0.025608 0.014785 0.000000 0.000000 0.029569 0.000000 0.000000 0.000000 0.009884 0.000000 0.000000 0.000000 Smith, M.S. Stern, K.L. Billings, W.M. Price, J.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.000 90.000 120.000 39.051 39.051 101.173 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H10 N2 O4 210.187 n PARA-NITROPHENYLALANINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N O N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N N N 65 S C N 66 N C N 67 N O N 68 N C N 69 N C N 70 N C N 71 N O N 72 N N N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 S C N 86 N C N 87 N O N 88 N C N 89 N C N 90 N C N 91 N O N 92 N O N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 N C N 105 N C N 106 N O N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 S C N 115 N C N 116 N O N 117 N C Y 118 N C Y 119 N N Y 120 N C Y 121 N C Y 122 N N N 123 N O N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N O N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N C N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N C N 167 N N N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N O N 189 N C Y 190 N C Y 191 N C Y 192 N C Y 193 N C Y 194 N C Y 195 N C N 196 N N N 197 N O N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 N C Y 214 N C Y 215 N C Y 216 N C Y 217 N N Y 218 N C Y 219 N C Y 220 N C Y 221 N C Y 222 N C N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub Y 119 N doub N 120 N sing Y 121 N sing N 122 N sing Y 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing Y 186 N doub Y 187 N sing Y 188 N sing N 189 N sing Y 190 N doub N 191 N sing Y 192 N doub N 193 N sing Y 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing Y 210 N doub Y 211 N sing Y 212 N sing N 213 N sing Y 214 N doub Y 215 N sing Y 216 N sing N 217 N sing Y 218 N sing Y 219 N doub N 220 N sing Y 221 N doub N 222 N sing Y 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing US Biochemistry BICHAW 0033 0006-2960 59 1672 1679 10.1021/acs.biochem.0c00045 32270676 Context-Dependent Stabilizing Interactions among Solvent-Exposed Residues along the Surface of a Trimeric Helix Bundle. 2020 10.2210/pdb6ov9/pdb pdb_00006ov9 100 1 N CCD 2017-05-26 APEX II CCD SINGLE WAVELENGTH M x-ray 1 1.5406 1.0 1.5406 ROTATING ANODE ENRAF-NONIUS FR591 3945.472 Coiled-coil Trimer with Glu:p-nitrophenylalanine:Lys Triad 2 syn polymer 18.015 water 30 nat water no yes (ACE)EVEALEKKVEALE(PPN)KVQKLEKKVEALEHGWDGR XEVEALEKKVEALEFKVQKLEKKVEALEHGWDGR A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.79 31.44 VAPOR DIFFUSION, SITTING DROP 40% PEG300, 100 mM sodium phosphate dibasic/citric acid, pH 4.2 298 citation chem_comp_atom chem_comp_bond database_2 pdbx_entry_details pdbx_modification_feature repository Initial release Database references Data collection Database references Structure summary 1 0 2020-04-29 1 1 2020-05-20 1 2 2025-04-02 _citation.journal_volume _citation.page_first _citation.page_last _citation.title _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_entry_details.has_protein_modification United States National Institutes of Health/Office of the Director R15 GM116055-01 N RCSB Y RCSB 2019-05-07 REL REL HOH water 32630 synthetic construct sample 1 34 N Y A PPN 14 Named protein modification A PPN 15 PHE PPN 1 1_555 Nitration B PPN 14 Named protein modification B PPN 15 PHE PPN 1 1_555 Nitration A ACE 0 Terminal acetylation A ACE 1 A GLU 1 GLU A GLU 2 1_555 ACE 10 1_555 None B ACE 0 Terminal acetylation B ACE 1 B GLU 1 GLU B GLU 2 1_555 ACE 10 1_555 None HOH 14 2 HOH HOH 101 A HOH 23 2 HOH HOH 102 A HOH 3 2 HOH HOH 103 A HOH 5 2 HOH HOH 104 A HOH 27 2 HOH HOH 105 A HOH 6 2 HOH HOH 106 A HOH 4 2 HOH HOH 107 A HOH 19 2 HOH HOH 108 A HOH 12 2 HOH HOH 109 A HOH 1 2 HOH HOH 110 A HOH 29 2 HOH HOH 111 A HOH 11 2 HOH HOH 112 A HOH 30 2 HOH HOH 113 A HOH 26 2 HOH HOH 101 B HOH 7 2 HOH HOH 102 B HOH 25 2 HOH HOH 103 B HOH 10 2 HOH HOH 104 B HOH 28 2 HOH HOH 105 B HOH 20 2 HOH HOH 106 B HOH 9 2 HOH HOH 107 B HOH 21 2 HOH HOH 108 B HOH 2 2 HOH HOH 109 B HOH 15 2 HOH HOH 110 B HOH 18 2 HOH HOH 111 B HOH 22 2 HOH HOH 112 B HOH 13 2 HOH HOH 113 B HOH 8 2 HOH HOH 114 B HOH 16 2 HOH HOH 115 B HOH 24 2 HOH HOH 116 B HOH 17 2 HOH HOH 117 B ACE 0 n 1 ACE 0 A GLU 1 n 2 GLU 1 A VAL 2 n 3 VAL 2 A GLU 3 n 4 GLU 3 A ALA 4 n 5 ALA 4 A LEU 5 n 6 LEU 5 A GLU 6 n 7 GLU 6 A LYS 7 n 8 LYS 7 A LYS 8 n 9 LYS 8 A VAL 9 n 10 VAL 9 A GLU 10 n 11 GLU 10 A ALA 11 n 12 ALA 11 A LEU 12 n 13 LEU 12 A GLU 13 n 14 GLU 13 A PNF 14 n 15 PPN 14 A LYS 15 n 16 LYS 15 A VAL 16 n 17 VAL 16 A GLN 17 n 18 GLN 17 A LYS 18 n 19 LYS 18 A LEU 19 n 20 LEU 19 A GLU 20 n 21 GLU 20 A LYS 21 n 22 LYS 21 A LYS 22 n 23 LYS 22 A VAL 23 n 24 VAL 23 A GLU 24 n 25 GLU 24 A ALA 25 n 26 ALA 25 A LEU 26 n 27 LEU 26 A GLU 27 n 28 GLU 27 A HIS 28 n 29 HIS 28 A GLY 29 n 30 GLY 29 A TRP 30 n 31 TRP 30 A ASP 31 n 32 ASP 31 A GLY 32 n 33 GLY 32 A ARG 33 n 34 ARG 33 A ACE 0 n 1 ACE 0 B GLU 1 n 2 GLU 1 B VAL 2 n 3 VAL 2 B GLU 3 n 4 GLU 3 B ALA 4 n 5 ALA 4 B LEU 5 n 6 LEU 5 B GLU 6 n 7 GLU 6 B LYS 7 n 8 LYS 7 B LYS 8 n 9 LYS 8 B VAL 9 n 10 VAL 9 B GLU 10 n 11 GLU 10 B ALA 11 n 12 ALA 11 B LEU 12 n 13 LEU 12 B GLU 13 n 14 GLU 13 B PNF 14 n 15 PPN 14 B LYS 15 n 16 LYS 15 B VAL 16 n 17 VAL 16 B GLN 17 n 18 GLN 17 B LYS 18 n 19 LYS 18 B LEU 19 n 20 LEU 19 B GLU 20 n 21 GLU 20 B LYS 21 n 22 LYS 21 B LYS 22 n 23 LYS 22 B VAL 23 n 24 VAL 23 B GLU 24 n 25 GLU 24 B ALA 25 n 26 ALA 25 B LEU 26 n 27 LEU 26 B GLU 27 n 28 GLU 27 B HIS 28 n 29 HIS 28 B GLY 29 n 30 GLY 29 B TRP 30 n 31 TRP 30 B ASP 31 n 32 ASP 31 B GLY 32 n 33 GLY 32 B ARG 33 n 34 ARG 33 B author_and_software_defined_assembly PISA 3 trimeric author_and_software_defined_assembly PISA 3 trimeric Size Exclusion Chromatography gel filtration 3750 -31 6670 3710 -34 6780 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_545 -y,x-y-1,z crystal symmetry operation 19.5255000000 -33.8191580432 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_655 -x+y+1,-x,z crystal symmetry operation 39.0510000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A A OE1 O GLU HOH 13 101 2.07 1 A PPN 14 11.73 1 A A O O HOH HOH 103 106 2.16 1_555 2_545 49.400 27.5204 11.660 0.2701 0.2095 0.2162 2.1000 16.8980 710 6678 10.6300 99.3800 0.2200 1 THROUGHOUT 1.970 MOLECULAR REPLACEMENT 30.9700 0.9000 1.1100 2.1000 16.8980 30 586 31.05 0 0 556 68 0.2781 0.0000 0.2095 2.2619 139 1183 1322 5 98.0000 0.2749 0.0000 0.1998 2.4889 128 1173 1301 5 99.0000 0.2635 0.0000 0.2137 2.8476 166 1200 1366 5 100.0000 0.3006 0.0000 0.1984 3.5820 120 1224 1344 5 100.0000 0.2542 0.0000 0.2186 16.8982 157 1188 1345 5 100.0000 2.1 16.9 6OV9 7199 0.903 0.220 0.062 0.229 1 10.7 10.9 99.76 0.626 2.1 2.175 333 0.841 0.272 0.684 1 6.2 100 refinement PHENIX dev_2906 data extraction PDB_EXTRACT 3.25 data reduction PROTEUM PLUS data scaling PROTEUM PLUS phasing PHENIX N Coiled-coil Trimer with Glu:p-nitrophenylalanine:Lys Triad 1 N N 1 N N 2 N N 2 N N A GLU 1 A GLU 2 HELX_P A GLY 29 A GLY 30 1 AA1 29 A TRP 30 A TRP 31 HELX_P A ARG 33 A ARG 34 5 AA2 4 B GLU 1 B GLU 2 HELX_P B GLY 29 B GLY 30 1 AA3 29 B TRP 30 B TRP 31 HELX_P B ARG 33 B ARG 34 5 AA4 4 covale 1.332 both A ACE 0 A C ACE 1 1_555 A GLU 1 A N GLU 2 1_555 covale 1.330 both A GLU 13 A C GLU 14 1_555 A PPN 14 A N PPN 15 1_555 covale 1.327 both A PPN 14 A C PPN 15 1_555 A LYS 15 A N LYS 16 1_555 covale 1.321 both B ACE 0 B C ACE 1 1_555 B GLU 1 B N GLU 2 1_555 covale 1.328 both B GLU 13 B C GLU 14 1_555 B PPN 14 B N PPN 15 1_555 covale 1.329 both B PPN 14 B C PPN 15 1_555 B LYS 15 B N LYS 16 1_555 DE NOVO PROTEIN Trimer, Helix, DE NOVO PROTEIN 6OV9 PDB 1 1 6OV9 0 33 6OV9 0 33 6OV9 A 1 1 34 0 33 6OV9 0 33 6OV9 B 1 1 34 146 H 3