1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Dwivedi, R. Aggarwal, P. Kaur, K.J. Bhavesh, N.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N N N 29 S C N 30 N C N 31 N O N 32 S C N 33 N C N 34 N C N 35 N C N 36 N O N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N N N 51 S C N 52 N C N 53 N O N 54 N C N 55 N C N 56 N C N 57 N C N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N N N 73 S C N 74 N C N 75 N O N 76 N C N 77 N C N 78 N C N 79 N C N 80 N N N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 N H N 99 N H N 100 N N N 101 S C N 102 N C N 103 N O N 104 N C N 105 N C N 106 N C N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 R C N 122 N O N 123 N C N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 S C N 136 N C N 137 N O N 138 N C Y 139 N C Y 140 N C Y 141 N C Y 142 N N Y 143 N C Y 144 N C Y 145 N C Y 146 N C Y 147 N C N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing Y 139 N doub Y 140 N sing Y 141 N sing N 142 N sing Y 143 N doub Y 144 N sing Y 145 N sing N 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N doub N 151 N sing Y 152 N sing N 153 N sing N 154 N sing N 155 N sing AT Amino Acids 1438-2199 51 1443 1460 10.1007/s00726-019-02779-2 31485742 Design of therapeutically improved analogue of the antimicrobial peptide, indolicidin, using a glycosylation strategy. 2019 0000-0002-5710-0622 10.2210/pdb5zvf/pdb pdb_00005zvf 10.13018/BMR36189 Antimicrobial peptide and derivative of Indolicidin 1855.258 non glycosylated analogue of Indolicidin 1 syn polymer no yes ILPWKWKWTPWRR(NH2) ILPWKWKWTPWRRX A polypeptide(L) n n n n n n n n n n n n n n citation citation_author pdbx_nmr_spectrometer database_2 pdbx_database_status chem_comp_atom chem_comp_bond database_2 pdbx_entry_details pdbx_modification_feature repository Initial release Data collection Database references Database references Other Data collection Database references Structure summary 1 0 2019-06-19 1 1 2019-12-11 1 2 2023-06-14 1 3 2024-11-20 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation_author.identifier_ORCID _citation_author.name _pdbx_nmr_spectrometer.model _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _database_2.pdbx_DOI India DST SR/S1/OC-63/2012 Structure of indW9TP7K, a non glycosylated analogue of indolicidin N PDBJ Y PDBJ 2018-05-10 REL REL REL REL 9913 Bos taurus sample 1 13 Y A NH2 14 Terminal amidation A NH2 14 A ARG 13 ARG A ARG 13 1_555 NH2 8 1_555 None structures with the lowest energy 100 20 isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-1H TOCSY 2 mM natural abundance 0.03 0.001 mM 1 4.7 0.05 pH 1 0.1 atm 310 0.001 K simulated annealing 1 lowest energy 2 mM peptide, 90% H2O/10% D2O 10mM Phosphate Buffer pH 4.7 400mM dodecylphosphorylcholine - d38 UL 90% H2O/10% D2O micelle Keller and Wuthrich chemical shift assignment CARA Bruker Biospin collection TopSpin 2.1 Keller and Wuthrich peak picking CARA Keller and Wuthrich chemical shift calculation CARA Guntert, Mumenthaler and Wuthrich structure calculation CYANA Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman refinement Amber Avance III 500.15 Bruker AVANCE ILE 1 n 1 ILE 1 A LEU 2 n 2 LEU 2 A PRO 3 n 3 PRO 3 A TRP 4 n 4 TRP 4 A LYS 5 n 5 LYS 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A TRP 8 n 8 TRP 8 A THR 9 n 9 THR 9 A PRO 10 n 10 PRO 10 A TRP 11 n 11 TRP 11 A ARG 12 n 12 ARG 12 A ARG 13 n 13 ARG 13 A NH2 14 n 14 NH2 14 A author_defined_assembly 1 monomeric Mass of peptide is 1852.1395 Daltons mass spectrometry 0 0 2380 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A TRP 6 85.40 95.30 1 A TRP 8 69.69 -68.08 2 A LEU 2 -170.28 91.99 2 A LYS 5 75.39 114.26 2 A TRP 6 -11.78 -92.87 2 A LYS 7 79.97 139.65 3 A LYS 7 -158.23 -69.12 3 A TRP 8 -139.84 -77.64 3 A PRO 10 -83.23 48.54 3 A ARG 12 72.77 -17.19 4 A TRP 4 76.43 74.38 4 A LYS 5 73.94 -167.16 4 A LYS 7 -72.51 48.83 4 A TRP 8 -51.67 -75.06 4 A TRP 11 -158.88 -50.35 5 A TRP 4 -150.64 36.97 5 A TRP 6 72.28 34.19 5 A LYS 7 84.43 -90.26 6 A LYS 5 76.31 -153.68 6 A TRP 8 78.52 30.49 7 A TRP 4 -33.65 95.18 7 A LYS 5 80.54 -9.21 7 A TRP 8 67.24 83.94 7 A ARG 12 -80.52 49.94 8 A LYS 7 82.67 -168.79 10 A LYS 5 -113.64 -162.59 10 A THR 9 71.72 75.70 10 A ARG 12 106.91 -113.01 11 A TRP 4 -23.15 113.71 11 A THR 9 -151.51 57.55 12 A PRO 3 -79.19 46.56 12 A TRP 6 -68.08 -160.47 12 A TRP 11 -68.48 40.45 13 A ARG 12 73.88 -29.12 15 A LYS 5 -37.65 156.43 15 A TRP 8 71.53 85.95 15 A THR 9 71.08 76.31 16 A LEU 2 73.07 78.06 16 A TRP 8 -144.21 30.23 17 A TRP 11 -165.50 -39.64 17 A ARG 12 71.76 -17.63 18 A TRP 8 87.48 20.54 18 A TRP 11 -154.07 -61.92 19 A LEU 2 76.76 81.97 19 A LYS 7 76.32 -176.52 19 A ARG 12 71.50 56.38 20 A TRP 4 -21.02 116.41 20 A THR 9 -39.42 95.46 N Structure of [T9,K7]indolicidin, a non glycosylated analogue of indolicidin 1 N N covale 1.324 both A ARG 13 A C ARG 13 1_555 A NH2 14 A N NH2 14 1_555 ANTIMICROBIAL PROTEIN Antimicrobial Peptide, ANTIMICROBIAL PROTEIN 5ZVF PDB 1 1 5ZVF 1 13 5ZVF 1 13 5ZVF A 1 1 13