51_BB 27 3.039 -5.259 31.531 -3.972 1.500 3.136 46.597 B B 7 33 4.082 B B 50 49 3.155 3.226 -1.243 -0.949 BB_G7C33:G49C50_BB 28 -2.091 2.647 46.447 -1.460 1.402 1.668 26.690 B B 33 34 27.771 B B 49 48 3.076 12.251 -0.281 -2.338 BB_C33G34:U48G49_BB 29 -5.563 12.611 23.104 -7.555 -0.522 3.061 40.858 B B 34 35 7.335 B B 48 47 3.289 5.107 -0.261 -1.769 BB_G34G35:C47U48_BB 30 -1.581 2.271 40.522 -3.080 0.204 2.775 30.306 B B 35 36 13.102 B B 47 46 3.245 6.776 0.593 -2.013 BB_G35G36:C46C47_BB 31 3.889 -7.521 29.305 -5.130 -0.401 3.102 37.011 B B 36 37 6.772 B B 46 45 3.295 4.284 0.629 -1.925 BB_G36G37:C45C46_BB 32 3.370 -5.327 36.621 -3.599 -0.546 3.001 85.816 B B 37 38 0.977 B B 45 42 3.092 1.330 -2.185 -1.985 BB_G37U38:A42C45_BB 33 3.146 -2.311 85.761 -1.486 1.671 3.358 44.570 B B 38 39 -0.078 B B 42 13 3.101 -0.059 1.924 -1.828 BB_U38U39:G13A42_BB 34 7.052 -9.333 44.036 -2.405 -1.893 2.139 32.491 B B 15 16 29.183 B B 10 9 3.181 15.662 -0.413 -1.455 BB_C15A16:U9G10_BB 35 -2.613 4.869 28.438 -4.991 0.340 2.970 34.309 B B 16 17 4.094 B B 9 8 3.150 2.411 0.441 -1.964 BB_A16C17:G8U9_BB 36 -2.493 4.233 34.139 -3.683 -1.115 2.413 45.746 B B 17 18 15.336 B B 8 32 2.975 11.794 0.929 -1.684 BB_C17U18:A32G8_BB 37 -2.817 3.663 44.193 -3.028 -1.401 3.129 33.832 B B 18 19 2.081 B B 32 31 3.171 1.210 -0.164 -1.285 BB_U18C19:G31A32_BB 38 -1.364 2.345 33.784 -2.396 0.070 2.865 31.030 B B 19 20 7.617 B B 31 30 3.154 4.053 -0.385 -2.252 BB_C19C20:G30G31_BB 39 -4.032 7.579 30.512 -4.932 0.000 3.008 33.191 B B 20 21 6.370 B B 30 29 3.235 3.630 -0.048 -1.935 BB_C20U21:A29G30_BB 40 -1.946 3.416 32.941 -3.971 -0.229 citation citation_author repository Initial release Database references 1 0 2025-01-15 1 1 2025-07-30 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year China National Natural Science Foundation of China (NSFC) 32171191 huanglin36@mail.sysu.edu.cn 0000-0002-2121-365X Lin Huang principal investigator/group leader N PDBJ Y PDBC 2023-07-10 REL REL IR IRIDIUM ION NA SODIUM ION HOH water 8090 Oryzias latipes sample 1 56 N IR 1 2 IR IR 101 A IR 4 2 IR IR 102 A IR 5 2 IR IR 103 A IR 6 2 IR IR 104 A NA 1 3 NA NA 105 A NA 3 3 NA NA 106 A NA 5 3 NA NA 107 A NA 7 3 NA NA 108 A NA 9 3 NA NA 109 A IR 2 2 IR IR 101 B IR 3 2 IR IR 102 B IR 7 2 IR IR 103 B NA 2 3 NA NA 104 B NA 4 3 NA NA 105 B NA 6 3 NA NA 106 B NA 8 3 NA NA 107 B NA 10 3 NA NA 108 B NA 11 3 NA NA 109 B NA 12 3 NA NA 110 B NA 13 3 NA NA 111 B HOH 10 4 HOH HOH 201 A HOH 8 4 HOH HOH 202 A HOH 1 4 HOH HOH 203 A HOH 2 4 HOH HOH 204 A HOH 9 4 HOH HOH 205 A HOH 7 4 HOH HOH 206 A HOH 14 4 HOH HOH 207 A HOH 6 4 HOH HOH 201 B HOH 4 4 HOH HOH 202 B HOH 12 4 HOH HOH 203 B HOH 13 4 HOH HOH 204 B HOH 11 4 HOH HOH 205 B HOH 3 4 HOH HOH 206 B HOH 5 4 HOH HOH 207 B G 1 n 1 G 1 A A 2 n 2 A 2 A C 3 n 3 C 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A C 6 n 6 C 6 A G 7 n 7 G 7 A G 8 n 8 G 8 A U 9 n 9 U 9 A G 10 n 10 G 10 A G 11 n 11 G 11 A U 12 n 12 U 12 A G 13 n 13 G 13 A G 14 n 14 G 14 A C 15 n 15 C 15 A A 16 n 16 A 16 A C 17 n 17 C 17 A U 18 n 18 U 18 A C 19 n 19 C 19 A C 20 n 20 C 20 A U 21 n 21 U 21 A G 22 n 22 G 22 A n 23 23 A n 24 24 A n 25 25 A n 26 26 A n 27 27 A n 28 28 A A 29 n 29 A 29 A G 30 n 30 G 30 A G 31 n 31 G 31 A A 32 n 32 A 32 A C 33 n 33 C 33 A G 34 n 34 G 34 A G 35 n 35 G 35 A G 36 n 36 G 36 A G 37 n 37 G 37 A U 38 n 38 U 38 A U 39 n 39 U 39 A C 40 n 40 C 40 A A 41 n 41 A 41 A A 42 n 42 A 42 A U 43 n 43 U 43 A U 44 n 44 U 44 A C 45 n 45 C 45 A C 46 n 46 C 46 A C 47 n 47 C 47 A U 48 n 48 U 48 A G 49 n 49 G 49 A C 50 n 50 C 50 A G 51 n 51 G 51 A G 52 n 52 G 52 A U 53 n 53 U 53 A G 54 n 54 G 54 A U 55 n 55 U 55 A C 56 n 56 C 56 A G 1 n 1 G 1 B A 2 n 2 A 2 B C 3 n 3 C 3 B G 4 n 4 G 4 B C 5 n 5 C 5 B C 6 n 6 C 6 B G 7 n 7 G 7 B G 8 n 8 G 8 B U 9 n 9 U 9 B G 10 n 10 G 10 B G 11 n 11 G 11 B n 12 12 B G 13 n 13 G 13 B G 14 n 14 G 14 B C 15 n 15 C 15 B A 16 n 16 A 16 B C 17 n 17 C 17 B U 18 n 18 U 18 B C 19 n 19 C 19 B C 20 n 20 C 20 B U 21 n 21 U 21 B G 22 n 22 G 22 B G 23 n 23 G 23 B n 24 24 B n 25 25 B n 26 26 B n 27 27 B n 28 28 B A 29 n 29 A 29 B G 30 n 30 G 30 B G 31 n 31 G 31 B A 32 n 32 A 32 B C 33 n 33 C 33 B G 34 n 34 G 34 B G 35 n 35 G 35 B G 36 n 36 G 36 B G 37 n 37 G 37 B U 38 n 38 U 38 B U 39 n 39 U 39 B C 40 n 40 C 40 B A 41 n 41 A 41 B A 42 n 42 A 42 B U 43 n 43 U 43 B U 44 n 44 U 44 B C 45 n 45 C 45 B C 46 n 46 C 46 B C 47 n 47 C 47 B U 48 n 48 U 48 B G 49 n 49 G 49 B C 50 n 50 C 50 B G 51 n 51 G 51 B G 52 n 52 G 52 B U 53 n 53 U 53 B G 54 n 54 G 54 B U 55 n 55 U 55 B C 56 n 56 C 56 B 0.388776373972 -0.414153989705 0.132833400738 0.432873206626 0.171437572876 0.375635104953 0.231550281422 0.494604846465 -0.487653320786 0.273020408557 -0.307599811354 0.423336255045 0.139203513205 0.29162932995 0.0000991357397486 0.581013158377 0.0144842695691 -0.089558371527 0.539770637541 0.00107058080861 0.804613974815 refined 55.82035601 22.3776793511 54.8068546322 X-RAY DIFFRACTION 1.44473802201 0.372890295312 0.0285148855412 0.0944857042341 0.0227046953004 0.166146558408 0.330337511974 -1.15008471755 -1.25663511542 0.435199463079 -0.231745793841 -0.602499468508 -0.0570699197838 0.191508007767 0.00995062841465 1.03497134831 -0.10106414549 -0.327331193354 0.944058809628 0.21511536446 0.510591545505 refined 58.0155083824 14.0769729231 68.2263399994 X-RAY DIFFRACTION 1.22053420546 0.517532299908 -0.567823208438 0.240893283752 -0.110928905915 0.32885644177 -0.372518046674 0.0195292389569 -0.291871327191 0.558031121023 0.13413263511 0.204258946948 0.00714495502453 0.238043590811 0.000705894393431 0.592161288529 0.0780597490368 -0.0106572039469 0.608417597918 0.0415499423629 0.521347405808 refined 52.4522262234 16.4255331741 52.4879253259 X-RAY DIFFRACTION 0.796487751761 0.491202529724 0.471856301461 0.282585780668 0.430513782862 0.540454434684 0.425601190846 0.989051687108 -0.119380245787 0.401015550766 0.0526659088581 -0.378190244382 0.0454777582013 -0.459519680328 0.0353326102863 0.655427979266 0.0714102919981 0.0613754666171 0.654097175191 -0.157635946553 0.696890280603 refined 10.5975636829 34.5846698053 57.0908330335 X-RAY DIFFRACTION 0.0709875002973 -0.046365538459 0.0416622755622 0.61217234125 0.098059370287 0.0509334940607 0.494469553365 -1.27142506487 0.946839326146 0.564397141936 0.74661699981 0.330039231991 -0.841924948451 0.395237571281 0.0337118377584 1.73857415733 -0.111849608989 0.285762709118 1.48449276036 -0.23737977189 0.80454064261 refined 5.83070057999 42.5134808269 76.4582617034 X-RAY DIFFRACTION 0.40877886701 0.00178265175071 -0.213327167026 0.13503793375 0.164047946353 0.280989836268 -0.247124042025 0.0598153408565 0.231832169939 0.471918563287 0.228111797441 0.495339828738 -0.16525571356 -0.540916727736 -0.000635924163327 0.759890263473 0.0902744735685 0.0572087689947 0.76098253297 0.0411146700042 0.763282532504 refined 9.08287774895 48.6085754792 55.1679054288 X-RAY DIFFRACTION 0.542229571017 0.539609413923 0.118773117807 0.515568809226 0.147289528707 -0.0122242940837 -0.2343910585 0.393004702501 -0.679773023853 0.331755311302 0.26847809324 -0.875006229397 -0.0334401587061 -0.146612976019 0.00305328307418 0.608724753734 0.0545625502586 -0.0321770154861 0.630759906504 -0.165491296365 0.992224031839 refined 17.9151574168 36.6974504746 54.5609057293 X-RAY DIFFRACTION A 1 A A 15 A X-RAY DIFFRACTION 1 chain 'A' and (resid 1 through 15 ) A 16 A A 36 A X-RAY DIFFRACTION 2 chain 'A' and (resid 16 through 36 ) A 37 A A 56 A X-RAY DIFFRACTION 3 chain 'A' and (resid 37 through 56 ) B 1 B B 16 B X-RAY DIFFRACTION 4 chain 'B' and (resid 1 through 16 ) B 17 B B 31 B X-RAY DIFFRACTION 5 chain 'B' and (resid 17 through 31 ) B 32 B B 41 B X-RAY DIFFRACTION 6 chain 'B' and (resid 32 through 41 ) B 42 B B 56 B X-RAY DIFFRACTION 7 chain 'B' and (resid 42 through 56 ) author_and_software_defined_assembly PISA 2 dimeric none 150 -11 8530 A G 8 A OP1 G 8 1_555 A NA 105 G NA NA 1_555 A U 43 A O2 U 43 1_555 169.0 B G 8 B OP1 G 8 1_555 B NA 111 V NA NA 1_555 B U 43 B O2 U 43 1_555 129.5 B G 35 B O6 G 35 1_555 B NA 108 S NA NA 1_555 B G 36 B O6 G 36 1_555 67.8 B U 38 B O4 U 38 1_555 B NA 109 T NA NA 1_555 B U 39 B O4 U 39 1_555 73.8 B U 38 B O4 U 38 1_555 B NA 109 T NA NA 1_555 B HOH 202 X O HOH 1_555 106.6 B U 39 B O4 U 39 1_555 B NA 109 T NA NA 1_555 B HOH 202 X O HOH 1_555 49.0 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 1 A G 23 A G 23 1 Y 1 A U 24 A U 24 1 Y 1 A U 25 A U 25 1 Y 1 A U 26 A U 26 1 Y 1 A U 27 A U 27 1 Y 1 A C 28 A C 28 1 Y 1 B U 12 B U 12 1 Y 1 B U 24 B U 24 1 Y 1 B U 25 B U 25 1 Y 1 B U 26 B U 26 1 Y 1 B U 27 B U 27 1 Y 1 B C 28 B C 28 1 Y 1 A A O O HOH HOH 201 206 2.16 1 -6.51 0.90 105.70 99.19 B B B O5' P OP2 A A A 42 42 42 N 0.2854 0.2486 2.28 28.08 946 32731 17707 5.09 97.28 0.3618 1 FREE R-VALUE 1.34 SAD 38.1786 0.9000 1.1100 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 2.28 28.08 14 2175 20 2141 0 0.0049 2387 0.9610 3713 0.0408 500 0.0076 100 11.7107 1185 d_2 A A ens_1 X-RAY DIFFRACTION Torsion NCS 0.947020664154 0.4527 0.4235 2.34 145 2489 98.21 0.4188 0.3853 2.41 153 2577 98.73 0.4083 0.3429 2.49 139 2535 98.64 0.3508 0.3328 2.58 128 2593 99.63 0.3632 0.3202 2.68 132 2634 99.46 0.3220 0.3128 2.80 120 2494 98.75 0.3296 0.3002 2.95 130 2534 95.79 0.2773 0.2273 3.13 147 2381 93.91 0.3002 0.1982 3.38 153 2438 94.67 0.2333 0.2050 3.71 129 2494 95.83 0.2117 0.1794 4.25 135 2543 97.49 0.2535 0.2049 5.35 104 2519 97.26 0.2720 0.2631 28.08 142 2500 96.39 63.97 2.28 28.72 8K0Y 17707 0.997 0.079 1 12.4 6.1 99.6 1.174 2.28 2.34 1.6 1336 0.618 1 5.5 99.8 refinement PHENIX 1.19.2_4158 data reduction xia2 data scaling xia2 phasing PHENIX 5 monoclinic C 1 2 1 C 2y x,y,z -x,y,-z x+1/2,y+1/2,z -x+1/2,y+1/2,-z N Crystal structure of a medaka mascRNA U23G 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N metalc 2.333 A G 8 A OP1 G 8 1_555 A NA 105 G NA NA 1_555 metalc 3.061 A C 33 A OP2 C 33 1_555 A NA 106 H NA NA 1_555 metalc 2.510 A U 39 A O4 U 39 1_555 A NA 107 I NA NA 1_555 metalc 2.711 A U 43 A O2 U 43 1_555 A NA 105 G NA NA 1_555 metalc 2.423 B G 8 B OP1 G 8 1_555 B NA 111 V NA NA 1_555 metalc 3.179 B G 35 B O6 G 35 1_555 B NA 108 S NA NA 1_555 metalc 2.601 B G 36 B O6 G 36 1_555 B NA 108 S NA NA 1_555 metalc 2.616 B U 38 B O4 U 38 1_555 B NA 109 T NA NA 1_555 metalc 2.664 B U 39 B O4 U 39 1_555 B NA 109 T NA NA 1_555 metalc 2.946 B U 43 B O2 U 43 1_555 B NA 111 V NA NA 1_555 metalc 2.304 B IR 102 M IR IR 1_555 B HOH 207 X O HOH 1_555 metalc 3.053 B NA 109 T NA NA 1_555 B HOH 202 X O HOH 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 56 A N3 C 56 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 56 A O2 C 56 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 56 A N4 C 56 1_555 hydrog WATSON-CRICK A A 2 A N1 A 2 1_555 A U 55 A N3 U 55 1_555 hydrog WATSON-CRICK A A 2 A N6 A 2 1_555 A U 55 A O4 U 55 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 54 A N1 G 54 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 54 A O6 G 54 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 54 A N2 G 54 1_555 hydrog TYPE_28_PAIR A G 4 A N1 G 4 1_555 A U 53 A O2 U 53 1_555 hydrog TYPE_28_PAIR A G 4 A O6 G 4 1_555 A U 53 A N3 U 53 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 52 A N1 G 52 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 52 A O6 G 52 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 52 A N2 G 52 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 A G 51 A N1 G 51 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 A G 51 A O6 G 51 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 A G 51 A N2 G 51 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 A C 50 A N3 C 50 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 A C 50 A O2 C 50 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 A C 50 A N4 C 50 1_555 hydrog WATSON-CRICK A G 8 A N1 G 8 1_555 A C 17 A N3 C 17 1_555 hydrog WATSON-CRICK A G 8 A N2 G 8 1_555 A C 17 A O2 C 17 1_555 hydrog WATSON-CRICK A G 8 A O6 G 8 1_555 A C 17 A N4 C 17 1_555 hydrog WATSON-CRICK A U 9 A N3 U 9 1_555 A A 16 A N1 A 16 1_555 hydrog WATSON-CRICK A U 9 A O4 U 9 1_555 A A 16 A N6 A 16 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 A C 15 A N3 C 15 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 A C 15 A O2 C 15 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 A C 15 A N4 C 15 1_555 hydrog G-U MISPAIR A G 11 A N1 G 11 1_555 A U 44 A O2 U 44 1_555 hydrog G-U MISPAIR A G 13 A N1 G 13 1_555 A U 39 A O2 U 39 1_555 hydrog WATSON-CRICK A G 14 A N1 G 14 1_555 A C 40 A N3 C 40 1_555 hydrog WATSON-CRICK A G 14 A N2 G 14 1_555 A C 40 A O2 C 40 1_555 hydrog WATSON-CRICK A G 14 A O6 G 14 1_555 A C 40 A N4 C 40 1_555 hydrog WATSON-CRICK A U 18 A N3 U 18 1_555 A A 32 A N1 A 32 1_555 hydrog WATSON-CRICK A U 18 A O4 U 18 1_555 A A 32 A N6 A 32 1_555 hydrog WATSON-CRICK A C 19 A N3 C 19 1_555 A G 31 A N1 G 31 1_555 hydrog WATSON-CRICK A C 19 A N4 C 19 1_555 A G 31 A O6 G 31 1_555 hydrog WATSON-CRICK A C 19 A O2 C 19 1_555 A G 31 A N2 G 31 1_555 hydrog WATSON-CRICK A C 20 A N3 C 20 1_555 A G 30 A N1 G 30 1_555 hydrog WATSON-CRICK A C 20 A N4 C 20 1_555 A G 30 A O6 G 30 1_555 hydrog WATSON-CRICK A C 20 A O2 C 20 1_555 A G 30 A N2 G 30 1_555 hydrog WATSON-CRICK A U 21 A N3 U 21 1_555 A A 29 A N1 A 29 1_555 hydrog WATSON-CRICK A U 21 A O4 U 21 1_555 A A 29 A N6 A 29 1_555 hydrog WATSON-CRICK A C 33 A N3 C 33 1_555 A G 49 A N1 G 49 1_555 hydrog WATSON-CRICK A C 33 A N4 C 33 1_555 A G 49 A O6 G 49 1_555 hydrog WATSON-CRICK A C 33 A O2 C 33 1_555 A G 49 A N2 G 49 1_555 hydrog TYPE_28_PAIR A G 34 A N1 G 34 1_555 A U 48 A O2 U 48 1_555 hydrog TYPE_28_PAIR A G 34 A O6 G 34 1_555 A U 48 A N3 U 48 1_555 hydrog WATSON-CRICK A G 35 A N1 G 35 1_555 A C 47 A N3 C 47 1_555 hydrog WATSON-CRICK A G 35 A N2 G 35 1_555 A C 47 A O2 C 47 1_555 hydrog WATSON-CRICK A G 35 A O6 G 35 1_555 A C 47 A N4 C 47 1_555 hydrog WATSON-CRICK A G 36 A N1 G 36 1_555 A C 46 A N3 C 46 1_555 hydrog WATSON-CRICK A G 36 A N2 G 36 1_555 A C 46 A O2 C 46 1_555 hydrog WATSON-CRICK A G 36 A O6 G 36 1_555 A C 46 A N4 C 46 1_555 hydrog WATSON-CRICK A G 37 A N1 G 37 1_555 A C 45 A N3 C 45 1_555 hydrog WATSON-CRICK A G 37 A N2 G 37 1_555 A C 45 A O2 C 45 1_555 hydrog WATSON-CRICK A G 37 A O6 G 37 1_555 A C 45 A N4 C 45 1_555 hydrog REVERSED HOOGSTEEN A U 38 A N3 U 38 1_555 A A 42 A N7 A 42 1_555 hydrog REVERSED HOOGSTEEN A U 38 A O2 U 38 1_555 A A 42 A N6 A 42 1_555 hydrog WATSON-CRICK B G 1 B N1 G 1 1_555 B C 56 B N3 C 56 1_555 hydrog WATSON-CRICK B G 1 B N2 G 1 1_555 B C 56 B O2 C 56 1_555 hydrog WATSON-CRICK B G 1 B O6 G 1 1_555 B C 56 B N4 C 56 1_555 hydrog WATSON-CRICK B A 2 B N1 A 2 1_555 B U 55 B N3 U 55 1_555 hydrog WATSON-CRICK B A 2 B N6 A 2 1_555 B U 55 B O4 U 55 1_555 hydrog WATSON-CRICK B C 3 B N3 C 3 1_555 B G 54 B N1 G 54 1_555 hydrog WATSON-CRICK B C 3 B N4 C 3 1_555 B G 54 B O6 G 54 1_555 hydrog WATSON-CRICK B C 3 B O2 C 3 1_555 B G 54 B N2 G 54 1_555 hydrog TYPE_28_PAIR B G 4 B N1 G 4 1_555 B U 53 B O2 U 53 1_555 hydrog TYPE_28_PAIR B G 4 B O6 G 4 1_555 B U 53 B N3 U 53 1_555 hydrog WATSON-CRICK B C 5 B N3 C 5 1_555 B G 52 B N1 G 52 1_555 hydrog WATSON-CRICK B C 5 B N4 C 5 1_555 B G 52 B O6 G 52 1_555 hydrog WATSON-CRICK B C 5 B O2 C 5 1_555 B G 52 B N2 G 52 1_555 hydrog WATSON-CRICK B C 6 B N3 C 6 1_555 B G 51 B N1 G 51 1_555 hydrog WATSON-CRICK B C 6 B N4 C 6 1_555 B G 51 B O6 G 51 1_555 hydrog WATSON-CRICK B C 6 B O2 C 6 1_555 B G 51 B N2 G 51 1_555 hydrog WATSON-CRICK B G 7 B N1 G 7 1_555 B C 50 B N3 C 50 1_555 hydrog WATSON-CRICK B G 7 B N2 G 7 1_555 B C 50 B O2 C 50 1_555 hydrog WATSON-CRICK B G 7 B O6 G 7 1_555 B C 50 B N4 C 50 1_555 hydrog WATSON-CRICK B G 8 B N1 G 8 1_555 B C 17 B N3 C 17 1_555 hydrog WATSON-CRICK B G 8 B N2 G 8 1_555 B C 17 B O2 C 17 1_555 hydrog WATSON-CRICK B G 8 B O6 G 8 1_555 B C 17 B N4 C 17 1_555 hydrog WATSON-CRICK B U 9 B N3 U 9 1_555 B A 16 B N1 A 16 1_555 hydrog WATSON-CRICK B U 9 B O4 U 9 1_555 B A 16 B N6 A 16 1_555 hydrog WATSON-CRICK B G 10 B N1 G 10 1_555 B C 15 B N3 C 15 1_555 hydrog WATSON-CRICK B G 10 B N2 G 10 1_555 B C 15 B O2 C 15 1_555 hydrog WATSON-CRICK B G 10 B O6 G 10 1_555 B C 15 B N4 C 15 1_555 hydrog G-U MISPAIR B G 13 B N1 G 13 1_555 B U 39 B O2 U 39 1_555 hydrog WATSON-CRICK B G 14 B N1 G 14 1_555 B C 40 B N3 C 40 1_555 hydrog WATSON-CRICK B G 14 B N2 G 14 1_555 B C 40 B O2 C 40 1_555 hydrog WATSON-CRICK B G 14 B O6 G 14 1_555 B C 40 B N4 C 40 1_555 hydrog C-U MISPAIR B C 15 B N4 C 15 1_555 B U 43 B O4 U 43 1_555 hydrog WATSON-CRICK B U 18 B N3 U 18 1_555 B A 32 B N1 A 32 1_555 hydrog WATSON-CRICK B U 18 B O4 U 18 1_555 B A 32 B N6 A 32 1_555 hydrog WATSON-CRICK B C 19 B N3 C 19 1_555 B G 31 B N1 G 31 1_555 hydrog WATSON-CRICK B C 19 B N4 C 19 1_555 B G 31 B O6 G 31 1_555 hydrog WATSON-CRICK B C 19 B O2 C 19 1_555 B G 31 B N2 G 31 1_555 hydrog WATSON-CRICK B C 20 B N3 C 20 1_555 B G 30 B N1 G 30 1_555 hydrog WATSON-CRICK B C 20 B N4 C 20 1_555 B G 30 B O6 G 30 1_555 hydrog WATSON-CRICK B C 20 B O2 C 20 1_555 B G 30 B N2 G 30 1_555 hydrog WATSON-CRICK B U 21 B N3 U 21 1_555 B A 29 B N1 A 29 1_555 hydrog WATSON-CRICK B U 21 B O4 U 21 1_555 B A 29 B N6 A 29 1_555 hydrog WATSON-CRICK B C 33 B N3 C 33 1_555 B G 49 B N1 G 49 1_555 hydrog WATSON-CRICK B C 33 B N4 C 33 1_555 B G 49 B O6 G 49 1_555 hydrog WATSON-CRICK B C 33 B O2 C 33 1_555 B G 49 B N2 G 49 1_555 hydrog TYPE_28_PAIR B G 34 B N1 G 34 1_555 B U 48 B O2 U 48 1_555 hydrog TYPE_28_PAIR B G 34 B O6 G 34 1_555 B U 48 B N3 U 48 1_555 hydrog WATSON-CRICK B G 35 B N1 G 35 1_555 B C 47 B N3 C 47 1_555 hydrog WATSON-CRICK B G 35 B N2 G 35 1_555 B C 47 B O2 C 47 1_555 hydrog WATSON-CRICK B G 35 B O6 G 35 1_555 B C 47 B N4 C 47 1_555 hydrog WATSON-CRICK B G 36 B N1 G 36 1_555 B C 46 B N3 C 46 1_555 hydrog WATSON-CRICK B G 36 B N2 G 36 1_555 B C 46 B O2 C 46 1_555 hydrog WATSON-CRICK B G 36 B O6 G 36 1_555 B C 46 B N4 C 46 1_555 hydrog WATSON-CRICK B G 37 B N1 G 37 1_555 B C 45 B N3 C 45 1_555 hydrog WATSON-CRICK B G 37 B N2 G 37 1_555 B C 45 B O2 C 45 1_555 hydrog WATSON-CRICK B G 37 B O6 G 37 1_555 B C 45 B N4 C 45 1_555 hydrog REVERSED HOOGSTEEN B U 38 B N3 U 38 1_555 B A 42 B N7 A 42 1_555 hydrog REVERSED HOOGSTEEN B U 38 B O2 U 38 1_555 B A 42 B N6 A 42 1_555 RNA MascRNA, tRNA-like, MALAT1, RNA (chain "A" and (resid 1 through 11 or resid 13 through 56)) (chain "B" and (resid 1 through 22 or resid 29 through 56)) A G 1 A G 1 A C 3 A C 3 B G 1 B G 1 B C 3 B C 3 given -0.999187717128 0.0399312903662 0.00542199129745 -0.039817234732 -0.999012241863 0.019726338368 0.00620433382666 0.019494426301 0.999790714892 65.4770424131 57.9083369761 0.501926491904 8K0Y PDB 1 1 8K0Y 1 56 8K0Y 1 56 8K0Y A 1 1 56 1 56 8K0Y 1 56 8K0Y B 1 1 56 5 C 1 2 1 C 2y