0.038815 0.000000 0.000000 0.000000 0.024118 0.000000 0.000000 0.000000 0.018319 0.00000 0.00000 0.00000 Cabrejos, D.A.L. 0000-0003-2035-6584 Cavini, I. 0000-0002-0287-3054 Sala, F.A. 0000-0002-6251-7342 Valadares, N.F. 0000-0002-8652-6729 Pereira, H.M. 0000-0003-3414-5171 Brandao-Neto, J. 0000-0003-4692-5263 Nascimento, A.F.Z. 0000-0003-2504-1696 Uson, I. 0000-0001-5455-084X Araujo, A.P.U. 0000-0002-2016-3179 Garratt, R.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 25.763 41.463 54.588 C2 H4 O 44.053 ACETYL GROUP non-polymer C2 H3 O2 -1 59.044 ACETATE ION non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N C N 9 N O N 10 N O N 11 N C N 12 N H N 13 N H N 14 N H N 15 N N N 16 S C N 17 N C N 18 N O N 19 N C N 20 N C N 21 N C N 22 N N N 23 N C N 24 N N N 25 N N N 26 N O N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N N N 43 S C N 44 N C N 45 N O N 46 N C N 47 N C N 48 N O N 49 N N N 50 N O N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N N N 60 S C N 61 N C N 62 N O N 63 N C N 64 N C N 65 N O N 66 N O N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 S C N 116 N C N 117 N O N 118 N C Y 119 N C Y 120 N N Y 121 N C Y 122 N C Y 123 N N N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N O N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 S C N 143 N C N 144 N C N 145 N C N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N C N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 N C N 187 N C N 188 N C N 189 N C N 190 N N N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N S N 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 N H N 229 N H N 230 N S N 231 N O N 232 N O N 233 N O N 234 N O N 235 N N N 236 S C N 237 N C N 238 N O N 239 R C N 240 N O N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing Y 118 N sing Y 119 N doub Y 120 N doub N 121 N sing Y 122 N sing N 123 N sing Y 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing UK J.Mol.Biol. JMOBAK 0070 1089-8638 433 166889 166889 10.1016/j.jmb.2021.166889 33639214 Orientational Ambiguity in Septin Coiled Coils and its Structural Basis. 2021 10.2210/pdb6wb3/pdb pdb_00006wb3 100 1 N PIXEL 2016-02-02 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 XALOC ALBA 0.9795 SYNCHROTRON ALBA BEAMLINE XALOC 3875.542 Septin-4 Coiled coil region 2 syn polymer 96.063 SULFATE ION 2 syn non-polymer 59.044 ACETATE ION 2 syn non-polymer 18.015 water 44 nat water Apoptosis-related protein in the TGF-beta signaling pathway,ARTS,Bradeion beta,Brain protein H5,CE5B3 beta,Cell division control-related protein 2,hCDCREL-2,Cerebral protein 7,Peanut-like protein 2 no yes (ACE)ETEKLIREKDEELRRMQEMLHKIQKQMKEN(NH2) XETEKLIREKDEELRRMQEMLHKIQKQMKENX A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.89 35.01 VAPOR DIFFUSION 4.6 0.1 M sodium acetate pH 4.6, 0.2 M NH4SO4, 16% w/v PEG 4000 291 citation citation_author chem_comp_atom chem_comp_bond database_2 pdbx_entry_details pdbx_modification_feature repository Initial release Database references Data collection Database references Structure summary 1 0 2021-03-17 1 1 2021-03-24 1 2 2024-11-13 _citation.journal_volume _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_entry_details.has_protein_modification Brazil Sao Paulo Research Foundation (FAPESP) 2016/04658-9 Brazil Sao Paulo Research Foundation (FAPESP) 2018/19992-7 Brazil Sao Paulo Research Foundation (FAPESP) 2015/00062-1 Brazil Sao Paulo Research Foundation (FAPESP) 2014/15546-1 N RCSB Y RCSB 2020-03-26 REL REL ACE ACE SUBJECT OF INVESTIGATION ACT ACT SUBJECT OF INVESTIGATION NH2 NH2 SUBJECT OF INVESTIGATION SO4 SO4 SUBJECT OF INVESTIGATION SO4 SULFATE ION ACT ACETATE ION HOH water 9606 Human Homo sapiens sample 1 32 Y Y A ACE 447 Terminal acetylation A ACE 1 A GLU 448 GLU A GLU 2 1_555 ACE 10 1_555 None B ACE 447 Terminal acetylation B ACE 1 B GLU 448 GLU B GLU 2 1_555 ACE 10 1_555 None A NH2 478 Terminal amidation A NH2 32 A ASN 477 ASN A ASN 31 1_555 NH2 17 1_555 None SO4 2 2 SO4 SO4 501 A ACT 2 3 ACT ACT 502 A SO4 1 2 SO4 SO4 501 B ACT 1 3 ACT ACT 502 B HOH 4 4 HOH HOH 601 A HOH 36 4 HOH HOH 602 A HOH 32 4 HOH HOH 603 A HOH 30 4 HOH HOH 604 A HOH 15 4 HOH HOH 605 A HOH 20 4 HOH HOH 606 A HOH 25 4 HOH HOH 607 A HOH 9 4 HOH HOH 608 A HOH 17 4 HOH HOH 609 A HOH 13 4 HOH HOH 610 A HOH 8 4 HOH HOH 611 A HOH 42 4 HOH HOH 612 A HOH 43 4 HOH HOH 613 A HOH 37 4 HOH HOH 614 A HOH 24 4 HOH HOH 615 A HOH 18 4 HOH HOH 616 A HOH 44 4 HOH HOH 617 A HOH 12 4 HOH HOH 618 A HOH 26 4 HOH HOH 619 A HOH 38 4 HOH HOH 620 A HOH 33 4 HOH HOH 621 A HOH 34 4 HOH HOH 622 A HOH 3 4 HOH HOH 623 A HOH 5 4 HOH HOH 601 B HOH 7 4 HOH HOH 602 B HOH 35 4 HOH HOH 603 B HOH 1 4 HOH HOH 604 B HOH 6 4 HOH HOH 605 B HOH 16 4 HOH HOH 606 B HOH 31 4 HOH HOH 607 B HOH 41 4 HOH HOH 608 B HOH 21 4 HOH HOH 609 B HOH 11 4 HOH HOH 610 B HOH 14 4 HOH HOH 611 B HOH 29 4 HOH HOH 612 B HOH 22 4 HOH HOH 613 B HOH 27 4 HOH HOH 614 B HOH 2 4 HOH HOH 615 B HOH 23 4 HOH HOH 616 B HOH 39 4 HOH HOH 617 B HOH 40 4 HOH HOH 618 B HOH 28 4 HOH HOH 619 B HOH 10 4 HOH HOH 620 B HOH 19 4 HOH HOH 621 B ACE 447 n 1 ACE 447 A GLU 448 n 2 GLU 448 A THR 449 n 3 THR 449 A GLU 450 n 4 GLU 450 A LYS 451 n 5 LYS 451 A LEU 452 n 6 LEU 452 A ILE 453 n 7 ILE 453 A ARG 454 n 8 ARG 454 A GLU 455 n 9 GLU 455 A LYS 456 n 10 LYS 456 A ASP 457 n 11 ASP 457 A GLU 458 n 12 GLU 458 A GLU 459 n 13 GLU 459 A LEU 460 n 14 LEU 460 A ARG 461 n 15 ARG 461 A ARG 462 n 16 ARG 462 A MET 463 n 17 MET 463 A GLN 464 n 18 GLN 464 A GLU 465 n 19 GLU 465 A MET 466 n 20 MET 466 A LEU 467 n 21 LEU 467 A HIS 468 n 22 HIS 468 A LYS 469 n 23 LYS 469 A ILE 470 n 24 ILE 470 A GLN 471 n 25 GLN 471 A LYS 472 n 26 LYS 472 A GLN 473 n 27 GLN 473 A MET 474 n 28 MET 474 A LYS 475 n 29 LYS 475 A GLU 476 n 30 GLU 476 A ASN 477 n 31 ASN 477 A NH2 478 n 32 NH2 478 A ACE 447 n 1 ACE 447 B GLU 448 n 2 GLU 448 B THR 449 n 3 THR 449 B GLU 450 n 4 GLU 450 B LYS 451 n 5 LYS 451 B LEU 452 n 6 LEU 452 B ILE 453 n 7 ILE 453 B ARG 454 n 8 ARG 454 B GLU 455 n 9 GLU 455 B LYS 456 n 10 LYS 456 B ASP 457 n 11 ASP 457 B GLU 458 n 12 GLU 458 B GLU 459 n 13 GLU 459 B LEU 460 n 14 LEU 460 B ARG 461 n 15 ARG 461 B ARG 462 n 16 ARG 462 B MET 463 n 17 MET 463 B GLN 464 n 18 GLN 464 B GLU 465 n 19 GLU 465 B MET 466 n 20 MET 466 B LEU 467 n 21 LEU 467 B HIS 468 n 22 HIS 468 B LYS 469 n 23 LYS 469 B ILE 470 n 24 ILE 470 B GLN 471 n 25 GLN 471 B LYS 472 n 26 LYS 472 B GLN 473 n 27 GLN 473 B MET 474 n 28 MET 474 B ALA 475 n 29 LYS 475 B GLU 476 n 30 GLU 476 B ASN 477 n 31 ASN 477 B n 32 478 B 5.1085 5.1708 1.9255 12.1319 4.1398 3.9049 0.4441 -0.3657 0.1612 0.4904 -0.4151 0.3672 0.1537 -0.1827 -0.0289 0.0563 -0.0331 0.0216 -0.0786 -0.0101 -0.0805 refined 14.6173 27.9125 4.1593 X-RAY DIFFRACTION 3.5833 5.0310 1.7310 11.1424 4.8147 4.2186 0.3707 -0.1347 -0.3120 0.4979 -0.1027 -0.4892 0.2107 0.1207 -0.2680 0.1181 0.0057 -0.0478 -0.0263 -0.0014 -0.0243 refined 25.4663 27.9339 4.2215 X-RAY DIFFRACTION A 447 A 478 X-RAY DIFFRACTION 1 { A|* } B 447 B 477 X-RAY DIFFRACTION 2 { B|* } author_and_software_defined_assembly PISA 2 dimeric SEC-MALS light scattering 2340 -36 5080 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG GLU 448 A CG GLU 2 1 Y 1 A CD GLU 448 A CD GLU 2 1 Y 1 A OE1 GLU 448 A OE1 GLU 2 1 Y 1 A OE2 GLU 448 A OE2 GLU 2 1 Y 1 A CG LYS 451 A CG LYS 5 1 Y 1 A CD LYS 451 A CD LYS 5 1 Y 1 A CE LYS 451 A CE LYS 5 1 Y 1 A NZ LYS 451 A NZ LYS 5 1 Y 1 A CG GLU 455 A CG GLU 9 1 Y 1 A CD GLU 455 A CD GLU 9 1 Y 1 A OE1 GLU 455 A OE1 GLU 9 1 Y 1 A OE2 GLU 455 A OE2 GLU 9 1 Y 1 B CG GLU 448 B CG GLU 2 1 Y 1 B CD GLU 448 B CD GLU 2 1 Y 1 B OE1 GLU 448 B OE1 GLU 2 1 Y 1 B OE2 GLU 448 B OE2 GLU 2 1 Y 1 B CG GLU 455 B CG GLU 9 1 Y 1 B CD GLU 455 B CD GLU 9 1 Y 1 B OE1 GLU 455 B OE1 GLU 9 1 Y 1 B OE2 GLU 455 B OE2 GLU 9 1 Y 1 B CG GLN 473 B CG GLN 27 1 Y 1 B CD GLN 473 B CD GLN 27 1 Y 1 B OE1 GLN 473 B OE1 GLN 27 1 Y 1 B NE2 GLN 473 B NE2 GLN 27 1 Y 1 B CG LYS 475 B CG LYS 29 1 Y 1 B CD LYS 475 B CD LYS 29 1 Y 1 B CE LYS 475 B CE LYS 29 1 Y 1 B NZ LYS 475 B NZ LYS 29 1 Y 1 B NH2 478 B NH2 32 1 Y 100.340 31.3000 16.870 -10.9664 0.0000 0.0000 7.4025 0.0000 3.5639 0.9360 0.9190 0.2467 0.2215 0.2227 1.3500 33.0200 658 13276 4.9600 99.0000 0.0690 RANDOM 1 THROUGHOUT 0.000 AB INITIO PHASING 0.0740 0.0730 0.0700 0.240 1.3500 33.0200 44 571 56.45 36.22 18 0 509 63 231 SINUSOIDAL 2.000 97 HARMONIC 5.000 542 HARMONIC 10.000 69 SEMIHARMONIC 5.000 606 SEMIHARMONIC 4.000 0.010 542 HARMONIC 2.000 0.870 717 HARMONIC 2.000 2.260 14.580 0.2707 0.0000 0.2458 0.2469 1.3600 17 398 415 33 4.1000 99.7700 18.230 1.350 33.020 6WB3 13442 0.999 0.071 0.022 0.074 1 16.200 162112 12.100 32 99.900 0.888 1.350 1.370 8065 654 0.948 0.261 0.926 1 2.600 12.300 100.000 0.067 7.390 33.020 1036 111 0.998 0.022 0.071 1 36.400 9.300 99.700 refinement BUSTER 2.10.3 (6-FEB-2020) data scaling Aimless 0.5.31 data extraction PDB_EXTRACT 3.25 data reduction XDS phasing Arcimboldo N Crystal structure of coiled coil region of human septin 4 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N A GLU 448 A GLU 2 HELX_P A ASN 477 A ASN 31 1 AA1 30 B GLU 448 B GLU 2 HELX_P B ASN 477 B ASN 31 1 AA2 30 covale 1.331 both A ACE 447 A C ACE 1 1_555 A GLU 448 A N GLU 2 1_555 covale 1.333 both A ASN 477 A C ASN 31 1_555 A NH2 478 A N NH2 32 1_555 covale 1.330 both B ACE 447 B C ACE 1 1_555 B GLU 448 B N GLU 2 1_555 STRUCTURAL PROTEIN Coiled coil, Septin, STRUCTURAL PROTEIN SEPT4_HUMAN UNP 1 448 O43236 ETEKLIREKDEELRRMQEMLHKIQKQMKEN 448 477 6WB3 448 477 O43236 A 1 2 31 448 477 6WB3 448 477 O43236 B 1 2 31 1 acetylation ACE 447 6WB3 A O43236 UNP 1 1 amidation NH2 478 6WB3 A O43236 UNP 32 2 acetylation ACE 447 6WB3 B O43236 UNP 1 2 amidation NH2 478 6WB3 B O43236 UNP 32 binding site for residue SO4 A 501 A SO4 501 Software 6 binding site for residue ACT A 502 A ACT 502 Software 4 binding site for residue SO4 B 501 B SO4 501 Software 4 binding site for residue ACT B 502 B ACT 502 Software 3 binding site for Ligand NH2 A 478 bound to ASN A 477 A NH2 478 Software 1 binding site for Di-peptide ACE B 447 and GLU B 448 B ACE 447 Software 6 A GLU 448 A GLU 2 6 1_555 A THR 449 A THR 3 6 1_555 A GLU 450 A GLU 4 6 1_555 A HOH 613 G HOH 6 1_555 B HIS 468 B HIS 22 6 3_755 B HOH 609 H HOH 6 3_755 A ARG 462 A ARG 16 4 1_555 A GLU 465 A GLU 19 4 1_555 B MET 463 B MET 17 4 4_465 B HOH 613 H HOH 4 1_455 A GLN 473 A GLN 27 4 1_655 A LYS 475 A LYS 29 4 4_555 B LYS 451 B LYS 5 4 1_555 B ARG 454 B ARG 8 4 1_555 A GLN 471 A GLN 25 3 1_555 B ASP 457 B ASP 11 3 1_555 B HOH 601 H HOH 3 1_555 A ASN 477 A ASN 31 1 1_555 B THR 449 B THR 3 6 1_555 B GLU 450 B GLU 4 6 1_555 B LYS 451 B LYS 5 6 1_555 B LEU 452 B LEU 6 6 1_555 B HOH 610 H HOH 6 1_555 B HOH 612 H HOH 6 1_555 19 P 21 21 21