0.008032 0.000000 0.000000 0.000000 0.008032 0.000000 0.000000 0.000000 0.012063 0.000000 0.000000 0.000000 0000-0002-2563-3002 Donkor, A.K. 0000-0002-1146-536X Ghatge, M.S. 0000-0002-7969-1590 Musayev, F.N. 0000-0002-9536-1743 Safo, M.K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 124.508 124.508 82.901 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C8 H10 N O6 P 247.142 PYRIDOXAL-5'-PHOSPHATE VITAMIN B6 Phosphate non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H Y 273 N N Y 274 N C N 275 N C Y 276 N C N 277 N O Y 278 N C N 279 N C N 280 N O Y 281 N C Y 282 N C N 283 N C N 284 N O N 285 N P N 286 N O N 287 N O N 288 N O N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C N 304 N C N 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 N C N 321 N O N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N S N 331 N O N 332 N O N 333 N O N 334 N O N 335 N N N 336 S C N 337 N C N 338 N O N 339 R C N 340 N O N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N N Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing Y 260 N doub Y 261 N sing N 262 N sing Y 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing Y 268 N doub N 269 N sing N 270 N sing Y 271 N sing N 272 N doub N 273 N sing Y 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing Y 347 N doub Y 348 N sing Y 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N sing Y 356 N doub N 357 N sing Y 358 N doub N 359 N sing Y 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N doub N 380 N sing Y 381 N doub N 382 N sing Y 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing US Protein Sci. PRCIEI 0795 1469-896X 31 e4471 e4471 10.1002/pro.4471 36218140 Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability. 2022 0000-0002-5235-9993 10.2210/pdb7ubp/pdb pdb_00007ubp 100 1 N VariMax TM-VHF Arc)Sec Confocal Optical System PIXEL 2021-01-12 DECTRIS EIGER R 4M SINGLE WAVELENGTH M x-ray 1 1.5406 1.0 1.5406 ROTATING ANODE RIGAKU MICROMAX-007 HF 25704.238 Pyridoxal phosphate homeostasis protein K36A, K137A 1 man polymer 247.142 PYRIDOXAL-5'-PHOSPHATE 2 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 138 nat water PLP homeostasis protein no no MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSATKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWH FIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSASGIQLAELDELAAAVAELPRLRL RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSATKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWH FIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSASGIQLAELDELAAAVAELPRLRL RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 234 yggS, yggS_1, A5U30_002536, A6592_01605, A8499_002487, A9X72_04235, AAG43_002119, ABE90_008885, ACN81_19285, ACU57_02420, AM464_06455, APX88_16445, AT335_001847, AW119_01715, AWP93_03370, B6R31_003812, B6R48_004381, B6R87_004199, BANRA_03839, BANRA_04036, BF481_004825, BFL24_20630, BG944_003862, BGZ_03731, BHS81_17785, BIZ41_00110, BJI68_00120, BMC79_000896, BMT50_14985, BMT91_06560, BN17_28641, BO068_000828, BON63_07220, BON64_00505, BON66_18090, BON67_07075, BON68_25380, BON69_08055, BON71_16625, BON72_22075, BON73_20790, BON74_12080, BON75_05715, BON76_19600, BON77_06680, BON78_02935, BON79_04735, BON80_08660, BON84_07605, BON87_03690, BON88_27660, BON89_07800, BON90_06555, BON91_21215, BON92_03035, BON93_14700, BON94_11530, BON95_23425, BON96_08755, BON97_01525, BON98_24335, BR158_001158, BSR05_00525, BTQ06_15305, BvCmsF30A_00775, BvCmsHHP019_01430, BvCmsKKP036_00786, BvCmsKSNP073_01009, BvCmsNSP072_00005, BVL39_11960, C2121_000334, C2U48_19125, C3F40_21750, C5N07_11350, C5Y87_01815, C9114_13755, C9160_19505, C9E67_04785, CCS08_04675, CDC27_15720, CDL36_11990, CG692_04170, CG831_001596, CIG67_09495, CO706_12770, COD53_12020, CR538_04470, CR539_19790, CWS33_02090, CXJ73_003041, D3822_03980, D3G36_06505, D3Y67_09635, D9D77_01715, D9E34_07450, D9H94_01780, D9J61_17485, DAH19_03655, DAH20_07105, DAH21_16420, DAH22_01755, DAH23_02545, DAH24_02555, DAH25_06525, DAH26_02550, DAH27_13005, DAH28_14020, DAH29_07970, DAH30_03695, DAH31_07445, DAH32_08165, DAH33_07600, DAH36_04450, DAH38_14410, DAH40_03245, DAH41_08800, DAH42_03480, DAH43_04295, DAH45_02570, DAH46_04290, DAH47_01830, DAH48_00100, DAH49_05945, DAH50_00985, DEN87_23415, DEN88_15345, DEN89_15360, DEN90_09900, DEN93_01895, DEN94_02765, DEN95_05305, DEN96_03260, DEN97_02915, DEN98_02920, DEN99_00275, DEO00_02260, DEO01_06395, DEO02_04040, DEO03_09945, DEO04_01960, DEO05_01955, DEO06_10490, DEO07_10895, DEO08_05235, DEO09_01960, DEO10_03860, DEO11_03875, DEO12_19480, DEO13_03715, DEO14_14565, DEO15_02570, DEO17_09170, DEO18_08415, DEO19_02695, DEO20_04970, DIV22_04725, DM870_04190, DN627_06500, DNQ45_04905, DRW19_08955, DS732_21845, DTL43_08565, DTM16_23260, DTM45_03435, DU321_13160, DXT69_09050, DXT70_01070, DXT73_11060, E0I42_19975, E2113_22350, E2114_23105, E2115_25170, E2116_22045, E2117_06585, E2118_25780, E2119_17460, E2120_22990, E2121_10340, E2123_21170, E2124_21650, E2125_22595, E2127_08790, E2128_15520, E2129_10865, E2130_22720, E2132_07800, E2134_10685, E2136_04185, E5M02_18275, E5P22_07505, E5P23_16320, E5P24_19370, E5P25_09260, E5P30_04575, E5P31_12580, E5P32_10610, E5P35_01370, E5P36_03040, E5P37_15605, E5P39_18620, E5P40_16160, E5P41_17595, E5P42_03955, E5P43_17815, E5P44_03755, E5P45_15495, E5P46_17265, E5P47_15135, E5P48_16110, E5P49_09785, E5P50_06510, E5P51_14720, E5P52_04945, E5S34_19085, E5S35_06260, E5S36_16600, E5S37_19475, E5S38_02910, E5S39_05640, E5S42_02315, E5S43_06610, E5S44_08370, E5S46_03050, E5S47_04035, E5S48_19765, E5S51_01045, E5S52_07370, E5S53_08955, E5S55_07915, E5S56_10495, E5S57_01375, E5S58_01605, E5S61_06985, E5S62_00685, EA435_13755, EAI46_13050, EAN77_06340, EAX79_18760, EBP16_03495, EC3234A_50c00850, EC95NR1_02249, ECs3826, ED648_12865, EHD79_07725, EHH55_19850, EI021_05995, EIZ93_04705, EKI52_19505, EL79_0770, EL80_0765, ELT16_22100, ELT20_11815, ELT21_06930, ELT24_14260, ELT25_23905, ELT26_01120, ELT27_12075, ELT29_11660, ELT30_23070, ELT32_11085, ELT34_21400, ELT35_11005, ELT36_22555, ELT39_24285, ELT40_23250, ELT44_23345, ELT45_23015, ELT46_09740, ELT48_18535, ELT51_11245, ELT54_23985, ELT55_20860, ELT59_22130, ELT60_23295, ELT61_23190, ELT63_22530, ELT72_21945, ELU07_18210, ELU82_21625, ELU88_08890, ELU89_22125, ELU90_06760, ELU91_22220, ELU94_16485, ELU96_24085, ELU97_24105, ELU98_16800, ELV00_09650, ELV01_14635, ELV02_23710, ELV03_14355, ELV04_23130, ELV05_13450, ELV07_18185, ELV08_03735, ELV09_05255, ELV11_25160, ELV12_21430, ELV13_23925, ELV20_21495, ELV21_16555, ELV22_07885, ELV23_09990, ELV24_22210, ELV29_20480, ELX56_22225, ELX61_10855, ELX68_21270, ELX70_06600, ELX79_17745, ELX83_22385, ELX85_03700, ELY02_06930, ELY05_01540, ELY23_22015, ELY24_21105, ELY36_14265, ELY39_02230, ELY48_11860, ELY50_05765, EPS76_23030, ERS085406_01321, EVY14_04185, EXX13_15075, EYV17_01965, EYV18_21555, EYX47_12185, F0L67_07365, F2N31_22060, F7F11_00195, F9S76_07455, F9S83_14710, F9V24_03870, F9X20_25345, FE587_00885, FEJ01_00445, FFF58_11750, FJQ51_10270, FKO60_04535, FOI11_01810, FOI11_021370, FPI65_18190, FQ007_01470, FQF29_10150, FTV90_24115, FTV92_22795, FTV93_22815, FV293_10555, FVB16_24045, FY127_17985, FZN31_04490, G3565_13830, G5632_06490, G9448_18855, GIB53_14050, GKF86_09175, GKF89_08035, GKG12_00085, GNO40_18860, GNZ05_07955, GP650_01920, GP662_19735, GP946_14015, GP954_13245, GP979_21920, GQE64_15305, GQF59_22030, GQM04_18765, GQM09_03895, GQM13_07895, GQW68_13910, GQW80_01115, GRC73_21480, GRW05_17975, GRW57_26645, GRW81_17185, GTP88_07945, GUB08_20850, GUB92_14665, GUC01_11340, GUI33_09255, HHH44_003830, HI055_000095, HKA49_003353, HL563_05490, HLV18_01610, HLZ50_19300, HMU06_00730, HMU48_04490, HMV41_05740, HMV95_09385, HV209_16500, HV209_28430, HVV39_06655, HVW19_10795, HVW43_21550, HVX16_04630, HVX32_17080, HVY77_04590, HVZ71_04370, HX136_04100, I6H00_22940, I6H01_08680, I6H02_10245, IAI11_03475, IH768_06245, IH772_17565, IT029_002518, J0541_004081, J4S20_003608, J5U05_000108, JE86ST02C_34240, JE86ST05C_34280, JFD_01472, JNP96_22325, NCTC10082_03252, NCTC10089_00898, NCTC10090_03953, NCTC10418_01404, NCTC10429_01490, NCTC10865_01122, NCTC10958_00951, NCTC10974_01056, NCTC11126_04786, NCTC11181_03104, NCTC12950_01061, NCTC13148_02921, NCTC13216_00987, NCTC4450_02839, NCTC7928_01950, NCTC8008_00336, NCTC8009_02182, NCTC8179_06415, NCTC8333_00986, NCTC8450_05416, NCTC8959_02664, NCTC8985_05487, NCTC9036_00912, NCTC9037_01055, NCTC9045_01016, NCTC9111_01297, NCTC9117_01392, NCTC9775_04646, ND22_003843, RG28_06665, SAMEA3472044_02854, SAMEA3472067_03679, SAMEA3472080_03697, SAMEA3472147_01446, SAMEA3751407_00781, SAMEA3752557_03404, TUM18780_07680, WP2S18E08_09360, WP4S18E07_08580 562 Escherichia coli 562 Escherichia coli HMS174 plasmid Biological sequence pET-28A 1 3.1 60 VAPOR DIFFUSION, HANGING DROP 10.5 2M Ammonium sulfate, 0.1M CAPS/NaOH. pH 10.5, 0.2M Li2SO4 293 audit_author citation_author pdbx_audit_support citation_author citation citation_author citation chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Author supporting evidence Database references Structure summary Database references Database references Database references Data collection Refinement description 1 0 2022-03-23 1 1 2022-04-06 1 2 2022-09-28 1 3 2022-10-26 1 4 2022-11-09 1 5 2023-10-18 _citation_author.name _citation_author.name _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation.journal_volume _citation.title United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM129793 United States Other government S10OD021756 msafo@vcu.edu 0000-0002-9536-1743 Martin Safo K. principal investigator/group leader N RCSB Y RCSB 2022-03-15 REL REL PLP PLP SUBJECT OF INVESTIGATION SO4 SO4 SUBJECT OF INVESTIGATION PLP PYRIDOXAL-5'-PHOSPHATE SO4 SULFATE ION HOH water Y 1W8G PDB experimental model PLP 306 2 PLP PLP 301 A PLP 308 2 PLP PLP 302 A SO4 1 3 SO4 SO4 303 A SO4 2 3 SO4 SO4 304 A HOH 125 4 HOH HOH 401 A HOH 88 4 HOH HOH 402 A HOH 128 4 HOH HOH 403 A HOH 91 4 HOH HOH 404 A HOH 48 4 HOH HOH 405 A HOH 138 4 HOH HOH 406 A HOH 87 4 HOH HOH 407 A HOH 54 4 HOH HOH 408 A HOH 102 4 HOH HOH 409 A HOH 72 4 HOH HOH 410 A HOH 45 4 HOH HOH 411 A HOH 82 4 HOH HOH 412 A HOH 113 4 HOH HOH 413 A HOH 34 4 HOH HOH 414 A HOH 6 4 HOH HOH 415 A HOH 74 4 HOH HOH 416 A HOH 22 4 HOH HOH 417 A HOH 37 4 HOH HOH 418 A HOH 35 4 HOH HOH 419 A HOH 25 4 HOH HOH 420 A HOH 21 4 HOH HOH 421 A HOH 69 4 HOH HOH 422 A HOH 126 4 HOH HOH 423 A HOH 9 4 HOH HOH 424 A HOH 63 4 HOH HOH 425 A HOH 103 4 HOH HOH 426 A HOH 65 4 HOH HOH 427 A HOH 29 4 HOH HOH 428 A HOH 64 4 HOH HOH 429 A HOH 61 4 HOH HOH 430 A HOH 11 4 HOH HOH 431 A HOH 143 4 HOH HOH 432 A HOH 77 4 HOH HOH 433 A HOH 51 4 HOH HOH 434 A HOH 41 4 HOH HOH 435 A HOH 31 4 HOH HOH 436 A HOH 121 4 HOH HOH 437 A HOH 23 4 HOH HOH 438 A HOH 139 4 HOH HOH 439 A HOH 14 4 HOH HOH 440 A HOH 114 4 HOH HOH 441 A HOH 67 4 HOH HOH 442 A HOH 4 4 HOH HOH 443 A HOH 60 4 HOH HOH 444 A HOH 3 4 HOH HOH 445 A HOH 104 4 HOH HOH 446 A HOH 146 4 HOH HOH 447 A HOH 68 4 HOH HOH 448 A HOH 8 4 HOH HOH 449 A HOH 130 4 HOH HOH 450 A HOH 38 4 HOH HOH 451 A HOH 85 4 HOH HOH 452 A HOH 79 4 HOH HOH 453 A HOH 132 4 HOH HOH 454 A HOH 84 4 HOH HOH 455 A HOH 124 4 HOH HOH 456 A HOH 16 4 HOH HOH 457 A HOH 71 4 HOH HOH 458 A HOH 73 4 HOH HOH 459 A HOH 26 4 HOH HOH 460 A HOH 142 4 HOH HOH 461 A HOH 96 4 HOH HOH 462 A HOH 94 4 HOH HOH 463 A HOH 15 4 HOH HOH 464 A HOH 110 4 HOH HOH 465 A HOH 76 4 HOH HOH 466 A HOH 40 4 HOH HOH 467 A HOH 131 4 HOH HOH 468 A HOH 120 4 HOH HOH 469 A HOH 92 4 HOH HOH 470 A HOH 28 4 HOH HOH 471 A HOH 47 4 HOH HOH 472 A HOH 5 4 HOH HOH 473 A HOH 7 4 HOH HOH 474 A HOH 62 4 HOH HOH 475 A HOH 33 4 HOH HOH 476 A HOH 98 4 HOH HOH 477 A HOH 50 4 HOH HOH 478 A HOH 24 4 HOH HOH 479 A HOH 17 4 HOH HOH 480 A HOH 59 4 HOH HOH 481 A HOH 141 4 HOH HOH 482 A HOH 119 4 HOH HOH 483 A HOH 80 4 HOH HOH 484 A HOH 18 4 HOH HOH 485 A HOH 93 4 HOH HOH 486 A HOH 112 4 HOH HOH 487 A HOH 46 4 HOH HOH 488 A HOH 70 4 HOH HOH 489 A HOH 89 4 HOH HOH 490 A HOH 36 4 HOH HOH 491 A HOH 99 4 HOH HOH 492 A HOH 95 4 HOH HOH 493 A HOH 115 4 HOH HOH 494 A HOH 122 4 HOH HOH 495 A HOH 78 4 HOH HOH 496 A HOH 19 4 HOH HOH 497 A HOH 136 4 HOH HOH 498 A HOH 133 4 HOH HOH 499 A HOH 52 4 HOH HOH 500 A HOH 118 4 HOH HOH 501 A HOH 129 4 HOH HOH 502 A HOH 58 4 HOH HOH 503 A HOH 27 4 HOH HOH 504 A HOH 134 4 HOH HOH 505 A HOH 10 4 HOH HOH 506 A HOH 140 4 HOH HOH 507 A HOH 66 4 HOH HOH 508 A HOH 30 4 HOH HOH 509 A HOH 20 4 HOH HOH 510 A HOH 127 4 HOH HOH 511 A HOH 97 4 HOH HOH 512 A HOH 111 4 HOH HOH 513 A HOH 49 4 HOH HOH 514 A HOH 106 4 HOH HOH 515 A HOH 101 4 HOH HOH 516 A HOH 32 4 HOH HOH 517 A HOH 90 4 HOH HOH 518 A HOH 109 4 HOH HOH 519 A HOH 13 4 HOH HOH 520 A HOH 137 4 HOH HOH 521 A HOH 57 4 HOH HOH 522 A HOH 42 4 HOH HOH 523 A HOH 105 4 HOH HOH 524 A HOH 144 4 HOH HOH 525 A HOH 81 4 HOH HOH 526 A HOH 100 4 HOH HOH 527 A HOH 123 4 HOH HOH 528 A HOH 117 4 HOH HOH 529 A HOH 145 4 HOH HOH 530 A HOH 108 4 HOH HOH 531 A HOH 55 4 HOH HOH 532 A HOH 44 4 HOH HOH 533 A HOH 53 4 HOH HOH 534 A HOH 56 4 HOH HOH 535 A HOH 116 4 HOH HOH 536 A HOH 135 4 HOH HOH 537 A HOH 83 4 HOH HOH 538 A n 1 1 A n 2 2 A ASP 3 n 3 ASP 3 A ILE 4 n 4 ILE 4 A ALA 5 n 5 ALA 5 A HIS 6 n 6 HIS 6 A ASN 7 n 7 ASN 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A GLN 10 n 10 GLN 10 A VAL 11 n 11 VAL 11 A ARG 12 n 12 ARG 12 A ASP 13 n 13 ASP 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A SER 16 n 16 SER 16 A ALA 17 n 17 ALA 17 A ALA 18 n 18 ALA 18 A ALA 19 n 19 ALA 19 A THR 20 n 20 THR 20 A ARG 21 n 21 ARG 21 A CYS 22 n 22 CYS 22 A GLY 23 n 23 GLY 23 A ARG 24 n 24 ARG 24 A SER 25 n 25 SER 25 A PRO 26 n 26 PRO 26 A GLU 27 n 27 GLU 27 A GLU 28 n 28 GLU 28 A ILE 29 n 29 ILE 29 A THR 30 n 30 THR 30 A LEU 31 n 31 LEU 31 A LEU 32 n 32 LEU 32 A ALA 33 n 33 ALA 33 A VAL 34 n 34 VAL 34 A SER 35 n 35 SER 35 A ALA 36 n 36 ALA 36 A THR 37 n 37 THR 37 A LYS 38 n 38 LYS 38 A PRO 39 n 39 PRO 39 A ALA 40 n 40 ALA 40 A SER 41 n 41 SER 41 A ALA 42 n 42 ALA 42 A ILE 43 n 43 ILE 43 A ALA 44 n 44 ALA 44 A GLU 45 n 45 GLU 45 A ALA 46 n 46 ALA 46 A ILE 47 n 47 ILE 47 A ASP 48 n 48 ASP 48 A ALA 49 n 49 ALA 49 A GLY 50 n 50 GLY 50 A GLN 51 n 51 GLN 51 A ARG 52 n 52 ARG 52 A GLN 53 n 53 GLN 53 A PHE 54 n 54 PHE 54 A GLY 55 n 55 GLY 55 A GLU 56 n 56 GLU 56 A ASN 57 n 57 ASN 57 A TYR 58 n 58 TYR 58 A VAL 59 n 59 VAL 59 A GLN 60 n 60 GLN 60 A GLU 61 n 61 GLU 61 A GLY 62 n 62 GLY 62 A VAL 63 n 63 VAL 63 A ASP 64 n 64 ASP 64 A LYS 65 n 65 LYS 65 A ILE 66 n 66 ILE 66 A ARG 67 n 67 ARG 67 A HIS 68 n 68 HIS 68 A PHE 69 n 69 PHE 69 A GLN 70 n 70 GLN 70 A GLU 71 n 71 GLU 71 A LEU 72 n 72 LEU 72 A GLY 73 n 73 GLY 73 A VAL 74 n 74 VAL 74 A THR 75 n 75 THR 75 A GLY 76 n 76 GLY 76 A LEU 77 n 77 LEU 77 A GLU 78 n 78 GLU 78 A TRP 79 n 79 TRP 79 A HIS 80 n 80 HIS 80 A PHE 81 n 81 PHE 81 A ILE 82 n 82 ILE 82 A GLY 83 n 83 GLY 83 A PRO 84 n 84 PRO 84 A LEU 85 n 85 LEU 85 A GLN 86 n 86 GLN 86 A SER 87 n 87 SER 87 A ASN 88 n 88 ASN 88 A LYS 89 n 89 LYS 89 A SER 90 n 90 SER 90 A ARG 91 n 91 ARG 91 A LEU 92 n 92 LEU 92 A VAL 93 n 93 VAL 93 A ALA 94 n 94 ALA 94 A GLU 95 n 95 GLU 95 A HIS 96 n 96 HIS 96 A PHE 97 n 97 PHE 97 A ASP 98 n 98 ASP 98 A TRP 99 n 99 TRP 99 A CYS 100 n 100 CYS 100 A HIS 101 n 101 HIS 101 A THR 102 n 102 THR 102 A ILE 103 n 103 ILE 103 A ASP 104 n 104 ASP 104 A ARG 105 n 105 ARG 105 A LEU 106 n 106 LEU 106 A ARG 107 n 107 ARG 107 A ILE 108 n 108 ILE 108 A ALA 109 n 109 ALA 109 A THR 110 n 110 THR 110 A ARG 111 n 111 ARG 111 A LEU 112 n 112 LEU 112 A ASN 113 n 113 ASN 113 A ASP 114 n 114 ASP 114 A GLN 115 n 115 GLN 115 A ARG 116 n 116 ARG 116 A PRO 117 n 117 PRO 117 A ALA 118 n 118 ALA 118 A GLU 119 n 119 GLU 119 A LEU 120 n 120 LEU 120 A PRO 121 n 121 PRO 121 A PRO 122 n 122 PRO 122 A LEU 123 n 123 LEU 123 A ASN 124 n 124 ASN 124 A VAL 125 n 125 VAL 125 A LEU 126 n 126 LEU 126 A ILE 127 n 127 ILE 127 A GLN 128 n 128 GLN 128 A ILE 129 n 129 ILE 129 A ASN 130 n 130 ASN 130 A ILE 131 n 131 ILE 131 A SER 132 n 132 SER 132 A ASP 133 n 133 ASP 133 A GLU 134 n 134 GLU 134 A ASN 135 n 135 ASN 135 A SER 136 n 136 SER 136 A ALA 137 n 137 ALA 137 A SER 138 n 138 SER 138 A GLY 139 n 139 GLY 139 A ILE 140 n 140 ILE 140 A GLN 141 n 141 GLN 141 A LEU 142 n 142 LEU 142 A ALA 143 n 143 ALA 143 A GLU 144 n 144 GLU 144 A LEU 145 n 145 LEU 145 A ASP 146 n 146 ASP 146 A GLU 147 n 147 GLU 147 A LEU 148 n 148 LEU 148 A ALA 149 n 149 ALA 149 A ALA 150 n 150 ALA 150 A ALA 151 n 151 ALA 151 A VAL 152 n 152 VAL 152 A ALA 153 n 153 ALA 153 A GLU 154 n 154 GLU 154 A LEU 155 n 155 LEU 155 A PRO 156 n 156 PRO 156 A ARG 157 n 157 ARG 157 A LEU 158 n 158 LEU 158 A ARG 159 n 159 ARG 159 A LEU 160 n 160 LEU 160 A ARG 161 n 161 ARG 161 A GLY 162 n 162 GLY 162 A LEU 163 n 163 LEU 163 A MET 164 n 164 MET 164 A ALA 165 n 165 ALA 165 A ILE 166 n 166 ILE 166 A PRO 167 n 167 PRO 167 A ALA 168 n 168 ALA 168 A PRO 169 n 169 PRO 169 A GLU 170 n 170 GLU 170 A SER 171 n 171 SER 171 A GLU 172 n 172 GLU 172 A TYR 173 n 173 TYR 173 A VAL 174 n 174 VAL 174 A ARG 175 n 175 ARG 175 A GLN 176 n 176 GLN 176 A PHE 177 n 177 PHE 177 A GLU 178 n 178 GLU 178 A VAL 179 n 179 VAL 179 A ALA 180 n 180 ALA 180 A ARG 181 n 181 ARG 181 A GLN 182 n 182 GLN 182 A MET 183 n 183 MET 183 A ALA 184 n 184 ALA 184 A VAL 185 n 185 VAL 185 A ALA 186 n 186 ALA 186 A PHE 187 n 187 PHE 187 A ALA 188 n 188 ALA 188 A GLY 189 n 189 GLY 189 A LEU 190 n 190 LEU 190 A LYS 191 n 191 LYS 191 A THR 192 n 192 THR 192 A ARG 193 n 193 ARG 193 A TYR 194 n 194 TYR 194 A PRO 195 n 195 PRO 195 A HIS 196 n 196 HIS 196 A ILE 197 n 197 ILE 197 A ASP 198 n 198 ASP 198 A THR 199 n 199 THR 199 A LEU 200 n 200 LEU 200 A SER 201 n 201 SER 201 A LEU 202 n 202 LEU 202 A GLY 203 n 203 GLY 203 A MET 204 n 204 MET 204 A SER 205 n 205 SER 205 A ASP 206 n 206 ASP 206 A ASP 207 n 207 ASP 207 A MET 208 n 208 MET 208 A GLU 209 n 209 GLU 209 A ALA 210 n 210 ALA 210 A ALA 211 n 211 ALA 211 A ILE 212 n 212 ILE 212 A ALA 213 n 213 ALA 213 A ALA 214 n 214 ALA 214 A GLY 215 n 215 GLY 215 A SER 216 n 216 SER 216 A THR 217 n 217 THR 217 A MET 218 n 218 MET 218 A VAL 219 n 219 VAL 219 A ARG 220 n 220 ARG 220 A ILE 221 n 221 ILE 221 A GLY 222 n 222 GLY 222 A THR 223 n 223 THR 223 A ALA 224 n 224 ALA 224 A ILE 225 n 225 ILE 225 A PHE 226 n 226 PHE 226 A GLY 227 n 227 GLY 227 A ALA 228 n 228 ALA 228 A n 229 229 A n 230 230 A n 231 231 A n 232 232 A n 233 233 A n 234 234 A author_and_software_defined_assembly PISA 1 monomeric native gel electrophoresis 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 33 A N ALA 33 A O GLY 55 A O GLY 55 A N PHE 54 A N PHE 54 A O HIS 80 A O HIS 80 A N PHE 81 A N PHE 81 A O TRP 99 A O TRP 99 A N CYS 100 A N CYS 100 A O LEU 126 A O LEU 126 A N ILE 129 A N ILE 129 A O MET 164 A O MET 164 A N LEU 163 A N LEU 163 A O SER 201 A O SER 201 A O LEU 200 A O LEU 200 A N MET 218 A N MET 218 A O VAL 219 A O VAL 219 A N LEU 32 A N LEU 32 1 A HOH 532 F HOH 1 A MET 1 A MET 1 1 Y 1 A ASN 2 A ASN 2 1 Y 1 A ARG 229 A ARG 229 1 Y 1 A ASP 230 A ASP 230 1 Y 1 A TYR 231 A TYR 231 1 Y 1 A SER 232 A SER 232 1 Y 1 A LYS 233 A LYS 233 1 Y 1 A LYS 234 A LYS 234 1 Y 1 A A OG O3P SER PLP 205 301 2.10 1 A THR 37 59.80 -2.81 1 A SER 132 -152.99 21.31 94.020 36.0248 17.830 0.2447 0.1849 0.1878 2.3000 28.3740 745 13996 14741 5.0500 99.8300 0.2900 1 THROUGHOUT 1.340 MOLECULAR REPLACEMENT 23.4500 0.9000 1.1100 1w8g ML FLAT BULK SOLVENT MODEL 2.3000 28.3740 138 1912 66.80 40.47 42 0 1732 226 0.3134 0.0000 0.2374 2.4776 150 2729 100.0000 0.2912 0.0000 0.2234 2.7267 143 2764 100.0000 0.2985 0.0000 0.2143 3.1209 167 2763 100.0000 0.2543 0.0000 0.1750 3.9303 141 2804 100.0000 0.1810 0.0000 0.1573 28.3740 144 2936 100.0000 34.430 2.300 28.550 7UBP 14772 1.000 0.056 0.016 0.059 1 31.000 187743 12.700 16 99.900 0.331 2.300 2.380 18149 1423 0.982 0.096 0.344 1 8.600 12.800 100.000 0.019 8.910 28.550 3235 286 1.000 0.005 0.019 1 71.800 11.300 96.800 refinement PHENIX 1.13_2998 data scaling Aimless 0.5.32 data extraction PDB_EXTRACT 3.27 data reduction CrysalisPro 41.64.69a phasing PHASER N The crystal structure of the K36A/K137A double mutant of E. coli YGGS in complex with PLP 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N A ASP 3 A ASP 3 HELX_P A CYS 22 A CYS 22 1 AA1 20 A SER 25 A SER 25 HELX_P A ILE 29 A ILE 29 5 AA2 5 A PRO 39 A PRO 39 HELX_P A ALA 49 A ALA 49 1 AA3 11 A TYR 58 A TYR 58 HELX_P A LEU 72 A LEU 72 1 AA4 15 A GLN 86 A GLN 86 HELX_P A ASN 88 A ASN 88 5 AA5 3 A LYS 89 A LYS 89 HELX_P A PHE 97 A PHE 97 1 AA6 9 A ARG 105 A ARG 105 HELX_P A ARG 116 A ARG 116 1 AA7 12 A GLN 141 A GLN 141 HELX_P A ALA 143 A ALA 143 5 AA8 3 A GLU 144 A GLU 144 HELX_P A GLU 154 A GLU 154 1 AA9 11 A GLU 172 A GLU 172 HELX_P A TYR 194 A TYR 194 1 AB1 23 A ASP 207 A ASP 207 HELX_P A GLY 215 A GLY 215 1 AB2 9 A GLY 222 A GLY 222 HELX_P A GLY 227 A GLY 227 1 AB3 6 PROTEIN TRANSPORT PLP-binding protein, Vitamin B6, PLP homeostasis, PROTEIN TRANSPORT C3SV52_ECOLX UNP 1 1 C3SV52 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWH FIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 1 234 7UBP 1 234 C3SV52 A 1 1 234 1 LYS engineered mutation ALA 36 7UBP A C3SV52 UNP 36 36 1 LYS engineered mutation ALA 137 7UBP A C3SV52 UNP 137 137 9 parallel parallel parallel parallel parallel parallel parallel parallel A THR 30 A THR 30 A VAL 34 A VAL 34 A GLN 53 A GLN 53 A GLU 56 A GLU 56 A GLU 78 A GLU 78 A PHE 81 A PHE 81 A TRP 99 A TRP 99 A ILE 103 A ILE 103 A LEU 123 A LEU 123 A ILE 129 A ILE 129 A LEU 158 A LEU 158 A ALA 165 A ALA 165 A THR 199 A THR 199 A SER 201 A SER 201 A MET 218 A MET 218 A ILE 221 A ILE 221 A THR 30 A THR 30 A VAL 34 A VAL 34 98 I 41 2 2