0.026364 0.000000 0.003879 0.000000 0.019283 0.000000 0.000000 0.000000 0.008070 0.000000 0.000000 0.000000 0000-0001-6365-4229 Fieulaine, S. 0000-0002-0921-6727 Bressanelli, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 98.370 90.000 37.930 51.860 125.250 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C5 H11 N O2 117.146 METHYL 4-AMINOBUTANOATE peptide-like C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N C N 141 N C N 142 N O N 143 N O N 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C Y 161 N C Y 162 N N Y 163 N C Y 164 N C Y 165 N N N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N N N 178 S C N 179 N C N 180 N O N 181 S C N 182 N C N 183 N C N 184 N C N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 N C N 204 N C N 205 N C N 206 N C N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N C N 229 N N N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 N C N 251 N C N 252 N S N 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N C N 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N O N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 R C N 325 N O N 326 N C N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N N Y 346 N C Y 347 N C Y 348 N C Y 349 N C Y 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C N 375 N O N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C N 393 N C N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing Y 158 N sing Y 159 N doub Y 160 N doub N 161 N sing Y 162 N sing N 163 N sing Y 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing Y 264 N doub Y 265 N sing Y 266 N sing N 267 N sing Y 268 N doub N 269 N sing Y 270 N doub N 271 N sing Y 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub Y 338 N sing Y 339 N sing N 340 N sing Y 341 N sing Y 342 N doub N 343 N sing Y 344 N doub N 345 N sing Y 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N doub N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing US J.Biol.Chem. JBCHA3 0071 1083-351X X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin 2020 0000-0001-6365-4229 0000-0002-0921-6727 10.2210/pdb6ypt/pdb pdb_00006ypt 100 1 N PIXEL 2017-07-21 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.97857 1.0 PROXIMA 1 SOLEIL 0.97857 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 17778.873 RNA replicase polyprotein 2.1.1.-,3.4.22.-,3.6.4.-,2.7.7.48 2 man polymer 9735.109 Polyubiquitin-C 2 man polymer 117.146 METHYL 4-AMINOBUTANOATE 2 syn non-polymer 206 kDa polyprotein no no MHHHHHHGSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHL WESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS MHHHHHHGSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHL WESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS A,C polypeptide(L) no no MYPYDVPDYAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV LRLRG MYPYDVPDYAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV LRLRG B,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 160 12154 Turnip yellow mosaic virus 562 Escherichia coli Biological sequence human sample 1 85 UBC 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.21 44.35 VAPOR DIFFUSION, HANGING DROP 21% PEG-20K + 0.1M MES-NaOH pH6.5 291 database_2 entity entity_poly entity_poly_seq entity_src_gen pdbx_poly_seq_scheme pdbx_unobs_or_zero_occ_residues struct_ref struct_ref_seq struct_ref_seq_dif atom_site atom_site_anisotrop chem_comp_atom chem_comp_bond struct_conn struct_ncs_dom_lim pdbx_initial_refinement_model repository Initial release Advisory Database references Polymer sequence Source and taxonomy Structure summary Atomic model Data collection Derived calculations Refinement description Refinement description 1 0 2020-08-05 2 0 2023-03-15 3 0 2023-11-15 3 1 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.formula_weight _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_src_gen.gene_src_common_name _entity_src_gen.pdbx_end_seq_num _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.seq_align_end _struct_ref_seq_dif.pdbx_auth_seq_num _atom_site.auth_atom_id _atom_site.label_atom_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_label_atom_id _struct_conn.pdbx_leaving_atom_flag _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id France French National Research Agency 11-BSV8-011 native protein deltaC5 mutant deltaC5 mutant + I847A mutant N PDBE Y PDBE 2020-04-16 REL REL GVE METHYL 4-AMINOBUTANOATE N 5LW5 PDB experimental model GVE 76 3 GVE GVE 901 A GVE 76 3 GVE GVE 901 C 0.000 n 1 720 A n 2 721 A n 3 722 A n 4 723 A n 5 724 A n 6 725 A n 7 726 A n 8 727 A n 9 728 A n 10 729 A n 11 730 A n 12 731 A LEU 732 n 13 LEU 732 A PRO 733 n 14 PRO 733 A ALA 734 n 15 ALA 734 A PRO 735 n 16 PRO 735 A LEU 736 n 17 LEU 736 A THR 737 n 18 THR 737 A ASN 738 n 19 ASN 738 A ASP 739 n 20 ASP 739 A PRO 740 n 21 PRO 740 A THR 741 n 22 THR 741 A ALA 742 n 23 ALA 742 A ILE 743 n 24 ILE 743 A GLY 744 n 25 GLY 744 A PRO 745 n 26 PRO 745 A VAL 746 n 27 VAL 746 A LEU 747 n 28 LEU 747 A PRO 748 n 29 PRO 748 A PHE 749 n 30 PHE 749 A GLU 750 n 31 GLU 750 A GLU 751 n 32 GLU 751 A LEU 752 n 33 LEU 752 A HIS 753 n 34 HIS 753 A PRO 754 n 35 PRO 754 A ARG 755 n 36 ARG 755 A ARG 756 n 37 ARG 756 A TYR 757 n 38 TYR 757 A PRO 758 n 39 PRO 758 A GLU 759 n 40 GLU 759 A ASN 760 n 41 ASN 760 A THR 761 n 42 THR 761 A ALA 762 n 43 ALA 762 A THR 763 n 44 THR 763 A PHE 764 n 45 PHE 764 A LEU 765 n 46 LEU 765 A THR 766 n 47 THR 766 A ARG 767 n 48 ARG 767 A LEU 768 n 49 LEU 768 A ARG 769 n 50 ARG 769 A SER 770 n 51 SER 770 A LEU 771 n 52 LEU 771 A PRO 772 n 53 PRO 772 A SER 773 n 54 SER 773 A ASN 774 n 55 ASN 774 A HIS 775 n 56 HIS 775 A LEU 776 n 57 LEU 776 A PRO 777 n 58 PRO 777 A GLN 778 n 59 GLN 778 A PRO 779 n 60 PRO 779 A THR 780 n 61 THR 780 A LEU 781 n 62 LEU 781 A ASN 782 n 63 ASN 782 A CYS 783 n 64 CYS 783 A LEU 784 n 65 LEU 784 A LEU 785 n 66 LEU 785 A SER 786 n 67 SER 786 A ALA 787 n 68 ALA 787 A VAL 788 n 69 VAL 788 A SER 789 n 70 SER 789 A ASP 790 n 71 ASP 790 A GLN 791 n 72 GLN 791 A THR 792 n 73 THR 792 A LYS 793 n 74 LYS 793 A VAL 794 n 75 VAL 794 A SER 795 n 76 SER 795 A GLU 796 n 77 GLU 796 A GLU 797 n 78 GLU 797 A HIS 798 n 79 HIS 798 A LEU 799 n 80 LEU 799 A TRP 800 n 81 TRP 800 A GLU 801 n 82 GLU 801 A SER 802 n 83 SER 802 A LEU 803 n 84 LEU 803 A GLN 804 n 85 GLN 804 A THR 805 n 86 THR 805 A ILE 806 n 87 ILE 806 A LEU 807 n 88 LEU 807 A PRO 808 n 89 PRO 808 A ASP 809 n 90 ASP 809 A SER 810 n 91 SER 810 A GLN 811 n 92 GLN 811 A LEU 812 n 93 LEU 812 A SER 813 n 94 SER 813 A ASN 814 n 95 ASN 814 A GLU 815 n 96 GLU 815 A GLU 816 n 97 GLU 816 A THR 817 n 98 THR 817 A ASN 818 n 99 ASN 818 A THR 819 n 100 THR 819 A LEU 820 n 101 LEU 820 A GLY 821 n 102 GLY 821 A LEU 822 n 103 LEU 822 A SER 823 n 104 SER 823 A THR 824 n 105 THR 824 A GLU 825 n 106 GLU 825 A HIS 826 n 107 HIS 826 A LEU 827 n 108 LEU 827 A THR 828 n 109 THR 828 A ALA 829 n 110 ALA 829 A LEU 830 n 111 LEU 830 A ALA 831 n 112 ALA 831 A HIS 832 n 113 HIS 832 A LEU 833 n 114 LEU 833 A TYR 834 n 115 TYR 834 A ASN 835 n 116 ASN 835 A PHE 836 n 117 PHE 836 A GLN 837 n 118 GLN 837 A ALA 838 n 119 ALA 838 A THR 839 n 120 THR 839 A VAL 840 n 121 VAL 840 A TYR 841 n 122 TYR 841 A SER 842 n 123 SER 842 A ASP 843 n 124 ASP 843 A ARG 844 n 125 ARG 844 A GLY 845 n 126 GLY 845 A PRO 846 n 127 PRO 846 A ILE 847 n 128 ILE 847 A LEU 848 n 129 LEU 848 A PHE 849 n 130 PHE 849 A GLY 850 n 131 GLY 850 A PRO 851 n 132 PRO 851 A SER 852 n 133 SER 852 A ASP 853 n 134 ASP 853 A THR 854 n 135 THR 854 A ILE 855 n 136 ILE 855 A LYS 856 n 137 LYS 856 A ARG 857 n 138 ARG 857 A ILE 858 n 139 ILE 858 A ASP 859 n 140 ASP 859 A ILE 860 n 141 ILE 860 A THR 861 n 142 THR 861 A HIS 862 n 143 HIS 862 A THR 863 n 144 THR 863 A THR 864 n 145 THR 864 A GLY 865 n 146 GLY 865 A PRO 866 n 147 PRO 866 A PRO 867 n 148 PRO 867 A SER 868 n 149 SER 868 A HIS 869 n 150 HIS 869 A PHE 870 n 151 PHE 870 A SER 871 n 152 SER 871 A PRO 872 n 153 PRO 872 A GLY 873 n 154 GLY 873 A LYS 874 n 155 LYS 874 A ARG 875 n 156 ARG 875 A LEU 876 n 157 LEU 876 A n 158 877 A n 159 878 A n 160 879 A n 1 -9 B n 2 -8 B n 3 -7 B n 4 -6 B n 5 -5 B n 6 -4 B n 7 -3 B n 8 -2 B n 9 -1 B n 10 0 B MET 1 n 11 MET 1 B GLN 2 n 12 GLN 2 B ILE 3 n 13 ILE 3 B PHE 4 n 14 PHE 4 B VAL 5 n 15 VAL 5 B LYS 6 n 16 LYS 6 B THR 7 n 17 THR 7 B LEU 8 n 18 LEU 8 B THR 9 n 19 THR 9 B GLY 10 n 20 GLY 10 B LYS 11 n 21 LYS 11 B THR 12 n 22 THR 12 B ILE 13 n 23 ILE 13 B THR 14 n 24 THR 14 B LEU 15 n 25 LEU 15 B GLU 16 n 26 GLU 16 B VAL 17 n 27 VAL 17 B GLU 18 n 28 GLU 18 B PRO 19 n 29 PRO 19 B SER 20 n 30 SER 20 B ASP 21 n 31 ASP 21 B THR 22 n 32 THR 22 B ILE 23 n 33 ILE 23 B GLU 24 n 34 GLU 24 B ASN 25 n 35 ASN 25 B VAL 26 n 36 VAL 26 B LYS 27 n 37 LYS 27 B ALA 28 n 38 ALA 28 B LYS 29 n 39 LYS 29 B ILE 30 n 40 ILE 30 B GLN 31 n 41 GLN 31 B ASP 32 n 42 ASP 32 B LYS 33 n 43 LYS 33 B GLU 34 n 44 GLU 34 B GLY 35 n 45 GLY 35 B ILE 36 n 46 ILE 36 B PRO 37 n 47 PRO 37 B PRO 38 n 48 PRO 38 B ASP 39 n 49 ASP 39 B GLN 40 n 50 GLN 40 B GLN 41 n 51 GLN 41 B ARG 42 n 52 ARG 42 B LEU 43 n 53 LEU 43 B ILE 44 n 54 ILE 44 B PHE 45 n 55 PHE 45 B ALA 46 n 56 ALA 46 B GLY 47 n 57 GLY 47 B LYS 48 n 58 LYS 48 B GLN 49 n 59 GLN 49 B LEU 50 n 60 LEU 50 B GLU 51 n 61 GLU 51 B ASP 52 n 62 ASP 52 B GLY 53 n 63 GLY 53 B ARG 54 n 64 ARG 54 B THR 55 n 65 THR 55 B LEU 56 n 66 LEU 56 B SER 57 n 67 SER 57 B ASP 58 n 68 ASP 58 B TYR 59 n 69 TYR 59 B ASN 60 n 70 ASN 60 B ILE 61 n 71 ILE 61 B GLN 62 n 72 GLN 62 B LYS 63 n 73 LYS 63 B GLU 64 n 74 GLU 64 B SER 65 n 75 SER 65 B THR 66 n 76 THR 66 B LEU 67 n 77 LEU 67 B HIS 68 n 78 HIS 68 B LEU 69 n 79 LEU 69 B VAL 70 n 80 VAL 70 B LEU 71 n 81 LEU 71 B ARG 72 n 82 ARG 72 B LEU 73 n 83 LEU 73 B ARG 74 n 84 ARG 74 B GLY 75 n 85 GLY 75 B n 1 720 C n 2 721 C n 3 722 C n 4 723 C n 5 724 C n 6 725 C n 7 726 C n 8 727 C n 9 728 C n 10 729 C n 11 730 C n 12 731 C LEU 732 n 13 LEU 732 C PRO 733 n 14 PRO 733 C ALA 734 n 15 ALA 734 C PRO 735 n 16 PRO 735 C LEU 736 n 17 LEU 736 C THR 737 n 18 THR 737 C ASN 738 n 19 ASN 738 C ASP 739 n 20 ASP 739 C PRO 740 n 21 PRO 740 C THR 741 n 22 THR 741 C ALA 742 n 23 ALA 742 C ILE 743 n 24 ILE 743 C GLY 744 n 25 GLY 744 C PRO 745 n 26 PRO 745 C VAL 746 n 27 VAL 746 C LEU 747 n 28 LEU 747 C PRO 748 n 29 PRO 748 C PHE 749 n 30 PHE 749 C GLU 750 n 31 GLU 750 C GLU 751 n 32 GLU 751 C LEU 752 n 33 LEU 752 C HIS 753 n 34 HIS 753 C PRO 754 n 35 PRO 754 C ARG 755 n 36 ARG 755 C ARG 756 n 37 ARG 756 C TYR 757 n 38 TYR 757 C PRO 758 n 39 PRO 758 C GLU 759 n 40 GLU 759 C ASN 760 n 41 ASN 760 C THR 761 n 42 THR 761 C ALA 762 n 43 ALA 762 C THR 763 n 44 THR 763 C PHE 764 n 45 PHE 764 C LEU 765 n 46 LEU 765 C THR 766 n 47 THR 766 C ARG 767 n 48 ARG 767 C LEU 768 n 49 LEU 768 C ARG 769 n 50 ARG 769 C SER 770 n 51 SER 770 C LEU 771 n 52 LEU 771 C PRO 772 n 53 PRO 772 C SER 773 n 54 SER 773 C ASN 774 n 55 ASN 774 C HIS 775 n 56 HIS 775 C LEU 776 n 57 LEU 776 C PRO 777 n 58 PRO 777 C GLN 778 n 59 GLN 778 C PRO 779 n 60 PRO 779 C THR 780 n 61 THR 780 C LEU 781 n 62 LEU 781 C ASN 782 n 63 ASN 782 C CYS 783 n 64 CYS 783 C LEU 784 n 65 LEU 784 C LEU 785 n 66 LEU 785 C SER 786 n 67 SER 786 C ALA 787 n 68 ALA 787 C VAL 788 n 69 VAL 788 C SER 789 n 70 SER 789 C ASP 790 n 71 ASP 790 C GLN 791 n 72 GLN 791 C THR 792 n 73 THR 792 C LYS 793 n 74 LYS 793 C VAL 794 n 75 VAL 794 C SER 795 n 76 SER 795 C GLU 796 n 77 GLU 796 C GLU 797 n 78 GLU 797 C HIS 798 n 79 HIS 798 C LEU 799 n 80 LEU 799 C TRP 800 n 81 TRP 800 C GLU 801 n 82 GLU 801 C SER 802 n 83 SER 802 C LEU 803 n 84 LEU 803 C GLN 804 n 85 GLN 804 C THR 805 n 86 THR 805 C ILE 806 n 87 ILE 806 C LEU 807 n 88 LEU 807 C PRO 808 n 89 PRO 808 C ASP 809 n 90 ASP 809 C SER 810 n 91 SER 810 C GLN 811 n 92 GLN 811 C LEU 812 n 93 LEU 812 C SER 813 n 94 SER 813 C ASN 814 n 95 ASN 814 C GLU 815 n 96 GLU 815 C GLU 816 n 97 GLU 816 C THR 817 n 98 THR 817 C ASN 818 n 99 ASN 818 C THR 819 n 100 THR 819 C LEU 820 n 101 LEU 820 C GLY 821 n 102 GLY 821 C LEU 822 n 103 LEU 822 C SER 823 n 104 SER 823 C THR 824 n 105 THR 824 C GLU 825 n 106 GLU 825 C HIS 826 n 107 HIS 826 C LEU 827 n 108 LEU 827 C THR 828 n 109 THR 828 C ALA 829 n 110 ALA 829 C LEU 830 n 111 LEU 830 C ALA 831 n 112 ALA 831 C HIS 832 n 113 HIS 832 C LEU 833 n 114 LEU 833 C TYR 834 n 115 TYR 834 C ASN 835 n 116 ASN 835 C PHE 836 n 117 PHE 836 C GLN 837 n 118 GLN 837 C ALA 838 n 119 ALA 838 C THR 839 n 120 THR 839 C VAL 840 n 121 VAL 840 C TYR 841 n 122 TYR 841 C SER 842 n 123 SER 842 C ASP 843 n 124 ASP 843 C ARG 844 n 125 ARG 844 C GLY 845 n 126 GLY 845 C PRO 846 n 127 PRO 846 C ILE 847 n 128 ILE 847 C LEU 848 n 129 LEU 848 C PHE 849 n 130 PHE 849 C GLY 850 n 131 GLY 850 C PRO 851 n 132 PRO 851 C SER 852 n 133 SER 852 C ASP 853 n 134 ASP 853 C THR 854 n 135 THR 854 C ILE 855 n 136 ILE 855 C LYS 856 n 137 LYS 856 C ARG 857 n 138 ARG 857 C ILE 858 n 139 ILE 858 C ASP 859 n 140 ASP 859 C ILE 860 n 141 ILE 860 C THR 861 n 142 THR 861 C HIS 862 n 143 HIS 862 C THR 863 n 144 THR 863 C THR 864 n 145 THR 864 C GLY 865 n 146 GLY 865 C PRO 866 n 147 PRO 866 C PRO 867 n 148 PRO 867 C SER 868 n 149 SER 868 C HIS 869 n 150 HIS 869 C PHE 870 n 151 PHE 870 C SER 871 n 152 SER 871 C PRO 872 n 153 PRO 872 C GLY 873 n 154 GLY 873 C LYS 874 n 155 LYS 874 C ARG 875 n 156 ARG 875 C LEU 876 n 157 LEU 876 C n 158 877 C n 159 878 C n 160 879 C n 1 -9 D n 2 -8 D n 3 -7 D n 4 -6 D n 5 -5 D n 6 -4 D n 7 -3 D n 8 -2 D n 9 -1 D n 10 0 D MET 1 n 11 MET 1 D GLN 2 n 12 GLN 2 D ILE 3 n 13 ILE 3 D PHE 4 n 14 PHE 4 D VAL 5 n 15 VAL 5 D LYS 6 n 16 LYS 6 D THR 7 n 17 THR 7 D LEU 8 n 18 LEU 8 D THR 9 n 19 THR 9 D GLY 10 n 20 GLY 10 D LYS 11 n 21 LYS 11 D THR 12 n 22 THR 12 D ILE 13 n 23 ILE 13 D THR 14 n 24 THR 14 D LEU 15 n 25 LEU 15 D GLU 16 n 26 GLU 16 D VAL 17 n 27 VAL 17 D GLU 18 n 28 GLU 18 D PRO 19 n 29 PRO 19 D SER 20 n 30 SER 20 D ASP 21 n 31 ASP 21 D THR 22 n 32 THR 22 D ILE 23 n 33 ILE 23 D GLU 24 n 34 GLU 24 D ASN 25 n 35 ASN 25 D VAL 26 n 36 VAL 26 D LYS 27 n 37 LYS 27 D ALA 28 n 38 ALA 28 D LYS 29 n 39 LYS 29 D ILE 30 n 40 ILE 30 D GLN 31 n 41 GLN 31 D ASP 32 n 42 ASP 32 D LYS 33 n 43 LYS 33 D GLU 34 n 44 GLU 34 D GLY 35 n 45 GLY 35 D ILE 36 n 46 ILE 36 D PRO 37 n 47 PRO 37 D PRO 38 n 48 PRO 38 D ASP 39 n 49 ASP 39 D GLN 40 n 50 GLN 40 D GLN 41 n 51 GLN 41 D ARG 42 n 52 ARG 42 D LEU 43 n 53 LEU 43 D ILE 44 n 54 ILE 44 D PHE 45 n 55 PHE 45 D ALA 46 n 56 ALA 46 D GLY 47 n 57 GLY 47 D LYS 48 n 58 LYS 48 D GLN 49 n 59 GLN 49 D LEU 50 n 60 LEU 50 D GLU 51 n 61 GLU 51 D ASP 52 n 62 ASP 52 D GLY 53 n 63 GLY 53 D ARG 54 n 64 ARG 54 D THR 55 n 65 THR 55 D LEU 56 n 66 LEU 56 D SER 57 n 67 SER 57 D ASP 58 n 68 ASP 58 D TYR 59 n 69 TYR 59 D ASN 60 n 70 ASN 60 D ILE 61 n 71 ILE 61 D GLN 62 n 72 GLN 62 D LYS 63 n 73 LYS 63 D GLU 64 n 74 GLU 64 D SER 65 n 75 SER 65 D THR 66 n 76 THR 66 D LEU 67 n 77 LEU 67 D HIS 68 n 78 HIS 68 D LEU 69 n 79 LEU 69 D VAL 70 n 80 VAL 70 D LEU 71 n 81 LEU 71 D ARG 72 n 82 ARG 72 D LEU 73 n 83 LEU 73 D ARG 74 n 84 ARG 74 D GLY 75 n 85 GLY 75 D 0.2868 -0.1897 0.0971 3.6038 -0.3153 1.4036 0.0982 -0.0626 0.0806 -0.1355 -0.0112 0.3890 0.2886 -0.1235 0.0983 0.5027 -0.0499 -0.0102 0.1444 -0.1520 1.2075 refined -14.4923 -12.4697 -51.2925 X-RAY DIFFRACTION 0.9829 1.3308 0.1495 6.0524 -1.1212 4.7599 -0.3583 -0.2944 0.8940 0.2330 0.2383 -0.8328 -0.7307 0.1957 0.0276 0.5845 0.0202 -0.1506 0.4532 -0.1853 1.3893 refined -28.8612 2.7203 -42.2872 X-RAY DIFFRACTION 2.3708 -0.1764 -0.6195 4.9630 1.3407 2.8508 -1.1098 -2.9864 -0.4046 0.9695 0.8691 0.0035 1.0157 0.5621 -0.0761 1.7778 0.6643 0.1845 3.3898 0.1093 1.5761 refined -13.8800 -18.9602 -11.3285 X-RAY DIFFRACTION 1.3185 0.0916 0.2814 5.9519 0.9595 2.6055 -0.1232 -0.7193 -0.2152 0.1908 0.4533 -0.9007 -1.9736 0.9592 0.2120 2.2304 -0.3617 0.1079 3.6073 -0.7359 2.3287 refined 0.0935 -1.3182 -16.1132 X-RAY DIFFRACTION A 0 A 0 X-RAY DIFFRACTION 1 (chain 'A' ) B 0 B 0 X-RAY DIFFRACTION 2 (chain 'B' ) C 0 C 0 X-RAY DIFFRACTION 3 (chain 'C' ) D 0 D 0 X-RAY DIFFRACTION 4 (chain 'D' ) author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric Covalent complex gel filtration 2180 -9 10760 2120 -9 10800 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 743 A N ILE 24 A O LEU 768 A O LEU 49 A O ILE 847 A O ILE 128 A N VAL 840 A N VAL 121 A N TYR 841 A N TYR 122 A O ILE 860 A O ILE 141 A N THR 861 A N THR 142 A O SER 871 A O SER 152 B O ILE 13 B O ILE 23 B N VAL 5 B N VAL 15 B N LYS 6 B N LYS 16 B O LEU 69 B O LEU 79 B O HIS 68 B O HIS 78 B N ILE 44 B N ILE 54 B N PHE 45 B N PHE 55 B O LYS 48 B O LYS 58 C N ILE 743 C N ILE 24 C O LEU 768 C O LEU 49 C O ILE 847 C O ILE 128 C N VAL 840 C N VAL 121 C N TYR 841 C N TYR 122 C O ILE 860 C O ILE 141 C N THR 861 C N THR 142 C O SER 871 C O SER 152 D O ILE 13 D O ILE 23 D N VAL 5 D N VAL 15 D N LYS 6 D N LYS 16 D O LEU 69 D O LEU 79 D O HIS 68 D O HIS 78 D N ILE 44 D N ILE 54 D N PHE 45 D N PHE 55 D O LYS 48 D O LYS 58 1 A MET 720 A MET 1 1 Y 1 A HIS 721 A HIS 2 1 Y 1 A HIS 722 A HIS 3 1 Y 1 A HIS 723 A HIS 4 1 Y 1 A HIS 724 A HIS 5 1 Y 1 A HIS 725 A HIS 6 1 Y 1 A HIS 726 A HIS 7 1 Y 1 A GLY 727 A GLY 8 1 Y 1 A SER 728 A SER 9 1 Y 1 A SER 729 A SER 10 1 Y 1 A GLN 730 A GLN 11 1 Y 1 A LEU 731 A LEU 12 1 Y 1 A LEU 877 A LEU 158 1 Y 1 A GLY 878 A GLY 159 1 Y 1 A SER 879 A SER 160 1 Y 1 B MET -9 B MET 1 1 Y 1 B TYR -8 B TYR 2 1 Y 1 B PRO -7 B PRO 3 1 Y 1 B TYR -6 B TYR 4 1 Y 1 B ASP -5 B ASP 5 1 Y 1 B VAL -4 B VAL 6 1 Y 1 B PRO -3 B PRO 7 1 Y 1 B ASP -2 B ASP 8 1 Y 1 B TYR -1 B TYR 9 1 Y 1 B ALA 0 B ALA 10 1 Y 1 C MET 720 C MET 1 1 Y 1 C HIS 721 C HIS 2 1 Y 1 C HIS 722 C HIS 3 1 Y 1 C HIS 723 C HIS 4 1 Y 1 C HIS 724 C HIS 5 1 Y 1 C HIS 725 C HIS 6 1 Y 1 C HIS 726 C HIS 7 1 Y 1 C GLY 727 C GLY 8 1 Y 1 C SER 728 C SER 9 1 Y 1 C SER 729 C SER 10 1 Y 1 C GLN 730 C GLN 11 1 Y 1 C LEU 731 C LEU 12 1 Y 1 C LEU 877 C LEU 158 1 Y 1 C GLY 878 C GLY 159 1 Y 1 C SER 879 C SER 160 1 Y 1 D MET -9 D MET 1 1 Y 1 D TYR -8 D TYR 2 1 Y 1 D PRO -7 D PRO 3 1 Y 1 D TYR -6 D TYR 4 1 Y 1 D ASP -5 D ASP 5 1 Y 1 D VAL -4 D VAL 6 1 Y 1 D PRO -3 D PRO 7 1 Y 1 D ASP -2 D ASP 8 1 Y 1 D TYR -1 D TYR 9 1 Y 1 D ALA 0 D ALA 10 1 Y 1 A ARG 756 -102.22 58.22 1 A THR 766 -160.74 -164.33 1 A SER 770 -102.79 -65.03 1 A PRO 772 -68.38 -179.41 1 A ASN 835 59.59 76.52 1 A ILE 855 -131.49 -47.03 1 A PRO 867 -97.04 -155.32 1 B GLU 34 -103.59 -63.11 1 B ALA 46 60.54 61.44 1 B ARG 72 -104.38 74.07 1 B ARG 74 -86.12 -158.28 1 C ARG 756 -101.00 57.64 1 C THR 766 -160.80 -164.30 1 C SER 770 -102.69 -64.87 1 C PRO 772 -68.48 -179.25 1 C ASN 835 59.66 76.33 1 C ILE 855 -131.69 -47.21 1 C PRO 867 -96.92 -155.56 1 D GLU 34 -103.57 -63.32 1 D ALA 46 60.22 61.69 1 D ARG 72 -104.53 74.10 1 D ARG 74 -86.31 -158.15 435.150 175.6872 46.980 0.2827 0.2057 0.2094 3.6630 37.4600 265 5291 5.0100 96.7800 0.5800 1 THROUGHOUT 1.350 MOLECULAR REPLACEMENT 18.5400 0.9000 1.1100 5LW5 3.6630 37.4600 0 3480 190.88 16 0 3464 440 0.003 3558 0.495 4852 0.038 570 0.004 632 12.852 2192 1 A 1 1414 X-RAY DIFFRACTION 0.243 TORSIONAL 2 C 1 1414 X-RAY DIFFRACTION 0.243 TORSIONAL 1 B 2 766 X-RAY DIFFRACTION 0.243 TORSIONAL 2 D 2 766 X-RAY DIFFRACTION 0.243 TORSIONAL 0.3211 0.0000 0.2394 4.6136 128 2415 94.0000 0.2638 0.0000 0.1889 37.46 137 2611 99.0000 106.530 3.66 37.460 6YPT 5303 0.985 0.215 1 4.14 3.3 97 3.663 3.81 715 0.415 1 3.3 83.4 data reduction Wolfgang Kabsch Wolfgang.Kabsch@mpimf-heidelberg.mpg.de http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ XDS package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.12_2829 data extraction PDB deposit@deposit.rcsb.org Apr. 1, 2019 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.25 N X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin 1 N N 2 N N 1 N N 2 N N 3 N N 3 N N A ALA 734 A ALA 15 HELX_P A ASN 738 A ASN 19 5 AA1 5 A PHE 749 A PHE 30 HELX_P A HIS 753 A HIS 34 1 AA2 5 A ASN 782 A ASN 63 HELX_P A LYS 793 A LYS 74 1 AA3 12 A SER 795 A SER 76 HELX_P A LEU 807 A LEU 88 1 AA4 13 A PRO 808 A PRO 89 HELX_P A LEU 812 A LEU 93 5 AA5 5 A ASN 814 A ASN 95 HELX_P A LEU 820 A LEU 101 1 AA6 7 A SER 823 A SER 104 HELX_P A ASN 835 A ASN 116 1 AA7 13 B THR 22 B THR 32 HELX_P B GLU 34 B GLU 44 1 AA8 13 B PRO 37 B PRO 47 HELX_P B ASP 39 B ASP 49 5 AA9 3 B LEU 56 B LEU 66 HELX_P B ASN 60 B ASN 70 5 AB1 5 C PHE 749 C PHE 30 HELX_P C HIS 753 C HIS 34 1 AB2 5 C ASN 782 C ASN 63 HELX_P C LYS 793 C LYS 74 1 AB3 12 C SER 795 C SER 76 HELX_P C LEU 807 C LEU 88 1 AB4 13 C PRO 808 C PRO 89 HELX_P C LEU 812 C LEU 93 5 AB5 5 C ASN 814 C ASN 95 HELX_P C LEU 820 C LEU 101 1 AB6 7 C SER 823 C SER 104 HELX_P C ASN 835 C ASN 116 1 AB7 13 D THR 22 D THR 32 HELX_P D GLU 34 D GLU 44 1 AB8 13 D PRO 37 D PRO 47 HELX_P D ASP 39 D ASP 49 5 AB9 3 D LEU 56 D LEU 66 HELX_P D ASN 60 D ASN 70 5 AC1 5 covale 1.688 one A CYS 783 A SG CYS 64 1_555 A GVE 901 E CB GVE 1_555 covale 1.329 both A GVE 901 E N GVE 1_555 B GLY 75 B C GLY 85 1_555 covale 1.676 one C CYS 783 C SG CYS 64 1_555 C GVE 901 F CB GVE 1_555 covale 1.329 both C GVE 901 F N GVE 1_555 D GLY 75 D C GLY 85 1_555 VIRAL PROTEIN PRO/DUB, Deubiquitinase, TYMV, Ubiquitin, VIRAL PROTEIN A GLY 865 A GLY 146 1 A PRO 866 A PRO 147 7.31 A PRO 866 A PRO 147 1 A PRO 867 A PRO 148 -8.88 C GLY 865 C GLY 146 1 C PRO 866 C PRO 147 6.67 C PRO 866 C PRO 147 1 C PRO 867 C PRO 148 -7.76 chain A chain C chain B chain D A LEU 732 A LEU 13 A LEU 876 A LEU 157 chain A C LEU 732 C LEU 13 C LEU 876 C LEU 157 chain C B MET 1 B MET 11 B GLY 75 B GLY 85 chain B D MET 1 D MET 11 D GLY 75 D GLY 85 chain D POLR_TYMV UNP 1 728 P10358 SSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTIL PDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS UBC_HUMAN UNP 2 77 P0CG48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 728 879 6YPT 728 879 P10358 A 1 9 160 77 151 6YPT 1 75 P0CG48 B 2 11 85 728 879 6YPT 728 879 P10358 C 1 9 160 77 151 6YPT 1 75 P0CG48 D 2 11 85 1 initiating methionine MET 720 6YPT A P10358 UNP 1 1 expression tag HIS 721 6YPT A P10358 UNP 2 1 expression tag HIS 722 6YPT A P10358 UNP 3 1 expression tag HIS 723 6YPT A P10358 UNP 4 1 expression tag HIS 724 6YPT A P10358 UNP 5 1 expression tag HIS 725 6YPT A P10358 UNP 6 1 expression tag HIS 726 6YPT A P10358 UNP 7 1 expression tag GLY 727 6YPT A P10358 UNP 8 2 initiating methionine MET -9 6YPT B P0CG48 UNP 1 2 expression tag TYR -8 6YPT B P0CG48 UNP 2 2 expression tag PRO -7 6YPT B P0CG48 UNP 3 2 expression tag TYR -6 6YPT B P0CG48 UNP 4 2 expression tag ASP -5 6YPT B P0CG48 UNP 5 2 expression tag VAL -4 6YPT B P0CG48 UNP 6 2 expression tag PRO -3 6YPT B P0CG48 UNP 7 2 expression tag ASP -2 6YPT B P0CG48 UNP 8 2 expression tag TYR -1 6YPT B P0CG48 UNP 9 2 expression tag ALA 0 6YPT B P0CG48 UNP 10 3 initiating methionine MET 720 6YPT C P10358 UNP 1 3 expression tag HIS 721 6YPT C P10358 UNP 2 3 expression tag HIS 722 6YPT C P10358 UNP 3 3 expression tag HIS 723 6YPT C P10358 UNP 4 3 expression tag HIS 724 6YPT C P10358 UNP 5 3 expression tag HIS 725 6YPT C P10358 UNP 6 3 expression tag HIS 726 6YPT C P10358 UNP 7 3 expression tag GLY 727 6YPT C P10358 UNP 8 4 initiating methionine MET -9 6YPT D P0CG48 UNP 1 4 expression tag TYR -8 6YPT D P0CG48 UNP 2 4 expression tag PRO -7 6YPT D P0CG48 UNP 3 4 expression tag TYR -6 6YPT D P0CG48 UNP 4 4 expression tag ASP -5 6YPT D P0CG48 UNP 5 4 expression tag VAL -4 6YPT D P0CG48 UNP 6 4 expression tag PRO -3 6YPT D P0CG48 UNP 7 4 expression tag ASP -2 6YPT D P0CG48 UNP 8 4 expression tag TYR -1 6YPT D P0CG48 UNP 9 4 expression tag ALA 0 6YPT D P0CG48 UNP 10 2 4 5 2 4 5 anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ALA 742 A ALA 23 A PRO 748 A PRO 29 A LEU 765 A LEU 46 A ARG 769 A ARG 50 A GLY 845 A GLY 126 A PHE 849 A PHE 130 A ALA 838 A ALA 119 A SER 842 A SER 123 A ASP 859 A ASP 140 A THR 863 A THR 144 A HIS 869 A HIS 150 A PRO 872 A PRO 153 B THR 12 B THR 22 B GLU 16 B GLU 26 B GLN 2 B GLN 12 B LYS 6 B LYS 16 B THR 66 B THR 76 B LEU 71 B LEU 81 B GLN 41 B GLN 51 B PHE 45 B PHE 55 B LYS 48 B LYS 58 B GLN 49 B GLN 59 C ALA 742 C ALA 23 C PRO 748 C PRO 29 C LEU 765 C LEU 46 C ARG 769 C ARG 50 C GLY 845 C GLY 126 C PHE 849 C PHE 130 C ALA 838 C ALA 119 C SER 842 C SER 123 C ASP 859 C ASP 140 C THR 863 C THR 144 C HIS 869 C HIS 150 C PRO 872 C PRO 153 D THR 12 D THR 22 D GLU 16 D GLU 26 D GLN 2 D GLN 12 D LYS 6 D LYS 16 D THR 66 D THR 76 D LEU 71 D LEU 81 D GLN 41 D GLN 51 D PHE 45 D PHE 55 D LYS 48 D LYS 58 D GLN 49 D GLN 59 binding site for residue GVE A 901 A GVE 901 Software 6 binding site for Di-peptide GVE C 901 and GLY D 75 C GVE 901 Software 9 binding site for Di-peptide GVE C 901 and CYS C 783 C GVE 901 Software 11 A LEU 781 A LEU 62 6 1_555 A CYS 783 A CYS 64 6 1_555 A LEU 820 A LEU 101 6 1_555 A SER 868 A SER 149 6 1_555 A HIS 869 A HIS 150 6 1_555 B GLY 75 B GLY 85 6 1_555 C LEU 781 C LEU 62 9 1_555 C CYS 783 C CYS 64 9 1_555 C LEU 820 C LEU 101 9 1_555 C GLY 821 C GLY 102 9 1_555 C LEU 822 C LEU 103 9 1_555 C SER 868 C SER 149 9 1_555 C HIS 869 C HIS 150 9 1_555 C PHE 870 C PHE 151 9 1_555 D ARG 74 D ARG 84 9 1_555 C LEU 781 C LEU 62 11 1_555 C ASN 782 C ASN 63 11 1_555 C LEU 784 C LEU 65 11 1_555 C LEU 785 C LEU 66 11 1_555 C SER 786 C SER 67 11 1_555 C ALA 787 C ALA 68 11 1_555 C LEU 820 C LEU 101 11 1_555 C SER 868 C SER 149 11 1_555 C HIS 869 C HIS 150 11 1_555 C PHE 870 C PHE 151 11 1_555 D GLY 75 D GLY 85 11 1_555 4 P 1 21 1