4.43 12.845 2.557 3.438 A N ASN 312 ATOM A N ASN 1 1 1.00 1 N 2.56 11.573 1.795 3.262 A CA ASN 312 ATOM A CA ASN 1 1 1.00 1 C 2.97 10.471 2.711 2.786 A C ASN 312 ATOM A C ASN 1 1 1.00 1 C 2.25 10.742 3.827 2.365 A O ASN 312 ATOM A O ASN 1 1 1.00 1 O 3.07 11.171 1.016 4.536 A CB ASN 312 ATOM A CB ASN 1 1 1.00 1 C 2.97 10.780 1.898 5.708 A CG ASN 312 ATOM A CG ASN 1 1 1.00 1 C 2.97 10.751 3.120 5.632 A OD1 ASN 312 ATOM A OD1 ASN 1 1 1.00 1 O 3.48 10.454 1.252 6.803 A ND2 ASN 312 ATOM A ND2 ASN 1 1 1.00 1 N 52.60 13.468 2.222 2.898 A H1 ASN 312 ATOM A H1 ASN 1 1 0.51 1 H 13.53 12.709 3.413 3.238 A H2 ASN 312 ATOM A H2 ASN 1 1 1.00 1 H 170.86 13.117 2.488 4.283 A H3 ASN 312 ATOM A H3 ASN 1 1 0.12 1 H 1.52 11.719 1.147 2.559 A HA ASN 312 ATOM A HA ASN 1 1 0.83 1 H 3.68 10.412 0.444 4.331 A HB2 ASN 312 ATOM A HB2 ASN 1 1 1.00 1 H 3.22 11.922 0.471 4.818 A HB3 ASN 312 ATOM A HB3 ASN 1 1 0.78 1 H 10.51 10.487 0.392 6.812 A HD22 ASN 312 ATOM A HD22 ASN 1 1 1.00 1 H 3.44 9.235 2.218 2.782 A N PHE 313 ATOM A N PHE 1 2 1.00 1 N 3.12 8.123 3.117 2.535 A CA PHE 313 ATOM A CA PHE 1 2 1.00 1 C 2.62 7.734 3.805 3.829 A C PHE 313 ATOM A C PHE 1 2 1.00 1 C 3.19 7.795 5.029 3.928 A O PHE 313 ATOM A O PHE 1 2 1.00 1 O 3.47 6.938 2.400 1.895 A CB PHE 313 ATOM A CB PHE 1 2 1.00 1 C 4.70 5.906 3.340 1.374 A CG PHE 313 ATOM A CG PHE 1 2 1.00 1 C 5.86 6.003 3.836 0.096 A CD1 PHE 313 ATOM A CD1 PHE 1 2 1.00 1 C 7.22 4.862 3.768 2.174 A CD2 PHE 313 ATOM A CD2 PHE 1 2 1.00 1 C 6.40 5.064 4.721 -0.392 A CE1 PHE 313 ATOM A CE1 PHE 1 2 1.00 1 C 8.18 3.922 4.658 1.692 A CE2 PHE 313 ATOM A CE2 PHE 1 2 1.00 1 C 7.02 4.026 5.133 0.402 A CZ PHE 313 ATOM A CZ PHE 1 2 1.00 1 C 4.95 9.021 1.395 2.916 A H PHE 313 ATOM A H PHE 1 2 1.00 1 H 2.02 8.407 3.807 1.918 A HA PHE 313 ATOM A HA PHE 1 2 0.76 1 H 1.86 6.518 1.829 2.556 A HB3 PHE 313 ATOM A HB3 PHE 1 2 0.89 1 H 7.21 6.704 3.563 -0.451 A HD1 PHE 313 ATOM A HD1 PHE 1 2 0.56 1 H 105.75 4.789 3.449 3.044 A HD2 PHE 313 ATOM A HD2 PHE 1 2 1.00 1 H 42.48 5.137 5.042 -1.262 A HE1 PHE 313 ATOM A HE1 PHE 1 2 1.00 1 H 85.96 3.218 4.931 2.236 A HE2 PHE 313 ATOM A HE2 PHE 1 2 0.00 1 H 12.47 3.394 5.731 0.070 A HZ PHE 313 ATOM A HZ PHE 1 2 0.73 1 H 2.45 7.408 3.044 4.851 A N GLY 314 ATOM A N GLY 1 3 1.00 1 N 3.11 7.275 3.664 6.133 A CA GLY 314 ATOM A CA GLY 1 3 1.00 1 C 2.26 6.419 2.877 7.061 A C GLY 314 ATOM A C GLY 1 3 1.00 1 C 2.67 6.297 1.666 6.961 A O GLY 314 ATOM A O GLY 1 3 1.00 1 O 5.70 8.154 3.764 6.529 A HA2 GLY 314 ATOM A HA2 GLY 1 3 0.89 1 H 120.76 6.883 4.536 6.020 A HA3 GLY 314 ATOM A HA3 GLY 1 3 1.00 1 H 2.39 5.803 3.594 7.975 A N TPO 315 HETATM A N TPO 1 4 1.00 1 N 2.13 5.181 2.973 9.103 A CA TPO 315 HETATM A CA TPO 1 4 1.00 1 C 2.35 6.131 3.012 10.292 A CB TPO 315 HETATM A CB TPO 1 4 1.00 1 C 3.60 5.481 2.535 11.587 A CG2 TPO 315 HETATM A CG2 TPO 1 4 1.00 1 C 2.68 7.150 2.084 9.950 A OG1 TPO 315 HETATM A OG1 TPO 1 4 1.00 1 O 2.79 8.647 2.648 10.020 A P TPO 315 HETATM A P TPO 1 4 1.00 1 P 3.38 9.596 1.446 9.603 A O1P TPO 315 HETATM A O1P TPO 1 4 1.00 1 O 3.46 8.821 3.730 9.007 A O2P TPO 315 HETATM A O2P TPO 1 4 1.00 1 O 2.79 9.014 3.185 11.454 A O3P TPO 315 HETATM A O3P TPO 1 4 1.00 1 O 2.52 3.883 3.676 9.408 A C TPO 315 HETATM A C TPO 1 4 1.00 1 C 2.17 3.812 4.888 9.465 A O TPO 315 HETATM A O TPO 1 4 1.00 1 O 17.81 5.683 4.684 7.900 A H TPO 315 HETATM A H TPO 1 4 1.00 1 H 0.08 4.981 2.041 8.884 A HA TPO 315 HETATM A HA TPO 1 4 0.90 1 H 25.49 5.733 3.232 12.385 A HG21 TPO 315 HETATM A HG21 TPO 1 4 1.00 1 H 16.05 5.879 1.552 11.836 A HG22 TPO 315 HETATM A HG22 TPO 1 4 0.87 1 H 7.61 4.399 2.465 11.507 A HG23 TPO 315 HETATM A HG23 TPO 1 4 0.82 1 H 1.84 9.043 4.774 9.355 A HOP2 TPO 315 HETATM A HOP2 TPO 1 4 1.00 1 H 3.18 2.846 2.878 9.583 A N PHE 316 ATOM A N PHE 1 5 1.00 1 N 3.55 1.565 3.379 10.020 A CA PHE 316 ATOM A CA PHE 1 5 1.00 1 C 3.16 1.308 2.781 11.382 A C PHE 316 ATOM A C PHE 1 5 1.00 1 C 3.31 1.321 1.571 11.547 A O PHE 316 ATOM A O PHE 1 5 1.00 1 O 5.05 0.502 2.911 9.038 A CB PHE 316 ATOM A CB PHE 1 5 1.00 1 C 7.31 -0.878 3.415 9.328 A CG PHE 316 ATOM A CG PHE 1 5 1.00 1 C 8.89 -1.110 4.440 10.222 A CD1 PHE 316 ATOM A CD1 PHE 1 5 1.00 1 C 9.55 -1.959 2.847 8.679 A CD2 PHE 316 ATOM A CD2 PHE 1 5 1.00 1 C 10.84 -2.397 4.877 10.464 A CE1 PHE 316 ATOM A CE1 PHE 1 5 1.00 1 C 10.86 -3.241 3.281 8.912 A CE2 PHE 316 ATOM A CE2 PHE 1 5 1.00 1 C 9.09 -3.464 4.291 9.811 A CZ PHE 316 ATOM A CZ PHE 1 5 1.00 1 C 13.00 2.864 2.027 9.454 A H PHE 316 ATOM A H PHE 1 5 1.00 1 H 4.01 1.569 4.348 10.079 A HA PHE 316 ATOM A HA PHE 1 5 1.00 1 H 3.45 0.472 1.939 9.043 A HB3 PHE 316 ATOM A HB3 PHE 1 5 1.00 1 H 153.69 -0.399 4.836 10.672 A HD1 PHE 316 ATOM A HD1 PHE 1 5 1.00 1 H 58.96 -1.815 2.158 8.073 A HD2 PHE 316 ATOM A HD2 PHE 1 5 0.92 1 H 85.49 -2.546 5.565 11.071 A HE1 PHE 316 ATOM A HE1 PHE 1 5 0.00 1 H 43.71 -3.956 2.884 8.469 A HE2 PHE 316 ATOM A HE2 PHE 1 5 1.00 1 H 7.08 -4.329 4.590 9.971 A HZ PHE 316 ATOM A HZ PHE 1 5 0.00 1 H 4.36 1.076 3.619 12.366 A N SER 317 ATOM A N SER 1 6 1.00 1 N 5.97 0.815 3.144 13.704 A CA SER 317 ATOM A CA SER 1 6 1.00 1 C 6.06 -0.344 3.944 14.255 A C SER 317 ATOM A C SER 1 6 1.00 1 C 5.98 -0.818 4.888 13.654 A O SER 317 ATOM A O SER 1 6 1.00 1 O 8.74 2.093 3.289 14.574 A CB SER 317 ATOM A CB SER 1 6 1.00 1 C 9.51 2.292 4.575 14.897 A OG SER 317 ATOM A OG SER 1 6 1.00 1 O 5.61 -0.738 3.695 15.404 A OXT SER 317 ATOM A OXT SER 1 6 1.00 1 O 80.72 1.064 4.475 12.285 A H SER 317 ATOM A H SER 1 6 0.00 1 H 7.32 0.559 2.198 13.676 A HA SER 317 ATOM A HA SER 1 6 0.91 1 H 61.56 1.986 2.770 15.386 A HB2 SER 317 ATOM A HB2 SER 1 6 0.00 1 H 13.83 2.857 2.967 14.071 A HB3 SER 317 ATOM A HB3 SER 1 6 1.00 1 H 12.54 1.656 4.856 15.333 A HG SER 317 ATOM A HG SER 1 6 0.29 1 H 3.07 9.493 1.845 13.535 A O HOH 401 HETATM B O HOH 2 1.00 1 O 0.0676 -0.0063 0.0282 0.0422 -0.0143 0.0583 A N ASN 312 A N ASN 1 N 0.0515 0.0043 0.0114 0.0180 0.0006 0.0278 A CA ASN 312 A CA ASN 1 C 0.0558 0.0015 0.0047 0.0399 -0.0013 0.0171 A C ASN 312 A C ASN 1 C 0.0519 -0.0006 0.0030 0.0173 -0.0011 0.0162 A O ASN 312 A O ASN 1 O 0.0462 -0.0031 0.0056 0.0436 -0.0012 0.0267 A CB ASN 312 A CB ASN 1 C 0.0601 -0.0077 0.0032 0.0274 0.0072 0.0253 A CG ASN 312 A CG ASN 1 C 0.0617 0.0007 -0.0004 0.0208 -0.0062 0.0302 A OD1 ASN 312 A OD1 ASN 1 O 0.0589 -0.0077 0.0055 0.0364 0.0027 0.0369 A ND2 ASN 312 A ND2 ASN 1 N 0.0588 0.0010 0.0023 0.0473 -0.0037 0.0246 A N PHE 313 A N PHE 2 N 0.0617 -0.0041 0.0055 0.0284 -0.0057 0.0286 A CA PHE 313 A CA PHE 2 C 0.0587 0.0056 0.0023 0.0189 -0.0018 0.0221 A C PHE 313 A C PHE 2 C 0.0734 -0.0109 0.0010 0.0248 -0.0018 0.0232 A O PHE 313 A O PHE 2 O 0.0604 0.0010 0.0033 0.0200 0.0088 0.0513 A CB PHE 313 A CB PHE 2 C 0.0788 0.0046 -0.0019 0.0377 0.0245 0.0622 A CG PHE 313 A CG PHE 2 C 0.0864 0.0124 -0.0122 0.0631 0.0346 0.0733 A CD1 PHE 313 A CD1 PHE 2 C 0.0995 0.0107 -0.0110 0.0761 0.0453 0.0988 A CD2 PHE 313 A CD2 PHE 2 C 0.0949 -0.0029 -0.0097 0.0600 0.0393 0.0883 A CE1 PHE 313 A CE1 PHE 2 C 0.1066 0.0198 -0.0094 0.0931 0.0339 0.1112 A CE2 PHE 313 A CE2 PHE 2 C 0.1000 0.0041 -0.0145 0.0629 0.0411 0.1037 A CZ PHE 313 A CZ PHE 2 C 0.0493 0.0033 0.0057 0.0162 -0.0027 0.0277 A N GLY 314 A N GLY 3 N 0.0601 -0.0062 0.0064 0.0214 0.0059 0.0365 A CA GLY 314 A CA GLY 3 C 0.0532 -0.0036 0.0042 0.0162 -0.0003 0.0166 A C GLY 314 A C GLY 3 C 0.0542 0.0174 0.0072 0.0268 0.0034 0.0206 A O GLY 314 A O GLY 3 O 0.0490 -0.0031 0.0022 0.0265 -0.0021 0.0152 A N TPO 315 A N TPO 4 N 0.0461 0.0090 -0.0007 0.0202 0.0003 0.0146 A CA TPO 315 A CA TPO 4 C 0.0421 0.0054 -0.0055 0.0266 0.0076 0.0206 A CB TPO 315 A CB TPO 4 C 0.0581 0.0177 -0.0069 0.0321 0.0080 0.0464 A CG2 TPO 315 A CG2 TPO 4 C 0.0539 0.0032 -0.0053 0.0302 -0.0041 0.0178 A OG1 TPO 315 A OG1 TPO 4 O 0.0578 0.0007 0.0014 0.0304 0.0036 0.0178 A P TPO 315 A P TPO 4 P 0.0644 -0.0050 -0.0031 0.0450 0.0025 0.0192 A O1P TPO 315 A O1P TPO 4 O 0.0752 -0.0068 0.0034 0.0341 0.0022 0.0222 A O2P TPO 315 A O2P TPO 4 O 0.0588 0.0060 0.0063 0.0287 0.0009 0.0185 A O3P TPO 315 A O3P TPO 4 O 0.0501 0.0006 -0.0037 0.0264 0.0068 0.0194 A C TPO 315 A C TPO 4 C 0.0440 0.0035 -0.0009 0.0141 0.0017 0.0243 A O TPO 315 A O TPO 4 O 0.0522 -0.0195 -0.0122 0.0353 0.0123 0.0333 A N PHE 316 A N PHE 5 N 0.0672 -0.0086 -0.0053 0.0254 0.0010 0.0424 A CA PHE 316 A CA PHE 5 C 0.0690 -0.0087 0.0053 0.0220 -0.0024 0.0289 A C PHE 316 A C PHE 5 C 0.0632 0.0028 0.0105 0.0379 -0.0074 0.0247 A O PHE 316 A O PHE 5 O 0.0706 0.0038 -0.0084 0.0640 -0.0286 0.0573 A CB PHE 316 A CB PHE 5 C 0.1020 0.0154 -0.0100 0.0834 -0.0489 0.0924 A CG PHE 316 A CG PHE 5 C 0.1207 0.0321 -0.0156 0.0971 -0.0556 0.1199 A CD1 PHE 316 A CD1 PHE 5 C 0.1231 0.0072 -0.0099 0.1210 -0.0695 0.1188 A CD2 PHE 316 A CD2 PHE 5 C 0.1259 0.0356 -0.0193 0.1577 -0.0685 0.1281 A CE1 PHE 316 A CE1 PHE 5 C 0.1359 0.0173 -0.0160 0.1423 -0.0798 0.1346 A CE2 PHE 316 A CE2 PHE 5 C 0.1183 0.0299 -0.0147 0.1065 -0.0611 0.1206 A CZ PHE 316 A CZ PHE 5 C 0.0851 -0.0089 0.0086 0.0257 -0.0012 0.0547 A N SER 317 A N SER 6 N 0.0984 -0.0149 0.0061 0.0641 0.0004 0.0645 A CA SER 317 A CA SER 6 C 0.1062 -0.0048 -0.0035 0.0875 -0.0003 0.0365 A C SER 317 A C SER 6 C 0.1154 0.0131 -0.0039 0.0747 -0.0009 0.0372 A O SER 317 A O SER 6 O 0.1173 0.0043 0.0070 0.1125 -0.0104 0.1023 A CB SER 317 A CB SER 6 C 0.1267 0.0018 -0.0002 0.1213 -0.0276 0.1132 A OG SER 317 A OG SER 6 O 0.0968 -0.0108 -0.0075 0.0869 -0.0043 0.0296 A OXT SER 317 A OXT SER 6 O 0.0503 0.0068 0.0059 0.0447 -0.0102 0.0218 A O HOH 401 B O HOH O 0.042283 0.000000 0.000000 0.000000 0.211864 0.000000 0.000000 0.000000 0.033267 0.000000 0.000000 0.000000 Guenther, E.L. Cao, Q. Boyer, D.R. Sawaya, M.R. Eisenberg, D.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 23.650 4.720 30.060 C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H10 N O6 P 199.099 n PHOSPHOTHREONINE PHOSPHONOTHREONINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N N N 9 N O N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 N C N 20 N C N 21 N O N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N O N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C Y 36 N C Y 37 N C Y 38 N C Y 39 N C Y 40 N C Y 41 N C N 42 N O N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N N N 55 S C N 56 N C N 57 N O N 58 N C N 59 N O N 60 N O N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N N N 69 S C N 70 R C N 71 N C N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 N O N 79 N O N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing Y 39 N doub Y 40 N sing Y 41 N sing N 42 N sing Y 43 N doub N 44 N sing Y 45 N doub N 46 N sing Y 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing US Nat. Struct. Mol. Biol. 1545-9985 25 463 471 10.1038/s41594-018-0064-2 29786080 Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation. 2018 10.2210/pdb6cf4/pdb pdb_00006cf4 100 1 CMOS 2018-01-09 TVIPS F416 CMOS CAMERA 0.0251 1.0 0.0251 TRANSMISSION ELECTRON MICROSCOPE TECNAI F20 TEM 90.00 90.00 90.00 23.650 4.720 30.060 P 21 21 21 19 19.6 OTHER RECIPROCAL maximum likihood Density map was obtained using measured diffraction intensities and phases acquired from a crystallographic direct methods program, shelxd. 6CF4 DIFFRACTION PATTERN/LAYERLINES 3D CRYSTAL REL 2018-02-13 RCSB 2024-11-06 2018-05-23 Segment NFGTFS, with familial mutation A315T and phosphorylated threonine, from the low complexity domain of TDP-43, residues 312-317 4 air, sealed chamber Crystals were prepared by shaking peptide in microcentrifuge tube at 37 deg Celsius for 4 days. microcentrifuge tube none 1 310 4 DAY 1 NONE 819 1 1 85 7.65 1.08 3.6 1300 20.96 1 88 1.08 0.86 3.9 1241 37.03 1 88 0.86 0.75 3.9 1209 39.38 86.6 0.75 1 15891 4177 32.2 32.2 0 17.2 17.2 1 crystal of NFGTFS phosphorylated on threonine. 0 NATURAL COMPLEX NO 9606 Homo sapiens 3D ARRAY 1 1 CRYSTALLOGRAPHY 3 0.01 The detector was operated in rolling shutter mode with 2X2 pixel binning. TVIPS TEMCAM-F416 (4k x 4k) 100 1 4096 4096 6CF4 200 BASIC NITROGEN FIELD EMISSION GUN FLOOD BEAM FEI TECNAI F20 DIFFRACTION 100 100 GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER 1 COPPER 300 Quantifoil R2/2 IMAGE ACQUISITION 1 EM-Menu MASKING CTF CORRECTION 1 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING 1 Coot OTHER MOLECULAR REPLACEMENT 1 LATTICE DISTORTION CORRECTION 1 SYMMETRY DETERMINATION 1 CRYSTALLOGRAPHY MERGING 1 RECONSTRUCTION direct methods 1 SHELXD 2013/2 MODEL REFINEMENT 1 PHENIX NO NO NO YES ETHANE 6CF4 FEI VITROBOT MARK IV 751.679 NFGTFS 1 syn polymer 18.015 water 1 nat water no yes NFG(TPO)FS NFGTFS A polypeptide(L) n n n n n n Batch 7.5 1X PBS 7.5 310 citation citation_author citation pdbx_audit_support diffrn_detector chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature repository Initial release Data collection Database references Data collection Database references Author supporting evidence Data collection Data collection Database references Structure summary 1 0 2018-05-23 1 1 2018-06-06 1 2 2018-06-13 1 3 2019-12-18 1 4 2021-06-30 1 5 2024-11-06 _citation.journal_abbrev _citation.pdbx_database_id_PubMed _citation.title _citation.journal_volume _citation.page_first _citation.page_last _pdbx_audit_support.funding_organization _diffrn_detector.detector _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update United States National Institutes of Health/National Institute on Aging (NIH/NIA) AG029430 Segment NFGTFS, with familial mutation A315T and phosphorylated threonine, from the low complexity domain of TDP-43, residues 312-317 N RCSB Y RCSB 2018-02-13 REL REL HOH water Synthetic peptide NFGpTFS corresponding tosegment 312-317 of TDP-43, with phosphorylated threonine 9606 Homo sapiens sample 1 6 Y A TPO 315 Named protein modification A TPO 4 THR TPO 1 1_555 Phosphorylation HOH 1 2 HOH HOH 401 A ASN 312 n 1 ASN 312 A PHE 313 n 2 PHE 313 A GLY 314 n 3 GLY 314 A TPO 315 n 4 TPO 315 A PHE 316 n 5 PHE 316 A SER 317 n 6 SER 317 A author_defined_assembly 10 decameric none 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_565 x,y+1,z crystal symmetry operation 0.0000000000 4.7200000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_575 x,y+2,z crystal symmetry operation 0.0000000000 9.4400000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_545 x,y-1,z crystal symmetry operation 0.0000000000 -4.7200000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_535 x,y-2,z crystal symmetry operation 0.0000000000 -9.4400000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_565 -x,y+3/2,-z+1/2 crystal symmetry operation 0.0000000000 7.0800000000 15.0300000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y+1/2,-z+1/2 crystal symmetry operation 0.0000000000 2.3600000000 15.0300000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_545 -x,y-1/2,-z+1/2 crystal symmetry operation 0.0000000000 -2.3600000000 15.0300000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_535 -x,y-3/2,-z+1/2 crystal symmetry operation 0.0000000000 -7.0800000000 15.0300000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_525 -x,y-5/2,-z+1/2 crystal symmetry operation 0.0000000000 -11.8000000000 15.0300000000 1 A A O1P HOP2 TPO TPO 315 315 1.52 1_555 1_545 170.860 12.1080 0.000 0.2512 0.2324 0.2346 0.7500 7.6450 428 4178 10.2400 86.7700 0.1100 1 THROUGHOUT 1.380 30.2100 0.9000 1.1100 0.7500 7.6450 1 53 3.07 0 0 52 6 0.021 53 2.042 72 0.110 6 0.008 9 32.500 16 0.4023 0.0000 0.3819 0.8588 139 1209 1348 3 88.0000 0.2774 0.0000 0.2828 1.0815 137 1241 1378 3 88.0000 0.2098 0.0000 0.1861 7.6450 152 1300 1452 3 85.0000 40.550 0.750 7.645 6CF4 4177 0.989 0.172 0.203 0.958 1 3.900 15891 3.804 86.600 0.661 0.750 0.770 1.280 1259 360 314 0.599 0.757 1 4.010 87.200 0.668 0.770 0.790 1.430 1271 352 310 0.533 0.770 1 4.100 88.100 0.656 0.790 0.810 1.350 974 306 268 0.474 0.772 1 3.634 87.600 0.633 0.810 0.840 1.530 1019 301 265 0.625 0.730 1 3.845 88.000 0.559 0.840 0.870 1.830 1032 303 263 0.646 0.645 1 3.924 86.800 0.420 0.870 0.900 2.580 1082 305 268 0.788 0.484 1 4.037 87.900 0.302 0.900 0.930 3.480 1146 306 270 0.903 0.341 1 4.244 88.200 0.304 0.930 0.970 3.360 901 277 244 0.864 0.353 1 3.693 88.100 0.341 0.970 1.010 3.370 808 258 224 0.832 0.405 1 3.607 86.800 0.273 1.010 1.060 4.480 835 251 218 0.872 0.320 1 3.830 86.900 0.214 1.060 1.120 5.190 912 259 227 0.969 0.247 1 4.018 87.600 0.213 1.120 1.190 5.710 915 253 222 0.953 0.248 1 4.122 87.700 0.177 1.190 1.270 5.610 593 208 175 0.958 0.211 1 3.389 84.100 0.200 1.270 1.370 5.480 597 204 178 0.942 0.239 1 3.354 87.300 0.184 1.370 1.500 6.700 688 207 177 0.929 0.216 1 3.887 85.500 0.151 1.500 1.680 7.210 573 179 156 0.929 0.181 1 3.673 87.200 0.143 1.680 1.940 7.090 382 152 127 0.929 0.174 1 3.008 83.600 0.129 1.940 2.370 8.650 505 161 134 0.976 0.150 1 3.769 83.200 0.082 2.370 3.360 8.710 239 102 82 0.983 0.102 1 2.915 80.400 0.068 3.360 7.645 9.550 160 78 55 0.991 0.082 1 2.909 70.500 data reduction Wolfgang Kabsch Wolfgang.Kabsch@mpimf-heidelberg.mpg.de http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ XDS package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package data extraction PDB deposit@deposit.rcsb.org Sep. 1, 2017 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.24 N Segment NFGTFS, with familial mutation A315T and phosphorylated threonine, from the low complexity domain of TDP-43, residues 312-317 1 N N 2 N N covale 1.315 both A GLY 314 A C GLY 3 1_555 A TPO 315 A N TPO 4 1_555 covale 1.320 both A TPO 315 A C TPO 4 1_555 A PHE 316 A N PHE 5 1_555 PROTEIN FIBRIL Amyloid, LARKS, Reversible aggregation, PROTEIN FIBRIL 6CF4 PDB 1 1 6CF4 312 317 6CF4 312 317 6CF4 A 1 1 6 19 P 21 21 21