0.014049 0.000000 0.005258 0.000000 0.015239 0.000000 0.000000 0.000000 0.011642 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 16.26893 3.65395 3.58509 77.28589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.50761 7.44341 1.04373 23.83732 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.38062 1.54875 3.38349 72.32734 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.51135 5.44231 1.42069 35.72801 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.55732 6.39887 1.23737 29.19336 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0000-0003-1449-4710 Freudenthal, B.D. 0000-0002-3915-1979 Whitaker, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 110.52 90.00 71.177 65.622 91.717 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O6 P S 323.263 n 2'-deoxy-5'-O-thiophosphonocytidine 2'-deoxy-5'-O-thiophosphonocytidine (thiophospho connection isoform 1) DNA linking C9 H14 N3 O6 P S 323.263 n 2'-deoxy-5'-O-thiophosphonocytidine 2'-deoxy-5'-O-thiophosphonocytidine (thiophospho connection isoform 2) DNA linking Ca 2 40.078 CALCIUM ION non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N P N 75 N C N 76 N O N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C N 83 N N N 84 N C N 85 N O N 86 N N N 87 N C N 88 N N N 89 N C N 90 N C N 91 N O N 92 N S N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N P N 109 N C N 110 N O N 111 R C N 112 N O N 113 S C N 114 N O N 115 N C N 116 R C N 117 N N N 118 N C N 119 N O N 120 N N N 121 N C N 122 N N N 123 N C N 124 N C N 125 N S N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N CA N 143 N CL N 144 N N N 145 R C N 146 N C N 147 N O N 148 N C N 149 N S N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C Y 174 N C N 175 N N Y 176 N N Y 177 N C Y 178 N N Y 179 N C N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N O N 195 N P N 196 N O N 197 N O N 198 N O N 199 N C N 200 R C N 201 N O N 202 S C N 203 N O N 204 N C N 205 R C N 206 N N N 207 N C N 208 N O N 209 N N N 210 N C N 211 N N N 212 N C N 213 N C N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N O N 229 N P N 230 N O N 231 N O N 232 N O N 233 N C N 234 R C N 235 N O N 236 S C N 237 N O N 238 N C N 239 R C Y 240 N N Y 241 N C Y 242 N N Y 243 N C N 244 N C N 245 N O N 246 N N N 247 N C N 248 N N N 249 N N Y 250 N C N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N O N 266 N P N 267 N O N 268 N O N 269 N O N 270 N C N 271 R C N 272 N O N 273 S C N 274 N O N 275 N C N 276 R C N 277 N N N 278 N C N 279 N O N 280 N N N 281 N C N 282 N O N 283 N C N 284 N C N 285 N C N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N C N 302 N O N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C N 316 N C N 317 N C N 318 N O N 319 N N N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N O N 339 N O N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 N C N 352 N C N 353 N O N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C Y 365 N C Y 366 N N Y 367 N C Y 368 N C Y 369 N N N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N O N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 S C N 389 N C N 390 N C N 391 N C N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C N 411 N C N 412 N C N 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C N 433 N C N 434 N C N 435 N C N 436 N N N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N N N 454 S C N 455 N C N 456 N O N 457 N C N 458 N C N 459 N S N 460 N C N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N NA N 474 N N N 475 S C N 476 N C N 477 N O N 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C N 485 N O N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N N N 498 S C N 499 N C N 500 N O N 501 N C N 502 N C N 503 N C N 504 N O N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N N N 515 S C N 516 N C N 517 N O N 518 N C N 519 N O N 520 N O N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N N N 529 S C N 530 N C N 531 N O N 532 R C N 533 N O N 534 N C N 535 N O N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N N N 546 S C N 547 N C N 548 N O N 549 N C Y 550 N C Y 551 N C Y 552 N C Y 553 N N Y 554 N C Y 555 N C Y 556 N C Y 557 N C Y 558 N C N 559 N O N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N N N 573 S C N 574 N C N 575 N O N 576 N C Y 577 N C Y 578 N C Y 579 N C Y 580 N C Y 581 N C Y 582 N C N 583 N O N 584 N O N 585 N H N 586 N H N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N N N 597 S C N 598 N C N 599 N O N 600 N C N 601 N C N 602 N C N 603 N O N 604 N H N 605 N H N 606 N H N 607 N H N 608 N H N 609 N H N 610 N H N 611 N H N 612 N H N 613 N H N 614 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing Y 176 N sing Y 177 N sing Y 178 N doub N 179 N sing Y 180 N sing Y 181 N sing Y 182 N doub N 183 N sing Y 184 N doub N 185 N sing N 186 N sing Y 187 N sing Y 188 N doub N 189 N sing Y 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing Y 249 N sing Y 250 N sing Y 251 N doub N 252 N sing Y 253 N sing N 254 N sing Y 255 N doub N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing Y 368 N sing Y 369 N doub Y 370 N doub N 371 N sing Y 372 N sing N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N doub N 472 N sing N 473 N sing N 474 N sing N 475 N sing Y 476 N doub Y 477 N sing Y 478 N sing N 479 N sing Y 480 N doub N 481 N sing Y 482 N doub N 483 N sing Y 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N doub N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N doub N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N doub N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N doub N 541 N sing N 542 N sing N 543 N sing N 544 N sing Y 545 N doub Y 546 N sing Y 547 N sing N 548 N sing Y 549 N doub Y 550 N sing Y 551 N sing N 552 N sing Y 553 N sing Y 554 N doub N 555 N sing Y 556 N doub N 557 N sing Y 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N doub N 569 N sing N 570 N sing N 571 N sing N 572 N sing Y 573 N doub Y 574 N sing Y 575 N sing N 576 N sing Y 577 N doub N 578 N sing Y 579 N doub N 580 N sing Y 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N doub N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N sing N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N sing DNA Repair (Amst.) 1568-7856 91-92 102867 102867 10.1016/j.dnarep.2020.102867 32454397 Molecular and structural characterization of disease-associated APE1 polymorphisms. 2020 10.2210/pdb6w3u/pdb pdb_00006w3u 100 1 N CMOS 2018-06-29 RDI CMOS_8M SINGLE WAVELENGTH M x-ray 1 1.00 1.0 4.2.2 ALS 1.00 SYNCHROTRON ALS BEAMLINE 4.2.2 3334.186 DNA (5'-D(P*TP*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3') 1 syn polymer 3077.070 DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(C7R))-3') 1 syn polymer 6424.148 DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') 1 syn polymer 31134.488 DNA-(apurinic or apyrimidinic site) lyase 3.1.-.-,4.2.99.18 R237C 2 man polymer 40.078 CALCIUM ION 1 syn non-polymer 62.068 1,2-ETHANEDIOL 2 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 154 nat water APEX nuclease,APEN,Apurinic-apyrimidinic endonuclease 1,APE-1,REF-1,Redox factor-1 no no (DT)(DC)(DG)(DA)(DC)(DG)(DG)(DA)(DT)(DC)(DC) TCGACGGATCC C polydeoxyribonucleotide no yes (DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(C7R) GCTGATGCGX D polydeoxyribonucleotide no no (DG)(DG)(DA)(DT)(DC)(DC)(DG)(DT)(DC)(DG)(DA)(DT)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG) (DC) GGATCCGTCGATCGCATCAGC E polydeoxyribonucleotide no no ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP SDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQECQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRL DYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP SDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQECQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRL DYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n y y n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 276 APEX1, APE, APE1, APEX, APX, HAP1, REF1 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.67 53.95 VAPOR DIFFUSION, SITTING DROP 7% PEG20000, 100 mM sodium citrate, 15% glycerol, 5 mM calcium chloride 291 -15.642 1 20 C 1 E 11 9.384 C_DT1:DA11_E 1 -24.917 -0.260 0.432 0.013 -3.440 1 19 C 2 E 10 7.329 C_DC2:DG10_E 2 -20.341 0.648 1.170 -0.191 3.879 1 C 3 E 8 -3.421 C_DG3:DT8_E 3 -15.451 1.938 -0.937 0.027 12.615 1 8 C 4 E 7 -27.601 C_DA4:DG7_E 4 -32.712 -1.321 -1.234 1.371 15.894 1 19 C 6 E 6 2.199 C_DG6:DC6_E 5 -7.432 -0.037 1.246 -0.459 17.927 1 19 C 7 E 5 -2.128 C_DG7:DC5_E 6 -17.988 -0.034 -0.059 0.510 -4.615 1 20 C 8 E 4 -23.848 C_DA8:DT4_E 7 -30.270 0.032 -0.155 0.179 3.462 1 20 C 9 E 3 0.603 C_DT9:DA3_E 8 -28.253 0.316 -0.445 0.372 -7.332 1 C 10 E 2 -1.460 C_DC10:DG2_E 9 -27.487 -1.101 -0.560 0.255 15.596 1 C 11 E 1 7.928 C_DC11:DG1_E 10 -19.495 -1.390 -1.413 0.510 -7.881 1 19 D 1 E 21 1.976 D_DG1:DC21_E 11 -1.614 -0.159 -0.073 -0.113 -0.957 1 19 D 2 E 20 4.382 D_DC2:DG20_E 12 -4.742 -0.680 0.319 -0.029 7.283 1 20 D 3 E 19 -6.422 D_DT3:DA19_E 13 -7.431 0.028 -0.277 -0.451 -6.214 1 19 D 4 E 18 7.356 D_DG4:DC18_E 14 -14.712 -0.299 -0.310 -0.240 -3.349 1 20 D 5 E 17 -0.845 D_DA5:DT17_E 15 -14.942 0.971 -0.497 -0.444 -1.126 1 20 D 6 E 16 -0.454 D_DT6:DA16_E 16 -10.301 -0.314 -0.113 -0.378 -4.748 1 19 D 7 E 15 4.176 D_DG7:DC15_E 17 -6.699 0.156 -0.023 -0.132 0.854 1 19 D 8 E 14 0.147 D_DC8:DG14_E 18 0.045 -0.242 0.255 -0.328 14.416 1 19 D 9 E 13 -1.698 D_DG9:DC13_E 19 0.648 0.664 0.374 -0.325 2.974 38.639 C C 1 2 8.700 E E 11 10 3.083 5.704 0.342 0.275 CC_DT1DC2:DG10DA11_EE 1 -7.392 11.275 37.536 -0.245 -1.373 4.381 61.909 C C 2 3 -6.401 E E 10 8 4.667 -6.561 1.532 0.681 CC_DC2DG3:DT8DG10_EE 2 -7.624 7.438 61.166 1.085 -1.981 2.976 19.302 C C 3 4 -0.105 E E 8 7 2.970 -0.035 -0.882 -0.573 CC_DG3DA4:DG7DT8_EE 3 -0.118 0.353 19.302 -1.693 2.575 4.896 58.491 C C 4 6 -17.937 E E 7 6 4.971 -17.222 1.074 -0.016 CC_DA4DG6:DC6DG7_EE 4 10.732 -11.178 55.153 1.390 -0.223 2.814 38.254 C C 6 7 24.048 E E 6 5 3.326 15.117 -0.066 -0.227 CC_DG6DG7:DC5DC6_EE 5 11.282 -17.948 33.432 -2.261 1.530 3.415 34.979 C C 7 8 6.276 E E 5 4 3.538 3.762 -0.188 -1.035 CC_DG7DA8:DT4DC5_EE 6 -2.640 4.404 34.685 -2.327 -0.112 3.002 34.557 C C 8 9 5.206 E E 4 3 3.016 3.076 0.764 -0.972 CC_DA8DT9:DA3DT4_EE 7 5.551 -9.395 33.987 -2.077 -0.489 3.256 36.294 C C 9 10 -14.468 E E 3 2 3.428 -8.925 -0.286 0.275 CC_DT9DC10:DG2DA3_EE 8 0.884 -1.433 35.205 1.737 0.588 3.050 39.039 C C 10 11 2.030 E E 2 1 2.728 1.310 1.285 1.135 CC_DC10DC11:DG1DG2_EE 9 17.803 -27.594 34.861 1.550 0.092 2.791 25.097 D D 1 2 15.846 E E 21 20 3.185 6.762 -0.089 -0.902 DD_DG1DC2:DG20DC21_EE 10 -4.692 10.994 23.730 -3.952 -1.097 2.909 32.433 D D 2 3 8.165 E E 20 19 3.109 4.539 -1.023 -0.443 DD_DC2DT3:DA19DG20_EE 11 3.136 -5.641 31.973 -1.533 2.342 3.453 35.956 D D 3 4 25.598 E E 19 18 3.699 15.300 1.265 -0.045 DD_DT3DG4:DC18DA19_EE 12 3.623 -6.061 32.438 -2.591 -1.454 3.247 41.238 D D 4 5 1.395 E E 18 17 3.240 0.982 -0.434 0.034 DD_DG4DA5:DT17DC18_EE 13 -0.829 1.177 41.219 -0.056 0.528 3.089 29.641 D D 5 6 2.984 E E 17 16 3.146 1.525 -0.061 -1.018 DD_DA5DT6:DA16DT17_EE 14 -1.864 3.648 29.545 -2.297 -0.255 3.330 34.869 D D 6 7 8.206 E E 16 15 3.440 4.902 -0.392 -0.600 DD_DT6DG7:DC15DA16_EE 15 -0.412 0.690 34.531 -1.775 0.589 3.093 27.262 D D 7 8 8.573 E E 15 14 3.241 4.024 0.228 -0.650 DD_DG7DC8:DG14DC15_EE 16 -1.692 3.605 26.917 -2.359 -0.896 2.706 31.597 D D 8 9 10.676 E E 14 13 2.849 5.782 0.250 -0.529 DD_DC8DG9:DC13DG14_EE 17 -0.288 0.532 31.076 -1.890 -0.505 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_conn_type repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2020-06-10 1 1 2023-10-18 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id United States National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS) R01-ES029203 United States American Cancer Society PF-1815401-DMC N RCSB Y RCSB 2020-03-09 REL REL CA CALCIUM ION EDO 1,2-ETHANEDIOL NA SODIUM ION CL CHLORIDE ION HOH water 32630 synthetic construct sample 1 11 32630 synthetic construct sample 1 10 32630 synthetic construct sample 1 21 N 5WN4 PDB experimental model CA 101 5 CA CA 101 D EDO 401 6 EDO EDO 401 A NA 402 7 NA NA 402 A CL 403 8 CL CL 403 A EDO 401 6 EDO EDO 401 B HOH 201 9 HOH HOH 201 D HOH 202 9 HOH HOH 202 D HOH 101 9 HOH HOH 101 E HOH 102 9 HOH HOH 102 E HOH 103 9 HOH HOH 103 E HOH 104 9 HOH HOH 104 E HOH 105 9 HOH HOH 105 E HOH 106 9 HOH HOH 106 E HOH 107 9 HOH HOH 107 E HOH 108 9 HOH HOH 108 E HOH 109 9 HOH HOH 109 E HOH 110 9 HOH HOH 110 E HOH 501 9 HOH HOH 501 A HOH 502 9 HOH HOH 502 A HOH 503 9 HOH HOH 503 A HOH 504 9 HOH HOH 504 A HOH 505 9 HOH HOH 505 A HOH 506 9 HOH HOH 506 A HOH 507 9 HOH HOH 507 A HOH 508 9 HOH HOH 508 A HOH 509 9 HOH HOH 509 A HOH 510 9 HOH HOH 510 A HOH 511 9 HOH HOH 511 A HOH 512 9 HOH HOH 512 A HOH 513 9 HOH HOH 513 A HOH 514 9 HOH HOH 514 A HOH 515 9 HOH HOH 515 A HOH 516 9 HOH HOH 516 A HOH 517 9 HOH HOH 517 A HOH 518 9 HOH HOH 518 A HOH 519 9 HOH HOH 519 A HOH 520 9 HOH HOH 520 A HOH 521 9 HOH HOH 521 A HOH 522 9 HOH HOH 522 A HOH 523 9 HOH HOH 523 A HOH 524 9 HOH HOH 524 A HOH 525 9 HOH HOH 525 A HOH 526 9 HOH HOH 526 A HOH 527 9 HOH HOH 527 A HOH 528 9 HOH HOH 528 A HOH 529 9 HOH HOH 529 A HOH 530 9 HOH HOH 530 A HOH 531 9 HOH HOH 531 A HOH 532 9 HOH HOH 532 A HOH 533 9 HOH HOH 533 A HOH 534 9 HOH HOH 534 A HOH 535 9 HOH HOH 535 A HOH 536 9 HOH HOH 536 A HOH 537 9 HOH HOH 537 A HOH 538 9 HOH HOH 538 A HOH 539 9 HOH HOH 539 A HOH 540 9 HOH HOH 540 A HOH 541 9 HOH HOH 541 A HOH 542 9 HOH HOH 542 A HOH 543 9 HOH HOH 543 A HOH 544 9 HOH HOH 544 A HOH 545 9 HOH HOH 545 A HOH 546 9 HOH HOH 546 A HOH 547 9 HOH HOH 547 A HOH 548 9 HOH HOH 548 A HOH 549 9 HOH HOH 549 A HOH 550 9 HOH HOH 550 A HOH 551 9 HOH HOH 551 A HOH 552 9 HOH HOH 552 A HOH 553 9 HOH HOH 553 A HOH 554 9 HOH HOH 554 A HOH 555 9 HOH HOH 555 A HOH 556 9 HOH HOH 556 A HOH 557 9 HOH HOH 557 A HOH 558 9 HOH HOH 558 A HOH 559 9 HOH HOH 559 A HOH 560 9 HOH HOH 560 A HOH 561 9 HOH HOH 561 A HOH 562 9 HOH HOH 562 A HOH 563 9 HOH HOH 563 A HOH 564 9 HOH HOH 564 A HOH 565 9 HOH HOH 565 A HOH 566 9 HOH HOH 566 A HOH 567 9 HOH HOH 567 A HOH 568 9 HOH HOH 568 A HOH 569 9 HOH HOH 569 A HOH 501 9 HOH HOH 501 B HOH 502 9 HOH HOH 502 B HOH 503 9 HOH HOH 503 B HOH 504 9 HOH HOH 504 B HOH 505 9 HOH HOH 505 B HOH 506 9 HOH HOH 506 B HOH 507 9 HOH HOH 507 B HOH 508 9 HOH HOH 508 B HOH 509 9 HOH HOH 509 B HOH 510 9 HOH HOH 510 B HOH 511 9 HOH HOH 511 B HOH 512 9 HOH HOH 512 B HOH 513 9 HOH HOH 513 B HOH 514 9 HOH HOH 514 B HOH 515 9 HOH HOH 515 B HOH 516 9 HOH HOH 516 B HOH 517 9 HOH HOH 517 B HOH 518 9 HOH HOH 518 B HOH 519 9 HOH HOH 519 B HOH 520 9 HOH HOH 520 B HOH 521 9 HOH HOH 521 B HOH 522 9 HOH HOH 522 B HOH 523 9 HOH HOH 523 B HOH 524 9 HOH HOH 524 B HOH 525 9 HOH HOH 525 B HOH 526 9 HOH HOH 526 B HOH 527 9 HOH HOH 527 B HOH 528 9 HOH HOH 528 B HOH 529 9 HOH HOH 529 B HOH 530 9 HOH HOH 530 B HOH 531 9 HOH HOH 531 B HOH 532 9 HOH HOH 532 B HOH 533 9 HOH HOH 533 B HOH 534 9 HOH HOH 534 B HOH 535 9 HOH HOH 535 B HOH 536 9 HOH HOH 536 B HOH 537 9 HOH HOH 537 B HOH 538 9 HOH HOH 538 B HOH 539 9 HOH HOH 539 B HOH 540 9 HOH HOH 540 B HOH 541 9 HOH HOH 541 B HOH 542 9 HOH HOH 542 B HOH 543 9 HOH HOH 543 B HOH 544 9 HOH HOH 544 B HOH 545 9 HOH HOH 545 B HOH 546 9 HOH HOH 546 B HOH 547 9 HOH HOH 547 B HOH 548 9 HOH HOH 548 B HOH 549 9 HOH HOH 549 B HOH 550 9 HOH HOH 550 B HOH 551 9 HOH HOH 551 B HOH 552 9 HOH HOH 552 B HOH 553 9 HOH HOH 553 B HOH 554 9 HOH HOH 554 B HOH 555 9 HOH HOH 555 B HOH 556 9 HOH HOH 556 B HOH 557 9 HOH HOH 557 B HOH 558 9 HOH HOH 558 B HOH 559 9 HOH HOH 559 B HOH 560 9 HOH HOH 560 B HOH 561 9 HOH HOH 561 B HOH 562 9 HOH HOH 562 B HOH 563 9 HOH HOH 563 B HOH 564 9 HOH HOH 564 B HOH 565 9 HOH HOH 565 B HOH 566 9 HOH HOH 566 B HOH 567 9 HOH HOH 567 B HOH 568 9 HOH HOH 568 B HOH 569 9 HOH HOH 569 B HOH 570 9 HOH HOH 570 B HOH 571 9 HOH HOH 571 B HOH 572 9 HOH HOH 572 B HOH 573 9 HOH HOH 573 B DT 1 n 1 DT 1 C DC 2 n 2 DC 2 C DG 3 n 3 DG 3 C DA 4 n 4 DA 4 C DC 5 n 5 DC 5 C DG 6 n 6 DG 6 C DG 7 n 7 DG 7 C DA 8 n 8 DA 8 C DT 9 n 9 DT 9 C DC 10 n 10 DC 10 C DC 11 n 11 DC 11 C DG 1 n 1 DG 1 D DC 2 n 2 DC 2 D DT 3 n 3 DT 3 D DG 4 n 4 DG 4 D DA 5 n 5 DA 5 D DT 6 n 6 DT 6 D DG 7 n 7 DG 7 D DC 8 n 8 DC 8 D DG 9 n 9 DG 9 D C7R 10 y 10 C7R 10 D C7S 10 y 10 C7S 10 D DG 1 n 1 DG 1 E DG 2 n 2 DG 2 E DA 3 n 3 DA 3 E DT 4 n 4 DT 4 E DC 5 n 5 DC 5 E DC 6 n 6 DC 6 E DG 7 n 7 DG 7 E DT 8 n 8 DT 8 E DC 9 n 9 DC 9 E DG 10 n 10 DG 10 E DA 11 n 11 DA 11 E DT 12 n 12 DT 12 E DC 13 n 13 DC 13 E DG 14 n 14 DG 14 E DC 15 n 15 DC 15 E DA 16 n 16 DA 16 E DT 17 n 17 DT 17 E DC 18 n 18 DC 18 E DA 19 n 19 DA 19 E DG 20 n 20 DG 20 E DC 21 n 21 DC 21 E ALA 43 n 1 ALA 43 A LEU 44 n 2 LEU 44 A TYR 45 n 3 TYR 45 A GLU 46 n 4 GLU 46 A ASP 47 n 5 ASP 47 A PRO 48 n 6 PRO 48 A PRO 49 n 7 PRO 49 A ASP 50 n 8 ASP 50 A GLN 51 n 9 GLN 51 A LYS 52 n 10 LYS 52 A THR 53 n 11 THR 53 A SER 54 n 12 SER 54 A PRO 55 n 13 PRO 55 A SER 56 n 14 SER 56 A GLY 57 n 15 GLY 57 A LYS 58 n 16 LYS 58 A PRO 59 n 17 PRO 59 A ALA 60 n 18 ALA 60 A THR 61 n 19 THR 61 A LEU 62 n 20 LEU 62 A LYS 63 n 21 LYS 63 A ILE 64 n 22 ILE 64 A CYS 65 n 23 CYS 65 A SER 66 n 24 SER 66 A TRP 67 n 25 TRP 67 A ASN 68 n 26 ASN 68 A VAL 69 n 27 VAL 69 A ASP 70 n 28 ASP 70 A GLY 71 n 29 GLY 71 A LEU 72 n 30 LEU 72 A ARG 73 n 31 ARG 73 A ALA 74 n 32 ALA 74 A TRP 75 n 33 TRP 75 A ILE 76 n 34 ILE 76 A LYS 77 n 35 LYS 77 A LYS 78 n 36 LYS 78 A LYS 79 n 37 LYS 79 A GLY 80 n 38 GLY 80 A LEU 81 n 39 LEU 81 A ASP 82 n 40 ASP 82 A TRP 83 n 41 TRP 83 A VAL 84 n 42 VAL 84 A LYS 85 n 43 LYS 85 A GLU 86 n 44 GLU 86 A GLU 87 n 45 GLU 87 A ALA 88 n 46 ALA 88 A PRO 89 n 47 PRO 89 A ASP 90 n 48 ASP 90 A ILE 91 n 49 ILE 91 A LEU 92 n 50 LEU 92 A CYS 93 n 51 CYS 93 A LEU 94 n 52 LEU 94 A GLN 95 n 53 GLN 95 A GLU 96 n 54 GLU 96 A THR 97 n 55 THR 97 A LYS 98 n 56 LYS 98 A CYS 99 n 57 CYS 99 A SER 100 n 58 SER 100 A GLU 101 n 59 GLU 101 A ASN 102 n 60 ASN 102 A LYS 103 n 61 LYS 103 A LEU 104 n 62 LEU 104 A PRO 105 n 63 PRO 105 A ALA 106 n 64 ALA 106 A GLU 107 n 65 GLU 107 A LEU 108 n 66 LEU 108 A GLN 109 n 67 GLN 109 A GLU 110 n 68 GLU 110 A LEU 111 n 69 LEU 111 A PRO 112 n 70 PRO 112 A GLY 113 n 71 GLY 113 A LEU 114 n 72 LEU 114 A SER 115 n 73 SER 115 A HIS 116 n 74 HIS 116 A GLN 117 n 75 GLN 117 A TYR 118 n 76 TYR 118 A TRP 119 n 77 TRP 119 A SER 120 n 78 SER 120 A ALA 121 n 79 ALA 121 A PRO 122 n 80 PRO 122 A SER 123 n 81 SER 123 A ASP 124 n 82 ASP 124 A LYS 125 n 83 LYS 125 A GLU 126 n 84 GLU 126 A GLY 127 n 85 GLY 127 A TYR 128 n 86 TYR 128 A SER 129 n 87 SER 129 A GLY 130 n 88 GLY 130 A VAL 131 n 89 VAL 131 A GLY 132 n 90 GLY 132 A LEU 133 n 91 LEU 133 A LEU 134 n 92 LEU 134 A SER 135 n 93 SER 135 A ARG 136 n 94 ARG 136 A GLN 137 n 95 GLN 137 A CYS 138 n 96 CYS 138 A PRO 139 n 97 PRO 139 A LEU 140 n 98 LEU 140 A LYS 141 n 99 LYS 141 A VAL 142 n 100 VAL 142 A SER 143 n 101 SER 143 A TYR 144 n 102 TYR 144 A GLY 145 n 103 GLY 145 A ILE 146 n 104 ILE 146 A GLY 147 n 105 GLY 147 A ASP 148 n 106 ASP 148 A GLU 149 n 107 GLU 149 A GLU 150 n 108 GLU 150 A HIS 151 n 109 HIS 151 A ASP 152 n 110 ASP 152 A GLN 153 n 111 GLN 153 A GLU 154 n 112 GLU 154 A GLY 155 n 113 GLY 155 A ARG 156 n 114 ARG 156 A VAL 157 n 115 VAL 157 A ILE 158 n 116 ILE 158 A VAL 159 n 117 VAL 159 A ALA 160 n 118 ALA 160 A GLU 161 n 119 GLU 161 A PHE 162 n 120 PHE 162 A ASP 163 n 121 ASP 163 A SER 164 n 122 SER 164 A PHE 165 n 123 PHE 165 A VAL 166 n 124 VAL 166 A LEU 167 n 125 LEU 167 A VAL 168 n 126 VAL 168 A THR 169 n 127 THR 169 A ALA 170 n 128 ALA 170 A TYR 171 n 129 TYR 171 A VAL 172 n 130 VAL 172 A PRO 173 n 131 PRO 173 A ASN 174 n 132 ASN 174 A ALA 175 n 133 ALA 175 A GLY 176 n 134 GLY 176 A ARG 177 n 135 ARG 177 A GLY 178 n 136 GLY 178 A LEU 179 n 137 LEU 179 A VAL 180 n 138 VAL 180 A ARG 181 n 139 ARG 181 A LEU 182 n 140 LEU 182 A GLU 183 n 141 GLU 183 A TYR 184 n 142 TYR 184 A ARG 185 n 143 ARG 185 A GLN 186 n 144 GLN 186 A ARG 187 n 145 ARG 187 A TRP 188 n 146 TRP 188 A ASP 189 n 147 ASP 189 A GLU 190 n 148 GLU 190 A ALA 191 n 149 ALA 191 A PHE 192 n 150 PHE 192 A ARG 193 n 151 ARG 193 A LYS 194 n 152 LYS 194 A PHE 195 n 153 PHE 195 A LEU 196 n 154 LEU 196 A LYS 197 n 155 LYS 197 A GLY 198 n 156 GLY 198 A LEU 199 n 157 LEU 199 A ALA 200 n 158 ALA 200 A SER 201 n 159 SER 201 A ARG 202 n 160 ARG 202 A LYS 203 n 161 LYS 203 A PRO 204 n 162 PRO 204 A LEU 205 n 163 LEU 205 A VAL 206 n 164 VAL 206 A LEU 207 n 165 LEU 207 A CYS 208 n 166 CYS 208 A GLY 209 n 167 GLY 209 A ASP 210 n 168 ASP 210 A LEU 211 n 169 LEU 211 A ASN 212 n 170 ASN 212 A VAL 213 n 171 VAL 213 A ALA 214 n 172 ALA 214 A HIS 215 n 173 HIS 215 A GLU 216 n 174 GLU 216 A GLU 217 n 175 GLU 217 A ILE 218 n 176 ILE 218 A ASP 219 n 177 ASP 219 A LEU 220 n 178 LEU 220 A ARG 221 n 179 ARG 221 A ASN 222 n 180 ASN 222 A PRO 223 n 181 PRO 223 A LYS 224 n 182 LYS 224 A GLY 225 n 183 GLY 225 A ASN 226 n 184 ASN 226 A LYS 227 n 185 LYS 227 A LYS 228 n 186 LYS 228 A ASN 229 n 187 ASN 229 A ALA 230 n 188 ALA 230 A GLY 231 n 189 GLY 231 A PHE 232 n 190 PHE 232 A THR 233 n 191 THR 233 A PRO 234 n 192 PRO 234 A GLN 235 n 193 GLN 235 A GLU 236 n 194 GLU 236 A CYS 237 n 195 CYS 237 A GLN 238 n 196 GLN 238 A GLY 239 n 197 GLY 239 A PHE 240 n 198 PHE 240 A GLY 241 n 199 GLY 241 A GLU 242 n 200 GLU 242 A LEU 243 n 201 LEU 243 A LEU 244 n 202 LEU 244 A GLN 245 n 203 GLN 245 A ALA 246 n 204 ALA 246 A VAL 247 n 205 VAL 247 A PRO 248 n 206 PRO 248 A LEU 249 n 207 LEU 249 A ALA 250 n 208 ALA 250 A ASP 251 n 209 ASP 251 A SER 252 n 210 SER 252 A PHE 253 n 211 PHE 253 A ARG 254 n 212 ARG 254 A HIS 255 n 213 HIS 255 A LEU 256 n 214 LEU 256 A TYR 257 n 215 TYR 257 A PRO 258 n 216 PRO 258 A ASN 259 n 217 ASN 259 A THR 260 n 218 THR 260 A PRO 261 n 219 PRO 261 A TYR 262 n 220 TYR 262 A ALA 263 n 221 ALA 263 A TYR 264 n 222 TYR 264 A THR 265 n 223 THR 265 A PHE 266 n 224 PHE 266 A TRP 267 n 225 TRP 267 A THR 268 n 226 THR 268 A TYR 269 n 227 TYR 269 A MET 270 n 228 MET 270 A MET 271 n 229 MET 271 A ASN 272 n 230 ASN 272 A ALA 273 n 231 ALA 273 A ARG 274 n 232 ARG 274 A SER 275 n 233 SER 275 A LYS 276 n 234 LYS 276 A ASN 277 n 235 ASN 277 A VAL 278 n 236 VAL 278 A GLY 279 n 237 GLY 279 A TRP 280 n 238 TRP 280 A ARG 281 n 239 ARG 281 A LEU 282 n 240 LEU 282 A ASP 283 n 241 ASP 283 A TYR 284 n 242 TYR 284 A PHE 285 n 243 PHE 285 A LEU 286 n 244 LEU 286 A LEU 287 n 245 LEU 287 A SER 288 n 246 SER 288 A HIS 289 n 247 HIS 289 A SER 290 n 248 SER 290 A LEU 291 n 249 LEU 291 A LEU 292 n 250 LEU 292 A PRO 293 n 251 PRO 293 A ALA 294 n 252 ALA 294 A LEU 295 n 253 LEU 295 A CYS 296 n 254 CYS 296 A ASP 297 n 255 ASP 297 A SER 298 n 256 SER 298 A LYS 299 n 257 LYS 299 A ILE 300 n 258 ILE 300 A ARG 301 n 259 ARG 301 A SER 302 n 260 SER 302 A LYS 303 n 261 LYS 303 A ALA 304 n 262 ALA 304 A LEU 305 n 263 LEU 305 A GLY 306 n 264 GLY 306 A SER 307 n 265 SER 307 A ASP 308 n 266 ASP 308 A HIS 309 n 267 HIS 309 A CYS 310 n 268 CYS 310 A PRO 311 n 269 PRO 311 A ILE 312 n 270 ILE 312 A THR 313 n 271 THR 313 A LEU 314 n 272 LEU 314 A TYR 315 n 273 TYR 315 A LEU 316 n 274 LEU 316 A ALA 317 n 275 ALA 317 A LEU 318 n 276 LEU 318 A ALA 43 n 1 ALA 43 B LEU 44 n 2 LEU 44 B TYR 45 n 3 TYR 45 B GLU 46 n 4 GLU 46 B ASP 47 n 5 ASP 47 B PRO 48 n 6 PRO 48 B PRO 49 n 7 PRO 49 B ASP 50 n 8 ASP 50 B GLN 51 n 9 GLN 51 B LYS 52 n 10 LYS 52 B THR 53 n 11 THR 53 B SER 54 n 12 SER 54 B PRO 55 n 13 PRO 55 B SER 56 n 14 SER 56 B GLY 57 n 15 GLY 57 B LYS 58 n 16 LYS 58 B PRO 59 n 17 PRO 59 B ALA 60 n 18 ALA 60 B THR 61 n 19 THR 61 B LEU 62 n 20 LEU 62 B LYS 63 n 21 LYS 63 B ILE 64 n 22 ILE 64 B CYS 65 n 23 CYS 65 B SER 66 n 24 SER 66 B TRP 67 n 25 TRP 67 B ASN 68 n 26 ASN 68 B VAL 69 n 27 VAL 69 B ASP 70 n 28 ASP 70 B GLY 71 n 29 GLY 71 B LEU 72 n 30 LEU 72 B ARG 73 n 31 ARG 73 B ALA 74 n 32 ALA 74 B TRP 75 n 33 TRP 75 B ILE 76 n 34 ILE 76 B LYS 77 n 35 LYS 77 B LYS 78 n 36 LYS 78 B LYS 79 n 37 LYS 79 B GLY 80 n 38 GLY 80 B LEU 81 n 39 LEU 81 B ASP 82 n 40 ASP 82 B TRP 83 n 41 TRP 83 B VAL 84 n 42 VAL 84 B LYS 85 n 43 LYS 85 B GLU 86 n 44 GLU 86 B GLU 87 n 45 GLU 87 B ALA 88 n 46 ALA 88 B PRO 89 n 47 PRO 89 B ASP 90 n 48 ASP 90 B ILE 91 n 49 ILE 91 B LEU 92 n 50 LEU 92 B CYS 93 n 51 CYS 93 B LEU 94 n 52 LEU 94 B GLN 95 n 53 GLN 95 B GLU 96 n 54 GLU 96 B THR 97 n 55 THR 97 B LYS 98 n 56 LYS 98 B CYS 99 n 57 CYS 99 B SER 100 n 58 SER 100 B GLU 101 n 59 GLU 101 B ASN 102 n 60 ASN 102 B LYS 103 n 61 LYS 103 B LEU 104 n 62 LEU 104 B PRO 105 n 63 PRO 105 B ALA 106 n 64 ALA 106 B GLU 107 n 65 GLU 107 B LEU 108 n 66 LEU 108 B GLN 109 n 67 GLN 109 B GLU 110 n 68 GLU 110 B LEU 111 n 69 LEU 111 B PRO 112 n 70 PRO 112 B GLY 113 n 71 GLY 113 B LEU 114 n 72 LEU 114 B SER 115 n 73 SER 115 B HIS 116 n 74 HIS 116 B GLN 117 n 75 GLN 117 B TYR 118 n 76 TYR 118 B TRP 119 n 77 TRP 119 B SER 120 n 78 SER 120 B ALA 121 n 79 ALA 121 B PRO 122 n 80 PRO 122 B SER 123 n 81 SER 123 B ASP 124 n 82 ASP 124 B LYS 125 n 83 LYS 125 B GLU 126 n 84 GLU 126 B GLY 127 n 85 GLY 127 B TYR 128 n 86 TYR 128 B SER 129 n 87 SER 129 B GLY 130 n 88 GLY 130 B VAL 131 n 89 VAL 131 B GLY 132 n 90 GLY 132 B LEU 133 n 91 LEU 133 B LEU 134 n 92 LEU 134 B SER 135 n 93 SER 135 B ARG 136 n 94 ARG 136 B GLN 137 n 95 GLN 137 B CYS 138 n 96 CYS 138 B PRO 139 n 97 PRO 139 B LEU 140 n 98 LEU 140 B LYS 141 n 99 LYS 141 B VAL 142 n 100 VAL 142 B SER 143 n 101 SER 143 B TYR 144 n 102 TYR 144 B GLY 145 n 103 GLY 145 B ILE 146 n 104 ILE 146 B GLY 147 n 105 GLY 147 B ASP 148 n 106 ASP 148 B GLU 149 n 107 GLU 149 B GLU 150 n 108 GLU 150 B HIS 151 n 109 HIS 151 B ASP 152 n 110 ASP 152 B GLN 153 n 111 GLN 153 B GLU 154 n 112 GLU 154 B GLY 155 n 113 GLY 155 B ARG 156 n 114 ARG 156 B VAL 157 n 115 VAL 157 B ILE 158 n 116 ILE 158 B VAL 159 n 117 VAL 159 B ALA 160 n 118 ALA 160 B GLU 161 n 119 GLU 161 B PHE 162 n 120 PHE 162 B ASP 163 n 121 ASP 163 B SER 164 n 122 SER 164 B PHE 165 n 123 PHE 165 B VAL 166 n 124 VAL 166 B LEU 167 n 125 LEU 167 B VAL 168 n 126 VAL 168 B THR 169 n 127 THR 169 B ALA 170 n 128 ALA 170 B TYR 171 n 129 TYR 171 B VAL 172 n 130 VAL 172 B PRO 173 n 131 PRO 173 B ASN 174 n 132 ASN 174 B ALA 175 n 133 ALA 175 B GLY 176 n 134 GLY 176 B ARG 177 n 135 ARG 177 B GLY 178 n 136 GLY 178 B LEU 179 n 137 LEU 179 B VAL 180 n 138 VAL 180 B ARG 181 n 139 ARG 181 B LEU 182 n 140 LEU 182 B GLU 183 n 141 GLU 183 B TYR 184 n 142 TYR 184 B ARG 185 n 143 ARG 185 B GLN 186 n 144 GLN 186 B ARG 187 n 145 ARG 187 B TRP 188 n 146 TRP 188 B ASP 189 n 147 ASP 189 B GLU 190 n 148 GLU 190 B ALA 191 n 149 ALA 191 B PHE 192 n 150 PHE 192 B ARG 193 n 151 ARG 193 B LYS 194 n 152 LYS 194 B PHE 195 n 153 PHE 195 B LEU 196 n 154 LEU 196 B LYS 197 n 155 LYS 197 B GLY 198 n 156 GLY 198 B LEU 199 n 157 LEU 199 B ALA 200 n 158 ALA 200 B SER 201 n 159 SER 201 B ARG 202 n 160 ARG 202 B LYS 203 n 161 LYS 203 B PRO 204 n 162 PRO 204 B LEU 205 n 163 LEU 205 B VAL 206 n 164 VAL 206 B LEU 207 n 165 LEU 207 B CYS 208 n 166 CYS 208 B GLY 209 n 167 GLY 209 B ASP 210 n 168 ASP 210 B LEU 211 n 169 LEU 211 B ASN 212 n 170 ASN 212 B VAL 213 n 171 VAL 213 B ALA 214 n 172 ALA 214 B HIS 215 n 173 HIS 215 B GLU 216 n 174 GLU 216 B GLU 217 n 175 GLU 217 B ILE 218 n 176 ILE 218 B ASP 219 n 177 ASP 219 B LEU 220 n 178 LEU 220 B ARG 221 n 179 ARG 221 B ASN 222 n 180 ASN 222 B PRO 223 n 181 PRO 223 B LYS 224 n 182 LYS 224 B GLY 225 n 183 GLY 225 B ASN 226 n 184 ASN 226 B LYS 227 n 185 LYS 227 B LYS 228 n 186 LYS 228 B ASN 229 n 187 ASN 229 B ALA 230 n 188 ALA 230 B GLY 231 n 189 GLY 231 B PHE 232 n 190 PHE 232 B THR 233 n 191 THR 233 B PRO 234 n 192 PRO 234 B GLN 235 n 193 GLN 235 B GLU 236 n 194 GLU 236 B CYS 237 n 195 CYS 237 B GLN 238 n 196 GLN 238 B GLY 239 n 197 GLY 239 B PHE 240 n 198 PHE 240 B GLY 241 n 199 GLY 241 B GLU 242 n 200 GLU 242 B LEU 243 n 201 LEU 243 B LEU 244 n 202 LEU 244 B GLN 245 n 203 GLN 245 B ALA 246 n 204 ALA 246 B VAL 247 n 205 VAL 247 B PRO 248 n 206 PRO 248 B LEU 249 n 207 LEU 249 B ALA 250 n 208 ALA 250 B ASP 251 n 209 ASP 251 B SER 252 n 210 SER 252 B PHE 253 n 211 PHE 253 B ARG 254 n 212 ARG 254 B HIS 255 n 213 HIS 255 B LEU 256 n 214 LEU 256 B TYR 257 n 215 TYR 257 B PRO 258 n 216 PRO 258 B ASN 259 n 217 ASN 259 B THR 260 n 218 THR 260 B PRO 261 n 219 PRO 261 B TYR 262 n 220 TYR 262 B ALA 263 n 221 ALA 263 B TYR 264 n 222 TYR 264 B THR 265 n 223 THR 265 B PHE 266 n 224 PHE 266 B TRP 267 n 225 TRP 267 B THR 268 n 226 THR 268 B TYR 269 n 227 TYR 269 B MET 270 n 228 MET 270 B MET 271 n 229 MET 271 B ASN 272 n 230 ASN 272 B ALA 273 n 231 ALA 273 B ARG 274 n 232 ARG 274 B SER 275 n 233 SER 275 B LYS 276 n 234 LYS 276 B ASN 277 n 235 ASN 277 B VAL 278 n 236 VAL 278 B GLY 279 n 237 GLY 279 B TRP 280 n 238 TRP 280 B ARG 281 n 239 ARG 281 B LEU 282 n 240 LEU 282 B ASP 283 n 241 ASP 283 B TYR 284 n 242 TYR 284 B PHE 285 n 243 PHE 285 B LEU 286 n 244 LEU 286 B LEU 287 n 245 LEU 287 B SER 288 n 246 SER 288 B HIS 289 n 247 HIS 289 B SER 290 n 248 SER 290 B LEU 291 n 249 LEU 291 B LEU 292 n 250 LEU 292 B PRO 293 n 251 PRO 293 B ALA 294 n 252 ALA 294 B LEU 295 n 253 LEU 295 B CYS 296 n 254 CYS 296 B ASP 297 n 255 ASP 297 B SER 298 n 256 SER 298 B LYS 299 n 257 LYS 299 B ILE 300 n 258 ILE 300 B ARG 301 n 259 ARG 301 B SER 302 n 260 SER 302 B LYS 303 n 261 LYS 303 B ALA 304 n 262 ALA 304 B LEU 305 n 263 LEU 305 B GLY 306 n 264 GLY 306 B SER 307 n 265 SER 307 B ASP 308 n 266 ASP 308 B HIS 309 n 267 HIS 309 B CYS 310 n 268 CYS 310 B PRO 311 n 269 PRO 311 B ILE 312 n 270 ILE 312 B THR 313 n 271 THR 313 B LEU 314 n 272 LEU 314 B TYR 315 n 273 TYR 315 B LEU 316 n 274 LEU 316 B ALA 317 n 275 ALA 317 B LEU 318 n 276 LEU 318 B author_and_software_defined_assembly PISA 4 tetrameric author_and_software_defined_assembly PISA 1 monomeric none 4850 -33 17600 490 -21 12080 A SER 66 D OG SER 24 1_555 A NA 402 H NA NA 1_555 A GLN 95 D OE1 GLN 53 1_555 74.6 A SER 66 D OG SER 24 1_555 A NA 402 H NA NA 1_555 A ASP 283 D OD1 ASP 241 1_555 159.1 A GLN 95 D OE1 GLN 53 1_555 A NA 402 H NA NA 1_555 A ASP 283 D OD1 ASP 241 1_555 107.2 A SER 66 D OG SER 24 1_555 A NA 402 H NA NA 1_555 A HOH 511 M O HOH 1_555 129.4 A GLN 95 D OE1 GLN 53 1_555 A NA 402 H NA NA 1_555 A HOH 511 M O HOH 1_555 107.8 A ASP 283 D OD1 ASP 241 1_555 A NA 402 H NA NA 1_555 A HOH 511 M O HOH 1_555 70.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N HIS 116 D N HIS 74 A O SER 135 D O SER 93 A O LEU 134 D O LEU 92 A N LEU 92 D N LEU 50 A O CYS 93 D O CYS 51 A N CYS 65 D N CYS 23 A N ILE 64 D N ILE 22 A O LEU 314 D O LEU 272 A O THR 313 D O THR 271 A N LYS 299 D N LYS 257 A N LYS 141 D N LYS 99 A O GLU 161 D O GLU 119 A N ALA 160 D N ALA 118 A O LEU 167 D O LEU 125 A N VAL 168 D N VAL 126 A O VAL 206 D O VAL 164 A N LEU 207 D N LEU 165 A O LEU 286 D O LEU 244 A O LEU 287 D O LEU 245 A N ALA 250 D N ALA 208 B N SER 120 E N SER 78 B O VAL 131 E O VAL 89 B O LEU 134 E O LEU 92 B N LEU 92 E N LEU 50 B O ILE 91 E O ILE 49 B N CYS 65 E N CYS 23 B N SER 66 E N SER 24 B O ILE 312 E O ILE 270 B O THR 313 E O THR 271 B N LYS 299 E N LYS 257 B N LYS 141 E N LYS 99 B O GLU 161 E O GLU 119 B N ALA 160 E N ALA 118 B O LEU 167 E O LEU 125 B N VAL 168 E N VAL 126 B O CYS 208 E O CYS 166 B N LEU 207 E N LEU 165 B O LEU 286 E O LEU 244 B O LEU 287 E O LEU 245 B N ALA 250 E N ALA 208 1 A CG ASP 124 D CG ASP 82 1 Y 1 A OD1 ASP 124 D OD1 ASP 82 1 Y 1 A OD2 ASP 124 D OD2 ASP 82 1 Y 1 A CG LYS 125 D CG LYS 83 1 Y 1 A CD LYS 125 D CD LYS 83 1 Y 1 A CE LYS 125 D CE LYS 83 1 Y 1 A NZ LYS 125 D NZ LYS 83 1 Y 1 A CG LYS 224 D CG LYS 182 1 Y 1 A CD LYS 224 D CD LYS 182 1 Y 1 A CE LYS 224 D CE LYS 182 1 Y 1 A NZ LYS 224 D NZ LYS 182 1 Y 1 B CG GLN 109 E CG GLN 67 1 Y 1 B CD GLN 109 E CD GLN 67 1 Y 1 B OE1 GLN 109 E OE1 GLN 67 1 Y 1 B NE2 GLN 109 E NE2 GLN 67 1 Y 1 B CG GLU 110 E CG GLU 68 1 Y 1 B CD GLU 110 E CD GLU 68 1 Y 1 B OE1 GLU 110 E OE1 GLU 68 1 Y 1 B OE2 GLU 110 E OE2 GLU 68 1 Y 1 B CG ASP 124 E CG ASP 82 1 Y 1 B OD1 ASP 124 E OD1 ASP 82 1 Y 1 B OD2 ASP 124 E OD2 ASP 82 1 Y 1 D B SP2 OH C7R TYR 10 171 2.07 A 1 A SER 54 -47.11 156.94 1 A LYS 79 84.69 28.02 1 A LEU 114 -140.55 59.53 1 A SER 123 -82.95 -70.75 1 A SER 129 57.67 -140.42 1 A LYS 141 -172.40 128.34 1 A PHE 232 -143.44 27.54 1 B ASP 70 34.74 66.29 1 B CYS 99 -163.23 118.42 1 B LEU 111 -152.26 68.52 1 B ASP 124 -146.28 46.17 1 B SER 129 53.24 -136.91 1 B PHE 232 -141.35 28.41 51.39 0.250 0.184 0.188 2.40 46.76 1441 28949 4.980 92.7 0.340 1 FREE R-VALUE 1.350 MOLECULAR REPLACEMENT 28.941 0.90 1.11 5WN4 2.40 46.76 154 5402 11 873 4364 0.011 5468 1.108 7593 24.599 2073 0.052 816 0.006 833 0.3145 0.2557 2.4900 92 1849 62.00 0.2870 0.2517 2.5900 139 2219 77.00 0.3649 0.2381 2.7000 142 2888 97.00 0.2992 0.2334 2.8500 129 2919 99.00 0.3263 0.2394 3.0200 155 2903 98.00 0.3293 0.2164 3.2600 160 2906 98.00 0.2539 0.1932 3.5800 144 2918 98.00 0.2483 0.1694 4.1000 141 2941 99.00 0.1983 0.1476 5.1700 166 2955 99.00 0.1949 0.1494 46.7600 173 3010 99.00 44.21 2.400 46.760 6W3U 28973 0.089 1 12.0000 3.500 92.9 2.40 2.49 2048 0.683 0.971 1 refinement PHENIX 1.17.1_3660 data scaling XDS phasing PHENIX 1.17.1_3660 data reduction XDS 4 monoclinic P 1 21 1 P 2yb x,y,z -x,y+1/2,-z N APE1 exonuclease substrate complex R237C 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N 7 N N 8 N N 6 N N 9 N N 9 N N 9 N N 9 N N A GLY 71 D GLY 29 HELX_P A LYS 78 D LYS 36 1 AA1 8 A LYS 79 D LYS 37 HELX_P A ALA 88 D ALA 46 1 AA2 10 A SER 100 D SER 58 HELX_P A LEU 104 D LEU 62 5 AA3 5 A PRO 105 D PRO 63 HELX_P A LEU 111 D LEU 69 5 AA4 7 A ASP 148 D ASP 106 HELX_P A ASP 152 D ASP 110 5 AA5 5 A GLY 176 D GLY 134 HELX_P A VAL 180 D VAL 138 5 AA6 5 A ARG 181 D ARG 139 HELX_P A LYS 203 D LYS 161 1 AA7 23 A GLU 216 D GLU 174 HELX_P A LEU 220 D LEU 178 5 AA8 5 A PRO 223 D PRO 181 HELX_P A LYS 227 D LYS 185 5 AA9 5 A THR 233 D THR 191 HELX_P A VAL 247 D VAL 205 1 AB1 15 A SER 252 D SER 210 HELX_P A TYR 257 D TYR 215 1 AB2 6 A TYR 269 D TYR 227 HELX_P A MET 271 D MET 229 5 AB3 3 A ASN 272 D ASN 230 HELX_P A ASN 277 D ASN 235 1 AB4 6 A HIS 289 D HIS 247 HELX_P A PRO 293 D PRO 251 5 AB5 5 B GLY 71 E GLY 29 HELX_P B LYS 78 E LYS 36 1 AB6 8 B LYS 79 E LYS 37 HELX_P B ALA 88 E ALA 46 1 AB7 10 B SER 100 E SER 58 HELX_P B LEU 104 E LEU 62 5 AB8 5 B PRO 105 E PRO 63 HELX_P B GLN 109 E GLN 67 5 AB9 5 B ASP 148 E ASP 106 HELX_P B ASP 152 E ASP 110 5 AC1 5 B GLY 176 E GLY 134 HELX_P B VAL 180 E VAL 138 5 AC2 5 B ARG 181 E ARG 139 HELX_P B SER 201 E SER 159 1 AC3 21 B GLU 216 E GLU 174 HELX_P B LEU 220 E LEU 178 5 AC4 5 B THR 233 E THR 191 HELX_P B VAL 247 E VAL 205 1 AC5 15 B SER 252 E SER 210 HELX_P B TYR 257 E TYR 215 1 AC6 6 B TYR 269 E TYR 227 HELX_P B ALA 273 E ALA 231 5 AC7 5 B HIS 289 E HIS 247 HELX_P B PRO 293 E PRO 251 5 AC8 5 covale 1.602 both A D DG 9 B O3' DG 9 1_555 D C7R 10 B P C7R 10 1_555 covale 1.606 both B D DG 9 B O3' DG 9 1_555 D C7S 10 B P C7S 10 1_555 metalc 2.919 D DC 8 B OP2 DC 8 1_555 D CA 101 F CA CA 1_555 metalc 2.925 A SER 66 D OG SER 24 1_555 A NA 402 H NA NA 1_555 metalc 2.637 A GLN 95 D OE1 GLN 53 1_555 A NA 402 H NA NA 1_555 metalc 2.937 A ASP 283 D OD1 ASP 241 1_555 A NA 402 H NA NA 1_555 metalc 3.118 A NA 402 H NA NA 1_555 A HOH 511 M O HOH 1_555 hydrog WATSON-CRICK C DT 1 A N3 DT 1 1_555 E DA 11 C N1 DA 11 1_555 hydrog WATSON-CRICK C DT 1 A O4 DT 1 1_555 E DA 11 C N6 DA 11 1_555 hydrog WATSON-CRICK C DC 2 A N3 DC 2 1_555 E DG 10 C N1 DG 10 1_555 hydrog WATSON-CRICK C DC 2 A N4 DC 2 1_555 E DG 10 C O6 DG 10 1_555 hydrog WATSON-CRICK C DC 2 A O2 DC 2 1_555 E DG 10 C N2 DG 10 1_555 hydrog DG-DT MISPAIR C DG 3 A N1 DG 3 1_555 E DT 8 C O4 DT 8 1_555 hydrog DG-DC PAIR C DG 3 A N2 DG 3 1_555 E DC 9 C O2 DC 9 1_555 hydrog TYPE_8_PAIR C DA 4 A N1 DA 4 1_555 E DG 7 C N1 DG 7 1_555 hydrog TYPE_8_PAIR C DA 4 A N6 DA 4 1_555 E DG 7 C O6 DG 7 1_555 hydrog DC-DC MISPAIR C DC 5 A N4 DC 5 1_555 E DC 6 C N3 DC 6 1_555 hydrog WATSON-CRICK C DG 6 A N1 DG 6 1_555 E DC 6 C N3 DC 6 1_555 hydrog WATSON-CRICK C DG 6 A N2 DG 6 1_555 E DC 6 C O2 DC 6 1_555 hydrog WATSON-CRICK C DG 6 A O6 DG 6 1_555 E DC 6 C N4 DC 6 1_555 hydrog WATSON-CRICK C DG 7 A N1 DG 7 1_555 E DC 5 C N3 DC 5 1_555 hydrog WATSON-CRICK C DG 7 A N2 DG 7 1_555 E DC 5 C O2 DC 5 1_555 hydrog WATSON-CRICK C DG 7 A O6 DG 7 1_555 E DC 5 C N4 DC 5 1_555 hydrog WATSON-CRICK C DA 8 A N1 DA 8 1_555 E DT 4 C N3 DT 4 1_555 hydrog WATSON-CRICK C DA 8 A N6 DA 8 1_555 E DT 4 C O4 DT 4 1_555 hydrog WATSON-CRICK C DT 9 A N3 DT 9 1_555 E DA 3 C N1 DA 3 1_555 hydrog WATSON-CRICK C DT 9 A O4 DT 9 1_555 E DA 3 C N6 DA 3 1_555 hydrog DC-DG PAIR C DC 10 A N4 DC 10 1_555 E DG 2 C O6 DG 2 1_555 hydrog DC-DG PAIR C DC 11 A N3 DC 11 1_555 E DG 1 C N2 DG 1 1_555 hydrog DC-DG PAIR C DC 11 A O2 DC 11 1_555 E DG 2 C N2 DG 2 1_555 hydrog WATSON-CRICK D DG 1 B N1 DG 1 1_555 E DC 21 C N3 DC 21 1_555 hydrog WATSON-CRICK D DG 1 B N2 DG 1 1_555 E DC 21 C O2 DC 21 1_555 hydrog WATSON-CRICK D DG 1 B O6 DG 1 1_555 E DC 21 C N4 DC 21 1_555 hydrog WATSON-CRICK D DC 2 B N3 DC 2 1_555 E DG 20 C N1 DG 20 1_555 hydrog WATSON-CRICK D DC 2 B N4 DC 2 1_555 E DG 20 C O6 DG 20 1_555 hydrog WATSON-CRICK D DC 2 B O2 DC 2 1_555 E DG 20 C N2 DG 20 1_555 hydrog WATSON-CRICK D DT 3 B N3 DT 3 1_555 E DA 19 C N1 DA 19 1_555 hydrog WATSON-CRICK D DT 3 B O4 DT 3 1_555 E DA 19 C N6 DA 19 1_555 hydrog WATSON-CRICK D DG 4 B N1 DG 4 1_555 E DC 18 C N3 DC 18 1_555 hydrog WATSON-CRICK D DG 4 B N2 DG 4 1_555 E DC 18 C O2 DC 18 1_555 hydrog WATSON-CRICK D DG 4 B O6 DG 4 1_555 E DC 18 C N4 DC 18 1_555 hydrog WATSON-CRICK D DA 5 B N1 DA 5 1_555 E DT 17 C N3 DT 17 1_555 hydrog WATSON-CRICK D DA 5 B N6 DA 5 1_555 E DT 17 C O4 DT 17 1_555 hydrog WATSON-CRICK D DT 6 B N3 DT 6 1_555 E DA 16 C N1 DA 16 1_555 hydrog WATSON-CRICK D DT 6 B O4 DT 6 1_555 E DA 16 C N6 DA 16 1_555 hydrog WATSON-CRICK D DG 7 B N1 DG 7 1_555 E DC 15 C N3 DC 15 1_555 hydrog WATSON-CRICK D DG 7 B N2 DG 7 1_555 E DC 15 C O2 DC 15 1_555 hydrog WATSON-CRICK D DG 7 B O6 DG 7 1_555 E DC 15 C N4 DC 15 1_555 hydrog WATSON-CRICK D DC 8 B N3 DC 8 1_555 E DG 14 C N1 DG 14 1_555 hydrog WATSON-CRICK D DC 8 B N4 DC 8 1_555 E DG 14 C O6 DG 14 1_555 hydrog WATSON-CRICK D DC 8 B O2 DC 8 1_555 E DG 14 C N2 DG 14 1_555 hydrog WATSON-CRICK D DG 9 B N1 DG 9 1_555 E DC 13 C N3 DC 13 1_555 hydrog WATSON-CRICK D DG 9 B N2 DG 9 1_555 E DC 13 C O2 DC 13 1_555 hydrog WATSON-CRICK D DG 9 B O6 DG 9 1_555 E DC 13 C N4 DC 13 1_555 DNA BINDING PROTEIN/DNA nuclease, abasic site, DNA repair, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex A VAL 247 D VAL 205 1 A PRO 248 D PRO 206 -5.47 B VAL 247 E VAL 205 1 B PRO 248 E PRO 206 -4.68 6W3U PDB 1 1 6W3U 6W3U PDB 2 1 6W3U 6W3U PDB 3 1 6W3U APEX1_HUMAN UNP 4 43 P27695 ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP SDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRL DYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 1 11 6W3U 1 11 6W3U C 1 1 11 1 10 6W3U 1 10 6W3U D 2 1 10 1 21 6W3U 1 21 6W3U E 3 1 21 43 318 6W3U 43 318 P27695 A 4 1 276 43 318 6W3U 43 318 P27695 B 4 1 276 4 ARG engineered mutation CYS 237 6W3U A P27695 UNP 237 195 5 ARG engineered mutation CYS 237 6W3U B P27695 UNP 237 195 6 6 6 6 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A HIS 116 D HIS 74 A SER 120 D SER 78 A VAL 131 D VAL 89 A SER 135 D SER 93 A ILE 91 D ILE 49 A GLN 95 D GLN 53 A LEU 62 D LEU 20 A ASN 68 D ASN 26 A ILE 312 D ILE 270 A LEU 316 D LEU 274 A LEU 295 D LEU 253 A ILE 300 D ILE 258 A LYS 141 D LYS 99 A TYR 144 D TYR 102 A VAL 157 D VAL 115 A GLU 161 D GLU 119 A VAL 166 D VAL 124 A TYR 171 D TYR 129 A LEU 205 D LEU 163 A ASP 210 D ASP 168 A ASP 283 D ASP 241 A LEU 287 D LEU 245 A ALA 250 D ALA 208 A ASP 251 D ASP 209 B HIS 116 E HIS 74 B SER 120 E SER 78 B VAL 131 E VAL 89 B SER 135 E SER 93 B ILE 91 E ILE 49 B GLN 95 E GLN 53 B LEU 62 E LEU 20 B ASN 68 E ASN 26 B ILE 312 E ILE 270 B LEU 316 E LEU 274 B LEU 295 E LEU 253 B ILE 300 E ILE 258 B LYS 141 E LYS 99 B TYR 144 E TYR 102 B VAL 157 E VAL 115 B GLU 161 E GLU 119 B VAL 166 E VAL 124 B TYR 171 E TYR 129 B LEU 205 E LEU 163 B ASP 210 E ASP 168 B ASP 283 E ASP 241 B LEU 287 E LEU 245 B ALA 250 E ALA 208 B ASP 251 E ASP 209 binding site for residue CA D 101 D CA 101 Software 2 binding site for residue EDO A 401 A EDO 401 Software 5 binding site for residue NA A 402 A NA 402 Software 6 binding site for residue CL A 403 A CL 403 Software 1 binding site for residue EDO B 401 B EDO 401 Software 2 D DG 7 B DG 7 2 1_555 D DC 8 B DC 8 2 1_555 A ALA 60 D ALA 18 5 1_555 A THR 61 D THR 19 5 1_555 A LYS 63 D LYS 21 5 1_555 A ASP 90 D ASP 48 5 1_555 A TYR 315 D TYR 273 5 1_555 A SER 66 D SER 24 6 1_555 A TRP 67 D TRP 25 6 1_555 A ASN 68 D ASN 26 6 1_555 A GLN 95 D GLN 53 6 1_555 A GLY 209 D GLY 167 6 1_555 A ASP 283 D ASP 241 6 1_555 A ASP 163 D ASP 121 1 1_555 B GLU 161 E GLU 119 2 1_555 B ARG 202 E ARG 160 2 1_555 4 P 1 21 1