0.023416 0.000000 0.008008 0.000000 0.021992 0.000000 0.000000 0.000000 0.018190 0.00000 0.00000 0.00000 Trinh, N.T. Cambillau, C. Leone, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 108.880 90.000 42.706 45.471 58.100 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Acta Crystallogr.,Sect.F ACSFEN 2053-230X 77 171 176 10.1107/S2053230X21005185 34100775 Crystal structures of two camelid nanobodies raised against GldL, a component of the type IX secretion system from Flavobacterium johnsoniae. 2021 10.2210/pdb7bnp/pdb pdb_00007bnp 100 1 N PIXEL 2018-01-09 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.978 1.0 PROXIMA 1 SOLEIL 0.978 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 14196.648 nanobody nb17 1 man polymer 18.015 water 60 nat water no no MAQVQLVESGGGLVQAGGSLRLSCAASGRTFRNYYMGWFRQAPGKERDIVAAISWSGGSTYYADSVKGRFTISRDNAKNT VYLQMNSLKPEDTAVYYCNARSGGSAWQGDFGSWGQGTQVTVSSHHHHHH MAQVQLVESGGGLVQAGGSLRLSCAASGRTFRNYYMGWFRQAPGKERDIVAAISWSGGSTYYADSVKGRFTISRDNAKNT VYLQMNSLKPEDTAVYYCNARSGGSAWQGDFGSWGQGTQVTVSSHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Llama sample 1 130 9844 Lama glama 469008 Escherichia coli BL21(DE3) Biological sequence 1 1.88 34.57 VAPOR DIFFUSION, SITTING DROP 8.5 100mM Tris pH 8.5, 25% PEG 3350 293 citation citation_author chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_entry_details pdbx_modification_feature repository Initial release Database references Data collection Database references Refinement description Structure summary 1 0 2021-05-26 1 1 2021-06-23 1 2 2024-01-31 1 3 2024-10-09 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession France Agence Nationale de la Recherche (ANR) ANR-15-CE11-0019-01 N PDBE Y PDBE 2021-01-22 REL REL HOH water Y 1KXQ PDB experimental model A CYS 22 Disulfide bridge SG A CYS 24 A CYS 92 SG A CYS 98 1_555 1_555 None HOH 41 2 HOH HOH 201 A HOH 27 2 HOH HOH 202 A HOH 42 2 HOH HOH 203 A HOH 17 2 HOH HOH 204 A HOH 32 2 HOH HOH 205 A HOH 3 2 HOH HOH 206 A HOH 8 2 HOH HOH 207 A HOH 14 2 HOH HOH 208 A HOH 54 2 HOH HOH 209 A HOH 4 2 HOH HOH 210 A HOH 22 2 HOH HOH 211 A HOH 23 2 HOH HOH 212 A HOH 11 2 HOH HOH 213 A HOH 53 2 HOH HOH 214 A HOH 13 2 HOH HOH 215 A HOH 21 2 HOH HOH 216 A HOH 36 2 HOH HOH 217 A HOH 34 2 HOH HOH 218 A HOH 45 2 HOH HOH 219 A HOH 30 2 HOH HOH 220 A HOH 38 2 HOH HOH 221 A HOH 25 2 HOH HOH 222 A HOH 2 2 HOH HOH 223 A HOH 1 2 HOH HOH 224 A HOH 50 2 HOH HOH 225 A HOH 60 2 HOH HOH 226 A HOH 6 2 HOH HOH 227 A HOH 29 2 HOH HOH 228 A HOH 20 2 HOH HOH 229 A HOH 26 2 HOH HOH 230 A HOH 7 2 HOH HOH 231 A HOH 33 2 HOH HOH 232 A HOH 59 2 HOH HOH 233 A HOH 55 2 HOH HOH 234 A HOH 10 2 HOH HOH 235 A HOH 57 2 HOH HOH 236 A HOH 5 2 HOH HOH 237 A HOH 18 2 HOH HOH 238 A HOH 9 2 HOH HOH 239 A HOH 46 2 HOH HOH 240 A HOH 28 2 HOH HOH 241 A HOH 39 2 HOH HOH 242 A HOH 19 2 HOH HOH 243 A HOH 31 2 HOH HOH 244 A HOH 35 2 HOH HOH 245 A HOH 16 2 HOH HOH 246 A HOH 12 2 HOH HOH 247 A HOH 24 2 HOH HOH 248 A HOH 51 2 HOH HOH 249 A HOH 37 2 HOH HOH 250 A HOH 47 2 HOH HOH 251 A HOH 56 2 HOH HOH 252 A HOH 48 2 HOH HOH 253 A HOH 15 2 HOH HOH 254 A HOH 58 2 HOH HOH 255 A HOH 44 2 HOH HOH 256 A HOH 40 2 HOH HOH 257 A HOH 49 2 HOH HOH 258 A HOH 52 2 HOH HOH 259 A HOH 43 2 HOH HOH 260 A n 1 -1 A n 2 0 A n 3 1 A VAL 2 n 4 VAL 2 A GLN 3 n 5 GLN 3 A LEU 4 n 6 LEU 4 A VAL 5 n 7 VAL 5 A GLU 6 n 8 GLU 6 A SER 7 n 9 SER 7 A GLY 8 n 10 GLY 8 A GLY 9 n 11 GLY 9 A GLY 10 n 12 GLY 10 A LEU 11 n 13 LEU 11 A VAL 12 n 14 VAL 12 A GLN 13 n 15 GLN 13 A ALA 14 n 16 ALA 14 A GLY 15 n 17 GLY 15 A GLY 16 n 18 GLY 16 A SER 17 n 19 SER 17 A LEU 18 n 20 LEU 18 A ARG 19 n 21 ARG 19 A LEU 20 n 22 LEU 20 A SER 21 n 23 SER 21 A CYS 22 n 24 CYS 22 A ALA 23 n 25 ALA 23 A ALA 24 n 26 ALA 24 A n 27 25 A n 28 26 A n 29 27 A n 30 28 A n 31 29 A n 32 30 A ASN 31 n 33 ASN 31 A TYR 32 n 34 TYR 32 A TYR 33 n 35 TYR 33 A MET 34 n 36 MET 34 A GLY 35 n 37 GLY 35 A TRP 36 n 38 TRP 36 A PHE 37 n 39 PHE 37 A ARG 38 n 40 ARG 38 A GLN 39 n 41 GLN 39 A ALA 40 n 42 ALA 40 A PRO 41 n 43 PRO 41 A GLY 42 n 44 GLY 42 A LYS 43 n 45 LYS 43 A GLU 44 n 46 GLU 44 A ARG 45 n 47 ARG 45 A ASP 46 n 48 ASP 46 A ILE 47 n 49 ILE 47 A VAL 48 n 50 VAL 48 A ALA 49 n 51 ALA 49 A ALA 50 n 52 ALA 50 A ILE 51 n 53 ILE 51 A SER 52 n 54 SER 52 A TRP 52 n 55 A TRP 52 A SER 53 n 56 SER 53 A GLY 54 n 57 GLY 54 A GLY 55 n 58 GLY 55 A SER 56 n 59 SER 56 A THR 57 n 60 THR 57 A TYR 58 n 61 TYR 58 A TYR 59 n 62 TYR 59 A ALA 60 n 63 ALA 60 A ASP 61 n 64 ASP 61 A SER 62 n 65 SER 62 A VAL 63 n 66 VAL 63 A LYS 64 n 67 LYS 64 A GLY 65 n 68 GLY 65 A ARG 66 n 69 ARG 66 A PHE 67 n 70 PHE 67 A THR 68 n 71 THR 68 A ILE 69 n 72 ILE 69 A SER 70 n 73 SER 70 A ARG 71 n 74 ARG 71 A ASP 72 n 75 ASP 72 A ASN 73 n 76 ASN 73 A ALA 74 n 77 ALA 74 A LYS 75 n 78 LYS 75 A ASN 76 n 79 ASN 76 A THR 77 n 80 THR 77 A VAL 78 n 81 VAL 78 A TYR 79 n 82 TYR 79 A LEU 80 n 83 LEU 80 A GLN 81 n 84 GLN 81 A MET 82 n 85 MET 82 A ASN 82 n 86 A ASN 82 A SER 82 n 87 B SER 82 A LEU 82 n 88 C LEU 82 A LYS 83 n 89 LYS 83 A PRO 84 n 90 PRO 84 A GLU 85 n 91 GLU 85 A ASP 86 n 92 ASP 86 A THR 87 n 93 THR 87 A ALA 88 n 94 ALA 88 A VAL 89 n 95 VAL 89 A TYR 90 n 96 TYR 90 A TYR 91 n 97 TYR 91 A CYS 92 n 98 CYS 92 A ASN 93 n 99 ASN 93 A ALA 94 n 100 ALA 94 A ARG 95 n 101 ARG 95 A SER 96 n 102 SER 96 A GLY 97 n 103 GLY 97 A GLY 98 n 104 GLY 98 A SER 99 n 105 SER 99 A ALA 100 n 106 ALA 100 A TRP 100 n 107 A TRP 100 A GLN 100 n 108 B GLN 100 A GLY 100 n 109 C GLY 100 A ASP 100 n 110 D ASP 100 A PHE 100 n 111 E PHE 100 A GLY 106 n 112 GLY 101 A SER 107 n 113 SER 102 A TRP 108 n 114 TRP 103 A GLY 109 n 115 GLY 104 A GLN 110 n 116 GLN 105 A GLY 111 n 117 GLY 106 A THR 112 n 118 THR 107 A GLN 113 n 119 GLN 108 A VAL 114 n 120 VAL 109 A THR 115 n 121 THR 110 A VAL 116 n 122 VAL 111 A SER 117 n 123 SER 112 A SER 118 n 124 SER 113 A HIS 119 n 125 HIS 114 A n 126 115 A n 127 116 A n 128 117 A n 129 118 A n 130 119 A 5.9540 0.1007 3.8162 0.8525 -1.9042 5.6058 -0.1582 -0.4902 -0.2965 -0.0335 0.0862 -0.1608 -0.2625 0.4076 0.0720 -0.0483 0.0611 -0.0136 0.0948 0.0517 0.0479 refined 26.2167 0.3616 13.3380 X-RAY DIFFRACTION 3.4784 2.7906 -0.1301 3.7562 0.8341 0.3883 -0.0932 0.1241 -0.0373 0.0322 0.0939 -0.0317 0.1418 -0.2614 -0.0007 -0.0158 -0.0444 0.0027 0.0303 -0.0036 0.0255 refined 12.5367 -1.3032 -3.9755 X-RAY DIFFRACTION 4.9713 -0.1173 3.3350 0.0716 -2.1116 5.8656 -0.2384 -0.3191 -0.5727 -0.0879 0.0659 -0.1834 0.2225 0.0360 0.1725 0.0106 0.0614 0.0200 -0.0178 0.0815 0.0680 refined 20.2238 -4.9525 8.9016 X-RAY DIFFRACTION 7.2119 -3.6956 1.4248 8.3154 1.8121 9.4190 -0.0564 -0.6911 0.7109 0.2862 0.5430 -0.4773 -0.3776 0.3389 -0.4866 0.3207 0.1125 0.0326 0.3040 0.1408 -0.0294 refined 20.0588 -1.6980 25.7955 X-RAY DIFFRACTION 3.7057 -0.1212 -0.4455 0.3533 2.1378 3.1693 -0.0394 -0.4405 0.0281 0.2420 0.0283 0.2084 -0.2871 -0.3027 0.0111 0.0095 0.0744 0.0015 0.0204 0.0152 -0.0326 refined 14.1465 5.1026 12.1336 X-RAY DIFFRACTION 5.1240 2.4663 2.2795 8.3154 -2.1911 3.0836 0.2505 -0.3644 0.4173 0.1957 0.1300 0.3653 -0.3433 0.1210 -0.3805 0.0935 0.1640 -0.0141 -0.0093 -0.0098 -0.0238 refined 11.5714 13.2404 9.9985 X-RAY DIFFRACTION 0.7944 0.0104 -1.6565 8.3154 2.4323 2.8953 0.0787 -0.3819 0.0711 0.4016 -0.3189 0.4684 0.2040 -0.5653 0.2402 0.0137 0.0255 0.0762 0.0681 0.0678 -0.0720 refined 11.7280 0.2209 17.6861 X-RAY DIFFRACTION 3.6439 -1.8215 -2.1468 1.4222 -3.6681 -0.3185 0.0361 -0.2470 -0.0555 0.4500 0.4485 -0.4213 0.2628 0.4372 -0.4847 0.2518 0.0946 0.1133 0.2568 0.1930 0.0871 refined 14.0486 -8.7924 24.8759 X-RAY DIFFRACTION 8.0396 -2.8053 0.3561 5.1703 -0.7912 8.5913 -0.1074 -0.3239 0.0699 0.3724 -0.5270 0.5875 -0.0010 -0.6859 0.6344 -0.0881 0.0080 0.1197 0.1111 -0.0367 -0.0144 refined 5.0437 -0.8745 15.6454 X-RAY DIFFRACTION 4.8639 -3.6370 -0.9341 6.8512 1.6406 3.5747 0.1048 0.1572 -0.5155 0.4212 -0.3604 0.0712 -0.1309 -0.5214 0.2555 -0.0717 -0.0094 0.0642 0.1111 0.0384 0.0151 refined 5.3840 -3.7644 9.3563 X-RAY DIFFRACTION 6.4789 3.6956 2.4598 8.3154 -1.8121 9.6331 0.0069 -0.5160 -0.5421 0.6706 -0.0084 -0.3458 0.5464 0.2217 0.0015 0.1171 0.0309 0.0540 0.0050 0.1369 0.0508 refined 16.5519 -9.2554 16.1713 X-RAY DIFFRACTION 8.2653 -1.8121 1.4866 8.3154 -3.6956 0.0502 0.0972 -0.6911 -0.5259 0.6911 -0.1470 -0.3389 0.5626 0.3389 0.0498 0.2181 0.1026 -0.0519 0.2287 0.1696 0.1781 refined 24.4792 -10.1195 17.5122 X-RAY DIFFRACTION 6.0377 1.5339 3.7500 0.1011 0.4871 5.8605 -0.3957 -0.0454 -0.4247 0.1032 0.1894 0.1139 0.3524 -0.2774 0.2063 0.0134 -0.0119 0.0280 -0.0340 0.0547 0.0493 refined 13.4486 -6.4852 7.6410 X-RAY DIFFRACTION 6.3672 1.7921 3.8666 8.3154 -0.0246 1.9088 -0.3792 -0.3389 -0.0446 0.0381 0.1748 0.5145 -0.0907 -0.6911 0.2044 -0.0677 0.0493 -0.0089 0.0877 0.0076 0.0443 refined 6.6025 2.2460 1.8133 X-RAY DIFFRACTION 4.0412 0.7065 2.3603 0.0000 0.1751 3.8547 -0.0241 -0.1139 -0.0274 0.0465 -0.0632 0.1145 -0.2181 -0.1243 0.0873 0.0286 0.0631 -0.0047 -0.0260 0.0239 -0.0011 refined 16.4613 5.5493 8.4406 X-RAY DIFFRACTION 0.7587 -0.9542 -1.2870 0.0148 -3.4022 1.0400 0.0018 -0.4759 -0.0731 0.4069 0.0649 0.3230 0.0889 0.1234 -0.0667 0.1191 0.0600 0.0299 0.2414 0.0624 -0.1202 refined 18.3274 3.8289 25.7583 X-RAY DIFFRACTION 10.0977 -1.8121 -2.3009 5.1445 -3.6956 6.5332 -0.0430 -0.3741 0.6280 -0.1839 0.2706 0.3017 -0.2412 -0.1000 -0.2276 0.0779 -0.1666 -0.0133 0.1842 0.0174 -0.0735 refined 10.6031 7.7391 32.2212 X-RAY DIFFRACTION -1.6588 -3.6761 1.9400 0.6662 1.7550 2.8377 0.2738 0.5016 -0.1133 0.0337 -0.3065 0.0150 -0.0836 -0.4035 0.0327 0.0258 0.0069 -0.0203 0.1295 -0.0235 -0.0734 refined 1.8456 7.0646 36.6173 X-RAY DIFFRACTION 6.8379 0.4841 2.5071 0.0000 -0.5362 6.2870 -0.1989 0.0590 0.1380 -0.0100 0.0647 -0.1246 -0.2998 0.0019 0.1342 0.0285 -0.0152 -0.0036 -0.0558 -0.0191 0.0137 refined 7.1532 4.5392 52.9219 X-RAY DIFFRACTION -1.1305 -1.8121 2.5238 0.0000 -3.6956 1.8584 -0.1339 -0.4491 -0.2312 0.2900 0.1164 -0.4760 0.4772 0.4216 0.0175 -0.0377 0.0211 -0.0295 0.1810 0.0154 0.1122 refined 17.1841 1.3554 62.8493 X-RAY DIFFRACTION A 2 A 9 X-RAY DIFFRACTION 1 { A|2 - A|9 } A 10 A 16 X-RAY DIFFRACTION 2 { A|10 - A|16 } A 17 A 24 X-RAY DIFFRACTION 3 { A|17 - A|24 } A 31 A 34 X-RAY DIFFRACTION 4 { A|31 - A|34 } A 35 A 40 X-RAY DIFFRACTION 5 { A|35 - A|40 } A 41 A 45 X-RAY DIFFRACTION 6 { A|41 - A|45 } A 46 A 52 X-RAY DIFFRACTION 7 { A|46 - A|52 } A 58 A 62 X-RAY DIFFRACTION 9 { A|58 - A|62 } A 63 A 67 X-RAY DIFFRACTION 10 { A|63 - A|67 } A 68 A 72 X-RAY DIFFRACTION 11 { A|68 - A|72 } A 73 A 78 X-RAY DIFFRACTION 12 { A|73 - A|78 } A 87 A 92 X-RAY DIFFRACTION 15 { A|87 - A|92 } A 93 A 99 X-RAY DIFFRACTION 16 { A|93 - A|99 } A 111 A 116 X-RAY DIFFRACTION 19 { A|111 - A|116 } A 117 A 119 X-RAY DIFFRACTION 20 { A|117 - A|119 } author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric light scattering 0 0 8380 5340 -26 11410 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 23.9055864467 0.0000000000 54.9741252793 A N VAL 5 A N VAL 7 A O ALA 23 A O ALA 25 A N LEU 18 A N LEU 20 A O MET 82 A O MET 85 A O GLN 81 A O GLN 84 A N THR 68 A N THR 71 A O TYR 58 A O TYR 61 A N ALA 50 A N ALA 52 A O ALA 49 A O ALA 51 A N TRP 36 A N TRP 38 A N PHE 37 A N PHE 39 A O TYR 91 A O TYR 97 1 A MET -1 A MET 1 1 Y 1 A ALA 0 A ALA 2 1 Y 1 A GLN 1 A GLN 3 1 Y 1 A SER 25 A SER 27 1 Y 1 A GLY 26 A GLY 28 1 Y 1 A ARG 27 A ARG 29 1 Y 1 A THR 28 A THR 30 1 Y 1 A PHE 29 A PHE 31 1 Y 1 A ARG 30 A ARG 32 1 Y 1 A HIS 115 A HIS 126 1 Y 1 A HIS 116 A HIS 127 1 Y 1 A HIS 117 A HIS 128 1 Y 1 A HIS 118 A HIS 129 1 Y 1 A HIS 119 A HIS 130 1 Y 77.620 45.0100 25.200 -1.4161 0.0000 -4.9854 -3.6020 0.0000 5.0181 0.9460 0.9500 0.2261 0.2130 0.2141 1.7000 30.2000 881 11209 7.8600 95.9000 0.1300 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1320 0.1130 0.1130 1KXQ 0.240 1.7000 30.2000 60 937 52.60 0 0 877 116 298 SINUSOIDAL 2.000 157 HARMONIC 5.000 904 HARMONIC 10.000 110 SEMIHARMONIC 5.000 728 SEMIHARMONIC 4.000 0.009 904 HARMONIC 2.000 0.950 1224 HARMONIC 2.000 3.500 16.040 0.2568 0.0000 0.3073 0.3045 1.7200 13 242 255 45 5.1000 85.0000 1.67 30.2 7BNP 11641 0.999 1 15.2 3.1 95.0 1.67 1.79 6051 0.64 1 refinement BUSTER 2.10.4 (11-DEC-2020) data extraction PDB_EXTRACT 3.27 data reduction XDS data scaling XSCALE phasing MOLREP N Llama nanobody nb17 raised against GldL from Flavobacterium jonhsoniae 1 N N 2 N N A ASN 73 A ASN 76 HELX_P A LYS 75 A LYS 78 5 AA1 3 A LYS 83 A LYS 89 HELX_P A THR 87 A THR 93 5 AA2 5 A SER 96 A SER 102 HELX_P A TRP 100 A TRP 107 1 AA3 6 A disulf 2.056 A CYS 22 A SG CYS 24 1_555 A CYS 92 A SG CYS 98 1_555 IMMUNE SYSTEM nanobody, type IX secretion system, IMMUNE SYSTEM 7BNP PDB 1 1 7BNP -1 119 7BNP -1 119 7BNP A 1 1 130 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 5 A VAL 7 A SER 7 A SER 9 A LEU 18 A LEU 20 A ALA 23 A ALA 25 A THR 77 A THR 80 A MET 82 A MET 85 A PHE 67 A PHE 70 A ASP 72 A ASP 75 A THR 57 A THR 60 A TYR 59 A TYR 62 A ARG 45 A ARG 47 A ILE 51 A ILE 53 A TYR 33 A TYR 35 A GLN 39 A GLN 41 A VAL 89 A VAL 95 A ARG 95 A ARG 101 5 C 1 2 1