0.022202 0.000000 0.000000 0.000000 0.016779 0.000000 0.000000 0.000000 0.013373 0.00000 0.00000 0.00000 0000-0002-5310-9216 Shimizu-Ibuka, A. Furukawa, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 45.040 59.600 74.780 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 S C N 176 N C N 177 N C N 178 N C N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 R C N 319 N O N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N N Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N sing Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing Biochim Biophys Acta Proteins Proteom 1878-1454 1866 1125 1130 10.1016/j.bbapap.2018.08.009 30282610 Structural and functional analysis of miraculin-like protein from Vitis vinifera. 2018 10.2210/pdb5yh4/pdb pdb_00005yh4 100 1 CCD 2016-11-12 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL-5A Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 19879.506 mirauclin-like protein S27A 1 man polymer 62.068 1,2-ETHANEDIOL 7 syn non-polymer 18.015 water 343 nat water no no ESAPDPVLDTEGKQLRSGVDYYILPVIRGRGGGLTLASTGNENCPLDVVQEQHEVSNGLPLTFTPVNPKKGVIRVSTDHN IKFSASTICVQSTLWKLEYDESSGQRFVTTGGVEGNPGRETLDNWFKIEKYEDDYKLVFCPTVCDFCKPVCGDIGIYIQN GYRRLALSDVPFKVMFKKA ESAPDPVLDTEGKQLRSGVDYYILPVIRGRGGGLTLASTGNENCPLDVVQEQHEVSNGLPLTFTPVNPKKGVIRVSTDHN IKFSASTICVQSTLWKLEYDESSGQRFVTTGGVEGNPGRETLDNWFKIEKYEDDYKLVFCPTVCDFCKPVCGDIGIYIQN GYRRLALSDVPFKVMFKKA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Grape sample 1 179 VITISV_025776 29760 Vitis vinifera 562 Escherichia coli Biological sequence 1 2.52 51.28 VAPOR DIFFUSION, HANGING DROP 6.5 0.1 M MES buffer (pH 6.5), 12% PEG 20000 289 citation citation_author chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_entry_details pdbx_modification_feature repository Initial release Data collection Database references Data collection Database references Refinement description Structure summary 1 0 2018-10-03 1 1 2018-10-17 1 2 2023-11-22 1 3 2024-11-13 _citation.country _citation.journal_abbrev _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_PubMed _citation.title _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession Japan JSPS KEKENHI JP15K07445 N PDBJ Y PDBJ 2017-09-27 REL REL 1 A O HOH 1441 6.33 1 A O HOH 1442 6.44 1 A O HOH 1443 10.38 EDO 1,2-ETHANEDIOL HOH water Y 3ZC8 PDB experimental model A CYS 44 Disulfide bridge SG A CYS 44 A CYS 89 SG A CYS 89 1_555 1_555 None A CYS 140 Disulfide bridge SG A CYS 140 A CYS 151 SG A CYS 151 1_555 1_555 None A CYS 144 Disulfide bridge SG A CYS 144 A CYS 147 SG A CYS 147 1_555 1_555 None EDO 1001 2 EDO EDO 1001 A EDO 1002 2 EDO EDO 1002 A EDO 1003 2 EDO EDO 1003 A EDO 1004 2 EDO EDO 1004 A EDO 1005 2 EDO EDO 1005 A EDO 1006 2 EDO EDO 1006 A EDO 1007 2 EDO EDO 1007 A HOH 2202 3 HOH HOH 1101 A HOH 2321 3 HOH HOH 1102 A HOH 2097 3 HOH HOH 1103 A HOH 2236 3 HOH HOH 1104 A HOH 2303 3 HOH HOH 1105 A HOH 2043 3 HOH HOH 1106 A HOH 2208 3 HOH HOH 1107 A HOH 2075 3 HOH HOH 1108 A HOH 2009 3 HOH HOH 1109 A HOH 2162 3 HOH HOH 1110 A HOH 2137 3 HOH HOH 1111 A HOH 2067 3 HOH HOH 1112 A HOH 2139 3 HOH HOH 1113 A HOH 2061 3 HOH HOH 1114 A HOH 2125 3 HOH HOH 1115 A HOH 2072 3 HOH HOH 1116 A HOH 2034 3 HOH HOH 1117 A HOH 2291 3 HOH HOH 1118 A HOH 2330 3 HOH HOH 1119 A HOH 2181 3 HOH HOH 1120 A HOH 2119 3 HOH HOH 1121 A HOH 2193 3 HOH HOH 1122 A HOH 2313 3 HOH HOH 1123 A HOH 2116 3 HOH HOH 1124 A HOH 2175 3 HOH HOH 1125 A HOH 2341 3 HOH HOH 1126 A HOH 2048 3 HOH HOH 1127 A HOH 2252 3 HOH HOH 1128 A HOH 2129 3 HOH HOH 1129 A HOH 2319 3 HOH HOH 1130 A HOH 2013 3 HOH HOH 1131 A HOH 2121 3 HOH HOH 1132 A HOH 2001 3 HOH HOH 1133 A HOH 2042 3 HOH HOH 1134 A HOH 2078 3 HOH HOH 1135 A HOH 2106 3 HOH HOH 1136 A HOH 2130 3 HOH HOH 1137 A HOH 2024 3 HOH HOH 1138 A HOH 2076 3 HOH HOH 1139 A HOH 2110 3 HOH HOH 1140 A HOH 2063 3 HOH HOH 1141 A HOH 2109 3 HOH HOH 1142 A HOH 2280 3 HOH HOH 1143 A HOH 2039 3 HOH HOH 1144 A HOH 2322 3 HOH HOH 1145 A HOH 2238 3 HOH HOH 1146 A HOH 2270 3 HOH HOH 1147 A HOH 2231 3 HOH HOH 1148 A HOH 2177 3 HOH HOH 1149 A HOH 2335 3 HOH HOH 1150 A HOH 2055 3 HOH HOH 1151 A HOH 2192 3 HOH HOH 1152 A HOH 2134 3 HOH HOH 1153 A HOH 2081 3 HOH HOH 1154 A HOH 2178 3 HOH HOH 1155 A HOH 2085 3 HOH HOH 1156 A HOH 2123 3 HOH HOH 1157 A HOH 2016 3 HOH HOH 1158 A HOH 2342 3 HOH HOH 1159 A HOH 2030 3 HOH HOH 1160 A HOH 2267 3 HOH HOH 1161 A HOH 2262 3 HOH HOH 1162 A HOH 2297 3 HOH HOH 1163 A HOH 2191 3 HOH HOH 1164 A HOH 2064 3 HOH HOH 1165 A HOH 2294 3 HOH HOH 1166 A HOH 2279 3 HOH HOH 1167 A HOH 2041 3 HOH HOH 1168 A HOH 2059 3 HOH HOH 1169 A HOH 2113 3 HOH HOH 1170 A HOH 2006 3 HOH HOH 1171 A HOH 2142 3 HOH HOH 1172 A HOH 2003 3 HOH HOH 1173 A HOH 2096 3 HOH HOH 1174 A HOH 2012 3 HOH HOH 1175 A HOH 2146 3 HOH HOH 1176 A HOH 2019 3 HOH HOH 1177 A HOH 2176 3 HOH HOH 1178 A HOH 2077 3 HOH HOH 1179 A HOH 2118 3 HOH HOH 1180 A HOH 2005 3 HOH HOH 1181 A HOH 2002 3 HOH HOH 1182 A HOH 2004 3 HOH HOH 1183 A HOH 2239 3 HOH HOH 1184 A HOH 2074 3 HOH HOH 1185 A HOH 2227 3 HOH HOH 1186 A HOH 2010 3 HOH HOH 1187 A HOH 2020 3 HOH HOH 1188 A HOH 2136 3 HOH HOH 1189 A HOH 2101 3 HOH HOH 1190 A HOH 2094 3 HOH HOH 1191 A HOH 2027 3 HOH HOH 1192 A HOH 2084 3 HOH HOH 1193 A HOH 2102 3 HOH HOH 1194 A HOH 2050 3 HOH HOH 1195 A HOH 2008 3 HOH HOH 1196 A HOH 2122 3 HOH HOH 1197 A HOH 2131 3 HOH HOH 1198 A HOH 2104 3 HOH HOH 1199 A HOH 2327 3 HOH HOH 1200 A HOH 2056 3 HOH HOH 1201 A HOH 2135 3 HOH HOH 1202 A HOH 2194 3 HOH HOH 1203 A HOH 2044 3 HOH HOH 1204 A HOH 2188 3 HOH HOH 1205 A HOH 2047 3 HOH HOH 1206 A HOH 2054 3 HOH HOH 1207 A HOH 2323 3 HOH HOH 1208 A HOH 2228 3 HOH HOH 1209 A HOH 2170 3 HOH HOH 1210 A HOH 2214 3 HOH HOH 1211 A HOH 2258 3 HOH HOH 1212 A HOH 2018 3 HOH HOH 1213 A HOH 2087 3 HOH HOH 1214 A HOH 2045 3 HOH HOH 1215 A HOH 2065 3 HOH HOH 1216 A HOH 2026 3 HOH HOH 1217 A HOH 2089 3 HOH HOH 1218 A HOH 2197 3 HOH HOH 1219 A HOH 2147 3 HOH HOH 1220 A HOH 2053 3 HOH HOH 1221 A HOH 2014 3 HOH HOH 1222 A HOH 2038 3 HOH HOH 1223 A HOH 2127 3 HOH HOH 1224 A HOH 2086 3 HOH HOH 1225 A HOH 2015 3 HOH HOH 1226 A HOH 2046 3 HOH HOH 1227 A HOH 2288 3 HOH HOH 1228 A HOH 2017 3 HOH HOH 1229 A HOH 2117 3 HOH HOH 1230 A HOH 2069 3 HOH HOH 1231 A HOH 2132 3 HOH HOH 1232 A HOH 2032 3 HOH HOH 1233 A HOH 2025 3 HOH HOH 1234 A HOH 2049 3 HOH HOH 1235 A HOH 2230 3 HOH HOH 1236 A HOH 2310 3 HOH HOH 1237 A HOH 2186 3 HOH HOH 1238 A HOH 2062 3 HOH HOH 1239 A HOH 2311 3 HOH HOH 1240 A HOH 2289 3 HOH HOH 1241 A HOH 2051 3 HOH HOH 1242 A HOH 2149 3 HOH HOH 1243 A HOH 2007 3 HOH HOH 1244 A HOH 2058 3 HOH HOH 1245 A HOH 2173 3 HOH HOH 1246 A HOH 2182 3 HOH HOH 1247 A HOH 2225 3 HOH HOH 1248 A HOH 2200 3 HOH HOH 1249 A HOH 2290 3 HOH HOH 1250 A HOH 2302 3 HOH HOH 1251 A HOH 2022 3 HOH HOH 1252 A HOH 2161 3 HOH HOH 1253 A HOH 2035 3 HOH HOH 1254 A HOH 2126 3 HOH HOH 1255 A HOH 2204 3 HOH HOH 1256 A HOH 2332 3 HOH HOH 1257 A HOH 2068 3 HOH HOH 1258 A HOH 2071 3 HOH HOH 1259 A HOH 2145 3 HOH HOH 1260 A HOH 2108 3 HOH HOH 1261 A HOH 2099 3 HOH HOH 1262 A HOH 2143 3 HOH HOH 1263 A HOH 2082 3 HOH HOH 1264 A HOH 2138 3 HOH HOH 1265 A HOH 2277 3 HOH HOH 1266 A HOH 2273 3 HOH HOH 1267 A HOH 2209 3 HOH HOH 1268 A HOH 2098 3 HOH HOH 1269 A HOH 2292 3 HOH HOH 1270 A HOH 2156 3 HOH HOH 1271 A HOH 2052 3 HOH HOH 1272 A HOH 2029 3 HOH HOH 1273 A HOH 2011 3 HOH HOH 1274 A HOH 2031 3 HOH HOH 1275 A HOH 2211 3 HOH HOH 1276 A HOH 2083 3 HOH HOH 1277 A HOH 2060 3 HOH HOH 1278 A HOH 2304 3 HOH HOH 1279 A HOH 2266 3 HOH HOH 1280 A HOH 2023 3 HOH HOH 1281 A HOH 2021 3 HOH HOH 1282 A HOH 2103 3 HOH HOH 1283 A HOH 2033 3 HOH HOH 1284 A HOH 2241 3 HOH HOH 1285 A HOH 2232 3 HOH HOH 1286 A HOH 2040 3 HOH HOH 1287 A HOH 2196 3 HOH HOH 1288 A HOH 2100 3 HOH HOH 1289 A HOH 2318 3 HOH HOH 1290 A HOH 2235 3 HOH HOH 1291 A HOH 2066 3 HOH HOH 1292 A HOH 2120 3 HOH HOH 1293 A HOH 2229 3 HOH HOH 1294 A HOH 2037 3 HOH HOH 1295 A HOH 2221 3 HOH HOH 1296 A HOH 2111 3 HOH HOH 1297 A HOH 2091 3 HOH HOH 1298 A HOH 2299 3 HOH HOH 1299 A HOH 2259 3 HOH HOH 1300 A HOH 2203 3 HOH HOH 1301 A HOH 2295 3 HOH HOH 1302 A HOH 2090 3 HOH HOH 1303 A HOH 2092 3 HOH HOH 1304 A HOH 2260 3 HOH HOH 1305 A HOH 2216 3 HOH HOH 1306 A HOH 2199 3 HOH HOH 1307 A HOH 2249 3 HOH HOH 1308 A HOH 2079 3 HOH HOH 1309 A HOH 2183 3 HOH HOH 1310 A HOH 2201 3 HOH HOH 1311 A HOH 2107 3 HOH HOH 1312 A HOH 2207 3 HOH HOH 1313 A HOH 2141 3 HOH HOH 1314 A HOH 2073 3 HOH HOH 1315 A HOH 2133 3 HOH HOH 1316 A HOH 2217 3 HOH HOH 1317 A HOH 2325 3 HOH HOH 1318 A HOH 2088 3 HOH HOH 1319 A HOH 2222 3 HOH HOH 1320 A HOH 2165 3 HOH HOH 1321 A HOH 2057 3 HOH HOH 1322 A HOH 2257 3 HOH HOH 1323 A HOH 2140 3 HOH HOH 1324 A HOH 2028 3 HOH HOH 1325 A HOH 2105 3 HOH HOH 1326 A HOH 2226 3 HOH HOH 1327 A HOH 2036 3 HOH HOH 1328 A HOH 2263 3 HOH HOH 1329 A HOH 2093 3 HOH HOH 1330 A HOH 2114 3 HOH HOH 1331 A HOH 2179 3 HOH HOH 1332 A HOH 2112 3 HOH HOH 1333 A HOH 2315 3 HOH HOH 1334 A HOH 2276 3 HOH HOH 1335 A HOH 2282 3 HOH HOH 1336 A HOH 2242 3 HOH HOH 1337 A HOH 2308 3 HOH HOH 1338 A HOH 2296 3 HOH HOH 1339 A HOH 2210 3 HOH HOH 1340 A HOH 2080 3 HOH HOH 1341 A HOH 2293 3 HOH HOH 1342 A HOH 2328 3 HOH HOH 1343 A HOH 2243 3 HOH HOH 1344 A HOH 2261 3 HOH HOH 1345 A HOH 2240 3 HOH HOH 1346 A HOH 2184 3 HOH HOH 1347 A HOH 2316 3 HOH HOH 1348 A HOH 2171 3 HOH HOH 1349 A HOH 2333 3 HOH HOH 1350 A HOH 2213 3 HOH HOH 1351 A HOH 2070 3 HOH HOH 1352 A HOH 2187 3 HOH HOH 1353 A HOH 2269 3 HOH HOH 1354 A HOH 2329 3 HOH HOH 1355 A HOH 2223 3 HOH HOH 1356 A HOH 2338 3 HOH HOH 1357 A HOH 2281 3 HOH HOH 1358 A HOH 2158 3 HOH HOH 1359 A HOH 2148 3 HOH HOH 1360 A HOH 2326 3 HOH HOH 1361 A HOH 2264 3 HOH HOH 1362 A HOH 2317 3 HOH HOH 1363 A HOH 2256 3 HOH HOH 1364 A HOH 2128 3 HOH HOH 1365 A HOH 2185 3 HOH HOH 1366 A HOH 2124 3 HOH HOH 1367 A HOH 2343 3 HOH HOH 1368 A HOH 2340 3 HOH HOH 1369 A HOH 2095 3 HOH HOH 1370 A HOH 2275 3 HOH HOH 1371 A HOH 2115 3 HOH HOH 1372 A HOH 2331 3 HOH HOH 1373 A HOH 2255 3 HOH HOH 1374 A HOH 2248 3 HOH HOH 1375 A HOH 2298 3 HOH HOH 1376 A HOH 2212 3 HOH HOH 1377 A HOH 2305 3 HOH HOH 1378 A HOH 2314 3 HOH HOH 1379 A HOH 2237 3 HOH HOH 1380 A HOH 2334 3 HOH HOH 1381 A HOH 2144 3 HOH HOH 1382 A HOH 2174 3 HOH HOH 1383 A HOH 2320 3 HOH HOH 1384 A HOH 2301 3 HOH HOH 1385 A HOH 2244 3 HOH HOH 1386 A HOH 2215 3 HOH HOH 1387 A HOH 2195 3 HOH HOH 1388 A HOH 2286 3 HOH HOH 1389 A HOH 2219 3 HOH HOH 1390 A HOH 2306 3 HOH HOH 1391 A HOH 2253 3 HOH HOH 1392 A HOH 2189 3 HOH HOH 1393 A HOH 2218 3 HOH HOH 1394 A HOH 2285 3 HOH HOH 1395 A HOH 2268 3 HOH HOH 1396 A HOH 2198 3 HOH HOH 1397 A HOH 2167 3 HOH HOH 1398 A HOH 2265 3 HOH HOH 1399 A HOH 2150 3 HOH HOH 1400 A HOH 2205 3 HOH HOH 1401 A HOH 2284 3 HOH HOH 1402 A HOH 2168 3 HOH HOH 1403 A HOH 2166 3 HOH HOH 1404 A HOH 2339 3 HOH HOH 1405 A HOH 2250 3 HOH HOH 1406 A HOH 2159 3 HOH HOH 1407 A HOH 2151 3 HOH HOH 1408 A HOH 2274 3 HOH HOH 1409 A HOH 2336 3 HOH HOH 1410 A HOH 2169 3 HOH HOH 1411 A HOH 2287 3 HOH HOH 1412 A HOH 2163 3 HOH HOH 1413 A HOH 2157 3 HOH HOH 1414 A HOH 2160 3 HOH HOH 1415 A HOH 2324 3 HOH HOH 1416 A HOH 2220 3 HOH HOH 1417 A HOH 2234 3 HOH HOH 1418 A HOH 2251 3 HOH HOH 1419 A HOH 2190 3 HOH HOH 1420 A HOH 2154 3 HOH HOH 1421 A HOH 2180 3 HOH HOH 1422 A HOH 2271 3 HOH HOH 1423 A HOH 2155 3 HOH HOH 1424 A HOH 2307 3 HOH HOH 1425 A HOH 2206 3 HOH HOH 1426 A HOH 2153 3 HOH HOH 1427 A HOH 2233 3 HOH HOH 1428 A HOH 2172 3 HOH HOH 1429 A HOH 2224 3 HOH HOH 1430 A HOH 2337 3 HOH HOH 1431 A HOH 2152 3 HOH HOH 1432 A HOH 2245 3 HOH HOH 1433 A HOH 2254 3 HOH HOH 1434 A HOH 2247 3 HOH HOH 1435 A HOH 2164 3 HOH HOH 1436 A HOH 2300 3 HOH HOH 1437 A HOH 2312 3 HOH HOH 1438 A HOH 2278 3 HOH HOH 1439 A HOH 2309 3 HOH HOH 1440 A HOH 2246 3 HOH HOH 1441 A HOH 2283 3 HOH HOH 1442 A HOH 2272 3 HOH HOH 1443 A GLU 1 n 1 GLU 1 A SER 2 n 2 SER 2 A ALA 3 n 3 ALA 3 A PRO 4 n 4 PRO 4 A ASP 5 n 5 ASP 5 A PRO 6 n 6 PRO 6 A VAL 7 n 7 VAL 7 A LEU 8 n 8 LEU 8 A ASP 9 n 9 ASP 9 A THR 10 n 10 THR 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LYS 13 n 13 LYS 13 A GLN 14 n 14 GLN 14 A LEU 15 n 15 LEU 15 A ARG 16 n 16 ARG 16 A SER 17 n 17 SER 17 A GLY 18 n 18 GLY 18 A VAL 19 n 19 VAL 19 A ASP 20 n 20 ASP 20 A TYR 21 n 21 TYR 21 A TYR 22 n 22 TYR 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A PRO 25 n 25 PRO 25 A VAL 26 n 26 VAL 26 A ILE 27 n 27 ILE 27 A ARG 28 n 28 ARG 28 A GLY 29 n 29 GLY 29 A ARG 30 n 30 ARG 30 A GLY 31 n 31 GLY 31 A GLY 32 n 32 GLY 32 A GLY 33 n 33 GLY 33 A LEU 34 n 34 LEU 34 A THR 35 n 35 THR 35 A LEU 36 n 36 LEU 36 A ALA 37 n 37 ALA 37 A SER 38 n 38 SER 38 A THR 39 n 39 THR 39 A GLY 40 n 40 GLY 40 A ASN 41 n 41 ASN 41 A GLU 42 n 42 GLU 42 A ASN 43 n 43 ASN 43 A CYS 44 n 44 CYS 44 A PRO 45 n 45 PRO 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A VAL 48 n 48 VAL 48 A VAL 49 n 49 VAL 49 A GLN 50 n 50 GLN 50 A GLU 51 n 51 GLU 51 A GLN 52 n 52 GLN 52 A HIS 53 n 53 HIS 53 A GLU 54 n 54 GLU 54 A VAL 55 n 55 VAL 55 A SER 56 n 56 SER 56 A ASN 57 n 57 ASN 57 A GLY 58 n 58 GLY 58 A LEU 59 n 59 LEU 59 A PRO 60 n 60 PRO 60 A LEU 61 n 61 LEU 61 A THR 62 n 62 THR 62 A PHE 63 n 63 PHE 63 A THR 64 n 64 THR 64 A PRO 65 n 65 PRO 65 A VAL 66 n 66 VAL 66 A ASN 67 n 67 ASN 67 A PRO 68 n 68 PRO 68 A LYS 69 n 69 LYS 69 A LYS 70 n 70 LYS 70 A GLY 71 n 71 GLY 71 A VAL 72 n 72 VAL 72 A ILE 73 n 73 ILE 73 A ARG 74 n 74 ARG 74 A VAL 75 n 75 VAL 75 A SER 76 n 76 SER 76 A THR 77 n 77 THR 77 A ASP 78 n 78 ASP 78 A HIS 79 n 79 HIS 79 A ASN 80 n 80 ASN 80 A ILE 81 n 81 ILE 81 A LYS 82 n 82 LYS 82 A PHE 83 n 83 PHE 83 A SER 84 n 84 SER 84 A ALA 85 n 85 ALA 85 A SER 86 n 86 SER 86 A THR 87 n 87 THR 87 A ILE 88 n 88 ILE 88 A CYS 89 n 89 CYS 89 A VAL 90 n 90 VAL 90 A GLN 91 n 91 GLN 91 A SER 92 n 92 SER 92 A THR 93 n 93 THR 93 A LEU 94 n 94 LEU 94 A TRP 95 n 95 TRP 95 A LYS 96 n 96 LYS 96 A LEU 97 n 97 LEU 97 A GLU 98 n 98 GLU 98 A TYR 99 n 99 TYR 99 A ASP 100 n 100 ASP 100 A GLU 101 n 101 GLU 101 A SER 102 n 102 SER 102 A SER 103 n 103 SER 103 A GLY 104 n 104 GLY 104 A GLN 105 n 105 GLN 105 A ARG 106 n 106 ARG 106 A PHE 107 n 107 PHE 107 A VAL 108 n 108 VAL 108 A THR 109 n 109 THR 109 A THR 110 n 110 THR 110 A GLY 111 n 111 GLY 111 A GLY 112 n 112 GLY 112 A VAL 113 n 113 VAL 113 A GLU 114 n 114 GLU 114 A GLY 115 n 115 GLY 115 A ASN 116 n 116 ASN 116 A PRO 117 n 117 PRO 117 A GLY 118 n 118 GLY 118 A ARG 119 n 119 ARG 119 A GLU 120 n 120 GLU 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A ASP 123 n 123 ASP 123 A ASN 124 n 124 ASN 124 A TRP 125 n 125 TRP 125 A PHE 126 n 126 PHE 126 A LYS 127 n 127 LYS 127 A ILE 128 n 128 ILE 128 A GLU 129 n 129 GLU 129 A LYS 130 n 130 LYS 130 A TYR 131 n 131 TYR 131 A GLU 132 n 132 GLU 132 A ASP 133 n 133 ASP 133 A ASP 134 n 134 ASP 134 A TYR 135 n 135 TYR 135 A LYS 136 n 136 LYS 136 A LEU 137 n 137 LEU 137 A VAL 138 n 138 VAL 138 A PHE 139 n 139 PHE 139 A CYS 140 n 140 CYS 140 A PRO 141 n 141 PRO 141 A THR 142 n 142 THR 142 A VAL 143 n 143 VAL 143 A CYS 144 n 144 CYS 144 A ASP 145 n 145 ASP 145 A PHE 146 n 146 PHE 146 A CYS 147 n 147 CYS 147 A LYS 148 n 148 LYS 148 A PRO 149 n 149 PRO 149 A VAL 150 n 150 VAL 150 A CYS 151 n 151 CYS 151 A GLY 152 n 152 GLY 152 A ASP 153 n 153 ASP 153 A ILE 154 n 154 ILE 154 A GLY 155 n 155 GLY 155 A ILE 156 n 156 ILE 156 A TYR 157 n 157 TYR 157 A ILE 158 n 158 ILE 158 A GLN 159 n 159 GLN 159 A ASN 160 n 160 ASN 160 A GLY 161 n 161 GLY 161 A TYR 162 n 162 TYR 162 A ARG 163 n 163 ARG 163 A ARG 164 n 164 ARG 164 A LEU 165 n 165 LEU 165 A ALA 166 n 166 ALA 166 A LEU 167 n 167 LEU 167 A SER 168 n 168 SER 168 A ASP 169 n 169 ASP 169 A VAL 170 n 170 VAL 170 A PRO 171 n 171 PRO 171 A PHE 172 n 172 PHE 172 A LYS 173 n 173 LYS 173 A VAL 174 n 174 VAL 174 A MET 175 n 175 MET 175 A PHE 176 n 176 PHE 176 A LYS 177 n 177 LYS 177 A LYS 178 n 178 LYS 178 A ALA 179 n 179 ALA 179 A author_defined_assembly 1 monomeric none 1220 20 9660 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 24 A N LEU 24 A O MET 175 A O MET 175 A N ALA 37 A N ALA 37 A O ASP 47 A O ASP 47 A N GLN 50 A N GLN 50 A O ARG 163 A O ARG 163 A O ALA 166 A O ALA 166 A N GLY 155 A N GLY 155 A O ILE 154 A O ILE 154 A N LEU 137 A N LEU 137 A O VAL 138 A O VAL 138 A N LYS 127 A N LYS 127 A N THR 62 A N THR 62 A O LYS 82 A O LYS 82 A N LYS 96 A N LYS 96 A O THR 109 A O THR 109 1 A THR 109 -117.12 -166.29 1 A THR 110 -124.82 -157.91 1 A GLU 132 55.85 -119.97 1 A ASP 134 -133.19 -142.07 1 A CYS 140 -161.65 75.50 12.658 0.00 0.00 0.00 0.00 0.00 0.00 0.964 0.960 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.18824 0.17423 0.17492 1.30 35.93 2455 47798 4.9 99.98 0.648 0.029 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.049 0.048 0.80 0.80 1.20 3ZC8 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.30 35.93 343 1768 28 0 1397 0.007 0.020 1500 0.002 0.020 1397 1.355 1.977 2031 0.863 3.000 3261 6.186 5.000 191 31.727 24.348 69 9.830 15.000 255 17.581 15.000 10 0.076 0.200 221 0.005 0.021 1660 0.001 0.020 298 0.807 1.056 729 0.802 1.055 728 1.409 1.583 913 1.409 1.583 914 0.900 1.183 771 0.898 1.183 771 1.457 1.711 1112 4.670 14.824 1728 4.089 13.228 1623 0.204 0.202 1.334 171 3512 20 100.00 1.30 35.93 5YH4 50318 1 11.9 6.1 100 1 refinement REFMAC 5.8.0158 data reduction MOSFLM data scaling SCALA phasing MOLREP N Miraculin-like protein from Vitis vinifera 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N A GLY 118 A GLY 118 HELX_P A TRP 125 A TRP 125 5 AA1 8 disulf 2.017 A CYS 44 A SG CYS 44 1_555 A CYS 89 A SG CYS 89 1_555 disulf 2.065 A CYS 140 A SG CYS 140 1_555 A CYS 151 A SG CYS 151 1_555 disulf 2.043 A CYS 144 A SG CYS 144 1_555 A CYS 147 A SG CYS 147 1_555 HYDROLASE INHIBITOR protease inhibitor, beta-trefoil fold, Kunitz superfamily, miraculin, HYDROLASE INHIBITOR A CYS 44 A CYS 44 1 A PRO 45 A PRO 45 -8.21 A5BCQ0_VITVI UNP 1 25 A5BCQ0 ESSPDPVLDTEGKQLRSGVDYYILPVIRGRGGGLTLASTGNENCPLDVVQEQHEVSNGLPLTFTPVNPKKGVIRVSTDHN IKFSASTICVQSTLWKLEYDESSGQRFVTTGGVEGNPGXETLDNWFKIEKYEDDYKLVFCPTVCDFCKPVCGDIGIYIQN GYRRLALSDVPFKVMFKKA 25 203 5YH4 1 179 A5BCQ0 A 1 1 179 1 SER engineered mutation ALA 3 5YH4 A A5BCQ0 UNP 27 3 2 6 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 21 A TYR 21 A PRO 25 A PRO 25 A VAL 174 A VAL 174 A LYS 178 A LYS 178 A LEU 34 A LEU 34 A ALA 37 A ALA 37 A ASP 47 A ASP 47 A GLN 50 A GLN 50 A TYR 162 A TYR 162 A SER 168 A SER 168 A GLY 152 A GLY 152 A GLN 159 A GLN 159 A ASP 134 A ASP 134 A PHE 139 A PHE 139 A LYS 127 A LYS 127 A TYR 131 A TYR 131 A LEU 61 A LEU 61 A PRO 65 A PRO 65 A HIS 79 A HIS 79 A PHE 83 A PHE 83 A LYS 96 A LYS 96 A TYR 99 A TYR 99 A ARG 106 A ARG 106 A THR 109 A THR 109 binding site for residue EDO A 1001 A EDO 1001 Software 5 binding site for residue EDO A 1002 A EDO 1002 Software 6 binding site for residue EDO A 1003 A EDO 1003 Software 6 binding site for residue EDO A 1004 A EDO 1004 Software 5 binding site for residue EDO A 1005 A EDO 1005 Software 6 binding site for residue EDO A 1006 A EDO 1006 Software 8 binding site for residue EDO A 1007 A EDO 1007 Software 5 A THR 109 A THR 109 5 1_555 A ARG 164 A ARG 164 5 1_555 A HOH 1151 I HOH 5 1_555 A HOH 1221 I HOH 5 1_555 A HOH 1260 I HOH 5 1_555 A HIS 53 A HIS 53 6 4_445 A THR 87 A THR 87 6 1_555 A CYS 89 A CYS 89 6 1_555 A GLN 91 A GLN 91 6 1_555 A THR 93 A THR 93 6 1_555 A HOH 1101 I HOH 6 1_555 A GLY 31 A GLY 31 6 1_555 A GLY 32 A GLY 32 6 1_555 A GLU 54 A GLU 54 6 1_555 A SER 56 A SER 56 6 1_555 A ASN 57 A ASN 57 6 1_555 A HOH 1199 I HOH 6 1_555 A GLU 51 A GLU 51 5 1_555 A GLN 52 A GLN 52 5 1_555 A TYR 162 A TYR 162 5 1_555 A EDO 1006 G EDO 5 3_645 A HOH 1217 I HOH 5 1_555 A GLN 14 A GLN 14 6 1_555 A HOH 1106 I HOH 6 1_555 A HOH 1205 I HOH 6 1_555 A HOH 1208 I HOH 6 1_555 A HOH 1253 I HOH 6 1_555 A HOH 1266 I HOH 6 1_555 A GLN 52 A GLN 52 8 3_655 A SER 86 A SER 86 8 2_555 A LYS 148 A LYS 148 8 1_555 A GLY 161 A GLY 161 8 3_655 A TYR 162 A TYR 162 8 3_655 A EDO 1004 E EDO 8 3_655 A HOH 1132 I HOH 8 1_555 A HOH 1309 I HOH 8 2_555 A THR 10 A THR 10 5 1_555 A ASP 134 A ASP 134 5 1_555 A MET 175 A MET 175 5 1_555 A HOH 1119 I HOH 5 1_555 A HOH 1239 I HOH 5 4_555 19 P 21 21 21