0.006220 0.000000 0.001598 0.000000 0.018548 0.000000 0.000000 0.000000 0.021157 0.00000 0.00000 0.00000 Gebai, A. Gorelik, A. Illes, K. Nagar, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 104.41 90.00 160.767 53.913 48.802 C10 H22 O6 238.278 PENTAETHYLENE GLYCOL PEG400 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N C N 9 N C N 10 N O N 11 N C N 12 N C N 13 N O N 14 N C N 15 N C N 16 N O N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N N N 40 S C N 41 N C N 42 N O N 43 N C N 44 N O N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N N N 53 S C N 54 N C N 55 N O N 56 N C N 57 N C N 58 N C N 59 N N N 60 N C N 61 N N N 62 N N N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N O N 86 N N N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 R C N 113 S C N 114 S C N 115 S C N 116 R C N 117 N C N 118 N O N 119 N O N 120 N O N 121 N O N 122 N O N 123 N O N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N CL N 137 N N N 138 R C N 139 N C N 140 N O N 141 N C N 142 N S N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 R C N 152 S C N 153 R C N 154 S C N 155 S C N 156 N C N 157 N O N 158 N O N 159 N O N 160 N O N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N N N 175 S C N 176 N C N 177 N O N 178 N C N 179 N C N 180 N C N 181 N O N 182 N N N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 N C N 199 N C N 200 N C N 201 N O N 202 N O N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 N C N 215 N C N 216 N O N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N C N 224 N O N 225 N C N 226 N O N 227 N C N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N N Y 244 N C Y 245 N C Y 246 N N N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N O N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 S C N 266 N C N 267 N C N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N C N 313 N N N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 S C N 331 S C N 332 S C N 333 S C N 334 R C N 335 N C N 336 N O N 337 N O N 338 N O N 339 N O N 340 N O N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C N 359 N C N 360 N S N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 R C N 375 R C N 376 R C N 377 S C N 378 R C N 379 N C N 380 N C N 381 N C N 382 N N N 383 N O N 384 N O N 385 N O N 386 N O N 387 N O N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N O N 405 N C N 406 N C N 407 N O N 408 N C N 409 N C N 410 N O N 411 N C N 412 N C N 413 N O N 414 N C N 415 N C N 416 N O N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N N N 436 S C N 437 N C N 438 N O N 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N C Y 444 N C Y 445 N C N 446 N O N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C N 463 N C N 464 N C N 465 N O N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N N N 476 S C N 477 N C N 478 N O N 479 N C N 480 N O N 481 N O N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N N N 490 S C N 491 N C N 492 N O N 493 R C N 494 N O N 495 N C N 496 N O N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N N N 507 S C N 508 N C N 509 N O N 510 N C Y 511 N C Y 512 N C Y 513 N C Y 514 N N Y 515 N C Y 516 N C Y 517 N C Y 518 N C Y 519 N C N 520 N O N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N N N 534 S C N 535 N C N 536 N O N 537 N C Y 538 N C Y 539 N C Y 540 N C Y 541 N C Y 542 N C Y 543 N C N 544 N O N 545 N O N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N N N 558 S C N 559 N C N 560 N O N 561 N C N 562 N C N 563 N C N 564 N O N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing Y 237 N sing Y 238 N doub Y 239 N doub N 240 N sing Y 241 N sing N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing Y 429 N doub Y 430 N sing Y 431 N sing N 432 N sing Y 433 N doub N 434 N sing Y 435 N doub N 436 N sing Y 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N doub N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N doub N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing Y 498 N doub Y 499 N sing Y 500 N sing N 501 N sing Y 502 N doub Y 503 N sing Y 504 N sing N 505 N sing Y 506 N sing Y 507 N doub N 508 N sing Y 509 N doub N 510 N sing Y 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N doub N 522 N sing N 523 N sing N 524 N sing N 525 N sing Y 526 N doub Y 527 N sing Y 528 N sing N 529 N sing Y 530 N doub N 531 N sing Y 532 N doub N 533 N sing Y 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N doub N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing UK Nat Commun 2041-1723 9 1621 1621 10.1038/s41467-018-03844-2 29692406 Structural basis for the activation of acid ceramidase. 2018 10.2210/pdb5u81/pdb pdb_00005u81 100 1 CCD 2016-09-17 RAYONIX MX-300 SINGLE WAVELENGTH M x-ray 1 0.9801 1.0 08ID-1 CLSI 0.9801 SYNCHROTRON CLSI BEAMLINE 08ID-1 44157.516 Acid ceramidase isoform b 3.5.1.23 UNP residues 22-395 1 man polymer 1056.964 alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 910.823 alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 92.094 GLYCEROL 2 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 194.226 TETRAETHYLENE GLYCOL 1 syn non-polymer 238.278 PENTAETHYLENE GLYCOL 1 syn non-polymer 18.015 water 303 nat water no no DRHHHHHHKLQHAPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKGPMLKIIVNSFKNMVNTFVPSG KVMQMVDQKLPDLLGQFSGPYEEEMKGIADVTEIPLGEIISFNIFYELFTMATSIITEDKKGHLLHVRNMDFGIFLGWNI NNNTWVITEELKPLTVNLDFQRNSKTVFKATSFAGYVGMLTGFKPGQFSLTLNERFSMNGGYLGLLEWILGKKDASWIGF ITRSVLENATSYEEAKNILAKTKLLAPAYFILGGNQSGEGCVITRERKDSLDIYELDPKQGRWYVVQTNYDRWKNPLFLD DRRTPAQTCLKRTTQESLSFATLYDILSTKPVLNKLTVFTALMDVTKNHYEAYLRDCPDPCVGW DRHHHHHHKLQHAPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKGPMLKIIVNSFKNMVNTFVPSG KVMQMVDQKLPDLLGQFSGPYEEEMKGIADVTEIPLGEIISFNIFYELFTMATSIITEDKKGHLLHVRNMDFGIFLGWNI NNNTWVITEELKPLTVNLDFQRNSKTVFKATSFAGYVGMLTGFKPGQFSLTLNERFSMNGGYLGLLEWILGKKDASWIGF ITRSVLENATSYEEAKNILAKTKLLAPAYFILGGNQSGEGCVITRERKDSLDIYELDPKQGRWYVVQTNYDRWKNPLFLD DRRTPAQTCLKRTTQESLSFATLYDILSTKPVLNKLTVFTALMDVTKNHYEAYLRDCPDPCVGW A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Naked mole rat sample 1 384 ASAH1 10181 Heterocephalus glaber 7108 Spodoptera frugiperda Biological sequence 1 2.32 46.97 VAPOR DIFFUSION, SITTING DROP MES glycerol PEG 1000 PEG 600 6 298 citation citation_author entity atom_site atom_site_anisotrop chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_special_symmetry pdbx_validate_close_contact struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_entry_details pdbx_modification_feature struct_conn repository Initial release Carbohydrate remediation repository Remediation Data collection Database references Data collection Structure summary Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Derived calculations Structure summary 1 0 2018-03-28 1 1 2018-05-02 1 2 2019-04-17 2 0 2020-07-29 2 1 2024-11-20 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _entity.pdbx_ec _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_special_symmetry.label_asym_id _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag B NAG 1 n B NAG 1 B NAG 2 n B NAG 2 C BMA 1 n B BMA 3 D MAN 1 n B MAN 4 D MAN 2 n B MAN 5 E FUC 1 n B FUC 6 B NAG 3 n C NAG 1 B NAG 4 n C NAG 2 C BMA 2 n C BMA 3 D MAN 3 n C MAN 4 D MAN 4 n C MAN 5 B NAG 5 n D NAG 1 B NAG 6 n D NAG 2 DManpb b-D-mannopyranose b-D-Manp Man LFucpa a-L-fucopyranose a-L-Fucp Fuc DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc N RCSB Y RCSB 2016-12-13 REL REL oligosaccharide oligosaccharide oligosaccharide DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-3-4/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}[(6+1)][a-L-Fucp]{}}} 2 PDB-CARE LINUCS DManpa1-3DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c6-d1_d3-e1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}}}}} 3 PDB-CARE LINUCS DGlcpNAcb1-4DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 4 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 4 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 BMA NAG 3 2 2 O1 HO4 sing C1 O3 MAN BMA 4 3 2 O1 HO3 sing C1 O6 MAN BMA 5 3 2 O1 HO6 sing C1 O6 FUC NAG 6 1 2 O1 HO6 sing C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 BMA NAG 3 2 3 O1 HO4 sing C1 O6 MAN BMA 4 3 3 O1 HO6 sing C1 O3 MAN MAN 5 4 3 O1 HO3 sing C1 O4 NAG NAG 2 1 4 O1 HO4 sing n n n n n n n n n n n n n GOL GLYCEROL CL CHLORIDE ION PG4 TETRAETHYLENE GLYCOL 1PE PENTAETHYLENE GLYCOL HOH water Y B NAG 1 Carbohydrate C1 B NAG A ASN 173 ASN ND2 A ASN 162 1_555 NAG 1 1_555 N-Glycosylation C NAG 1 Carbohydrate C1 C NAG A ASN 259 ASN ND2 A ASN 248 1_555 NAG 1 1_555 N-Glycosylation D NAG 1 Carbohydrate C1 D NAG A ASN 286 ASN ND2 A ASN 275 1_555 NAG 1 1_555 N-Glycosylation A CYS 31 Disulfide bridge SG A CYS 20 A CYS 340 SG A CYS 329 1_555 1_555 None A CYS 388 Disulfide bridge SG A CYS 377 A CYS 392 SG A CYS 381 1_555 1_555 None GOL 1 5 GOL GOL 414 A GOL 2 5 GOL GOL 415 A CL 1 6 CL CL 416 A CL 2 6 CL CL 417 A PG4 1 7 PG4 PG4 418 A 1PE 1 8 1PE 1PE 419 A HOH 67 9 HOH HOH 501 A HOH 289 9 HOH HOH 502 A HOH 291 9 HOH HOH 503 A HOH 261 9 HOH HOH 504 A HOH 95 9 HOH HOH 505 A HOH 115 9 HOH HOH 506 A HOH 282 9 HOH HOH 507 A HOH 279 9 HOH HOH 508 A HOH 196 9 HOH HOH 509 A HOH 183 9 HOH HOH 510 A HOH 152 9 HOH HOH 511 A HOH 75 9 HOH HOH 512 A HOH 114 9 HOH HOH 513 A HOH 172 9 HOH HOH 514 A HOH 109 9 HOH HOH 515 A HOH 254 9 HOH HOH 516 A HOH 285 9 HOH HOH 517 A HOH 187 9 HOH HOH 518 A HOH 243 9 HOH HOH 519 A HOH 202 9 HOH HOH 520 A HOH 39 9 HOH HOH 521 A HOH 112 9 HOH HOH 522 A HOH 28 9 HOH HOH 523 A HOH 240 9 HOH HOH 524 A HOH 213 9 HOH HOH 525 A HOH 133 9 HOH HOH 526 A HOH 298 9 HOH HOH 527 A HOH 276 9 HOH HOH 528 A HOH 111 9 HOH HOH 529 A HOH 88 9 HOH HOH 530 A HOH 121 9 HOH HOH 531 A HOH 171 9 HOH HOH 532 A HOH 37 9 HOH HOH 533 A HOH 269 9 HOH HOH 534 A HOH 297 9 HOH HOH 535 A HOH 74 9 HOH HOH 536 A HOH 150 9 HOH HOH 537 A HOH 50 9 HOH HOH 538 A HOH 281 9 HOH HOH 539 A HOH 233 9 HOH HOH 540 A HOH 231 9 HOH HOH 541 A HOH 61 9 HOH HOH 542 A HOH 13 9 HOH HOH 543 A HOH 35 9 HOH HOH 544 A HOH 300 9 HOH HOH 545 A HOH 232 9 HOH HOH 546 A HOH 158 9 HOH HOH 547 A HOH 165 9 HOH HOH 548 A HOH 190 9 HOH HOH 549 A HOH 83 9 HOH HOH 550 A HOH 267 9 HOH HOH 551 A HOH 5 9 HOH HOH 552 A HOH 205 9 HOH HOH 553 A HOH 27 9 HOH HOH 554 A HOH 29 9 HOH HOH 555 A HOH 73 9 HOH HOH 556 A HOH 10 9 HOH HOH 557 A HOH 144 9 HOH HOH 558 A HOH 246 9 HOH HOH 559 A HOH 22 9 HOH HOH 560 A HOH 12 9 HOH HOH 561 A HOH 153 9 HOH HOH 562 A HOH 1 9 HOH HOH 563 A HOH 287 9 HOH HOH 564 A HOH 6 9 HOH HOH 565 A HOH 268 9 HOH HOH 566 A HOH 57 9 HOH HOH 567 A HOH 236 9 HOH HOH 568 A HOH 36 9 HOH HOH 569 A HOH 43 9 HOH HOH 570 A HOH 56 9 HOH HOH 571 A HOH 107 9 HOH HOH 572 A HOH 3 9 HOH HOH 573 A HOH 70 9 HOH HOH 574 A HOH 151 9 HOH HOH 575 A HOH 60 9 HOH HOH 576 A HOH 207 9 HOH HOH 577 A HOH 34 9 HOH HOH 578 A HOH 226 9 HOH HOH 579 A HOH 125 9 HOH HOH 580 A HOH 251 9 HOH HOH 581 A HOH 71 9 HOH HOH 582 A HOH 249 9 HOH HOH 583 A HOH 21 9 HOH HOH 584 A HOH 25 9 HOH HOH 585 A HOH 195 9 HOH HOH 586 A HOH 98 9 HOH HOH 587 A HOH 173 9 HOH HOH 588 A HOH 51 9 HOH HOH 589 A HOH 168 9 HOH HOH 590 A HOH 192 9 HOH HOH 591 A HOH 179 9 HOH HOH 592 A HOH 227 9 HOH HOH 593 A HOH 7 9 HOH HOH 594 A HOH 119 9 HOH HOH 595 A HOH 203 9 HOH HOH 596 A HOH 175 9 HOH HOH 597 A HOH 16 9 HOH HOH 598 A HOH 55 9 HOH HOH 599 A HOH 295 9 HOH HOH 600 A HOH 85 9 HOH HOH 601 A HOH 130 9 HOH HOH 602 A HOH 94 9 HOH HOH 603 A HOH 174 9 HOH HOH 604 A HOH 54 9 HOH HOH 605 A HOH 253 9 HOH HOH 606 A HOH 235 9 HOH HOH 607 A HOH 76 9 HOH HOH 608 A HOH 26 9 HOH HOH 609 A HOH 49 9 HOH HOH 610 A HOH 9 9 HOH HOH 611 A HOH 214 9 HOH HOH 612 A HOH 99 9 HOH HOH 613 A HOH 134 9 HOH HOH 614 A HOH 283 9 HOH HOH 615 A HOH 59 9 HOH HOH 616 A HOH 104 9 HOH HOH 617 A HOH 229 9 HOH HOH 618 A HOH 62 9 HOH HOH 619 A HOH 116 9 HOH HOH 620 A HOH 78 9 HOH HOH 621 A HOH 15 9 HOH HOH 622 A HOH 33 9 HOH HOH 623 A HOH 274 9 HOH HOH 624 A HOH 278 9 HOH HOH 625 A HOH 46 9 HOH HOH 626 A HOH 44 9 HOH HOH 627 A HOH 288 9 HOH HOH 628 A HOH 234 9 HOH HOH 629 A HOH 8 9 HOH HOH 630 A HOH 40 9 HOH HOH 631 A HOH 216 9 HOH HOH 632 A HOH 96 9 HOH HOH 633 A HOH 160 9 HOH HOH 634 A HOH 123 9 HOH HOH 635 A HOH 228 9 HOH HOH 636 A HOH 90 9 HOH HOH 637 A HOH 32 9 HOH HOH 638 A HOH 18 9 HOH HOH 639 A HOH 72 9 HOH HOH 640 A HOH 211 9 HOH HOH 641 A HOH 91 9 HOH HOH 642 A HOH 84 9 HOH HOH 643 A HOH 47 9 HOH HOH 644 A HOH 69 9 HOH HOH 645 A HOH 64 9 HOH HOH 646 A HOH 161 9 HOH HOH 647 A HOH 92 9 HOH HOH 648 A HOH 63 9 HOH HOH 649 A HOH 20 9 HOH HOH 650 A HOH 53 9 HOH HOH 651 A HOH 17 9 HOH HOH 652 A HOH 68 9 HOH HOH 653 A HOH 48 9 HOH HOH 654 A HOH 163 9 HOH HOH 655 A HOH 176 9 HOH HOH 656 A HOH 97 9 HOH HOH 657 A HOH 79 9 HOH HOH 658 A HOH 58 9 HOH HOH 659 A HOH 4 9 HOH HOH 660 A HOH 139 9 HOH HOH 661 A HOH 108 9 HOH HOH 662 A HOH 212 9 HOH HOH 663 A HOH 220 9 HOH HOH 664 A HOH 193 9 HOH HOH 665 A HOH 2 9 HOH HOH 666 A HOH 146 9 HOH HOH 667 A HOH 11 9 HOH HOH 668 A HOH 303 9 HOH HOH 669 A HOH 124 9 HOH HOH 670 A HOH 178 9 HOH HOH 671 A HOH 155 9 HOH HOH 672 A HOH 290 9 HOH HOH 673 A HOH 137 9 HOH HOH 674 A HOH 265 9 HOH HOH 675 A HOH 52 9 HOH HOH 676 A HOH 141 9 HOH HOH 677 A HOH 122 9 HOH HOH 678 A HOH 131 9 HOH HOH 679 A HOH 77 9 HOH HOH 680 A HOH 241 9 HOH HOH 681 A HOH 31 9 HOH HOH 682 A HOH 271 9 HOH HOH 683 A HOH 188 9 HOH HOH 684 A HOH 66 9 HOH HOH 685 A HOH 164 9 HOH HOH 686 A HOH 147 9 HOH HOH 687 A HOH 19 9 HOH HOH 688 A HOH 167 9 HOH HOH 689 A HOH 259 9 HOH HOH 690 A HOH 135 9 HOH HOH 691 A HOH 45 9 HOH HOH 692 A HOH 42 9 HOH HOH 693 A HOH 221 9 HOH HOH 694 A HOH 128 9 HOH HOH 695 A HOH 120 9 HOH HOH 696 A HOH 102 9 HOH HOH 697 A HOH 263 9 HOH HOH 698 A HOH 65 9 HOH HOH 699 A HOH 23 9 HOH HOH 700 A HOH 101 9 HOH HOH 701 A HOH 301 9 HOH HOH 702 A HOH 209 9 HOH HOH 703 A HOH 284 9 HOH HOH 704 A HOH 222 9 HOH HOH 705 A HOH 41 9 HOH HOH 706 A HOH 186 9 HOH HOH 707 A HOH 110 9 HOH HOH 708 A HOH 140 9 HOH HOH 709 A HOH 181 9 HOH HOH 710 A HOH 218 9 HOH HOH 711 A HOH 260 9 HOH HOH 712 A HOH 264 9 HOH HOH 713 A HOH 250 9 HOH HOH 714 A HOH 206 9 HOH HOH 715 A HOH 127 9 HOH HOH 716 A HOH 280 9 HOH HOH 717 A HOH 217 9 HOH HOH 718 A HOH 157 9 HOH HOH 719 A HOH 105 9 HOH HOH 720 A HOH 93 9 HOH HOH 721 A HOH 14 9 HOH HOH 722 A HOH 138 9 HOH HOH 723 A HOH 117 9 HOH HOH 724 A HOH 245 9 HOH HOH 725 A HOH 87 9 HOH HOH 726 A HOH 154 9 HOH HOH 727 A HOH 296 9 HOH HOH 728 A HOH 148 9 HOH HOH 729 A HOH 106 9 HOH HOH 730 A HOH 200 9 HOH HOH 731 A HOH 82 9 HOH HOH 732 A HOH 86 9 HOH HOH 733 A HOH 145 9 HOH HOH 734 A HOH 126 9 HOH HOH 735 A HOH 162 9 HOH HOH 736 A HOH 224 9 HOH HOH 737 A HOH 223 9 HOH HOH 738 A HOH 184 9 HOH HOH 739 A HOH 30 9 HOH HOH 740 A HOH 286 9 HOH HOH 741 A HOH 248 9 HOH HOH 742 A HOH 169 9 HOH HOH 743 A HOH 118 9 HOH HOH 744 A HOH 294 9 HOH HOH 745 A HOH 103 9 HOH HOH 746 A HOH 252 9 HOH HOH 747 A HOH 272 9 HOH HOH 748 A HOH 166 9 HOH HOH 749 A HOH 258 9 HOH HOH 750 A HOH 257 9 HOH HOH 751 A HOH 201 9 HOH HOH 752 A HOH 100 9 HOH HOH 753 A HOH 208 9 HOH HOH 754 A HOH 266 9 HOH HOH 755 A HOH 210 9 HOH HOH 756 A HOH 132 9 HOH HOH 757 A HOH 204 9 HOH HOH 758 A HOH 215 9 HOH HOH 759 A HOH 113 9 HOH HOH 760 A HOH 24 9 HOH HOH 761 A HOH 199 9 HOH HOH 762 A HOH 180 9 HOH HOH 763 A HOH 170 9 HOH HOH 764 A HOH 185 9 HOH HOH 765 A HOH 156 9 HOH HOH 766 A HOH 80 9 HOH HOH 767 A HOH 142 9 HOH HOH 768 A HOH 293 9 HOH HOH 769 A HOH 292 9 HOH HOH 770 A HOH 238 9 HOH HOH 771 A HOH 177 9 HOH HOH 772 A HOH 149 9 HOH HOH 773 A HOH 273 9 HOH HOH 774 A HOH 270 9 HOH HOH 775 A HOH 277 9 HOH HOH 776 A HOH 239 9 HOH HOH 777 A HOH 182 9 HOH HOH 778 A HOH 191 9 HOH HOH 779 A HOH 159 9 HOH HOH 780 A HOH 242 9 HOH HOH 781 A HOH 244 9 HOH HOH 782 A HOH 89 9 HOH HOH 783 A HOH 197 9 HOH HOH 784 A HOH 129 9 HOH HOH 785 A HOH 262 9 HOH HOH 786 A HOH 230 9 HOH HOH 787 A HOH 255 9 HOH HOH 788 A HOH 189 9 HOH HOH 789 A HOH 225 9 HOH HOH 790 A HOH 302 9 HOH HOH 791 A HOH 299 9 HOH HOH 792 A HOH 143 9 HOH HOH 793 A HOH 219 9 HOH HOH 794 A HOH 194 9 HOH HOH 795 A HOH 256 9 HOH HOH 796 A HOH 81 9 HOH HOH 797 A HOH 237 9 HOH HOH 798 A HOH 275 9 HOH HOH 799 A HOH 38 9 HOH HOH 800 A HOH 136 9 HOH HOH 801 A HOH 247 9 HOH HOH 802 A HOH 198 9 HOH HOH 803 A n 1 12 A n 2 13 A n 3 14 A n 4 15 A n 5 16 A n 6 17 A n 7 18 A n 8 19 A n 9 20 A n 10 21 A n 11 22 A n 12 23 A n 13 24 A n 14 25 A n 15 26 A TRP 27 n 16 TRP 27 A THR 28 n 17 THR 28 A GLU 29 n 18 GLU 29 A ASP 30 n 19 ASP 30 A CYS 31 n 20 CYS 31 A ARG 32 n 21 ARG 32 A LYS 33 n 22 LYS 33 A SER 34 n 23 SER 34 A THR 35 n 24 THR 35 A TYR 36 n 25 TYR 36 A PRO 37 n 26 PRO 37 A PRO 38 n 27 PRO 38 A SER 39 n 28 SER 39 A GLY 40 n 29 GLY 40 A PRO 41 n 30 PRO 41 A THR 42 n 31 THR 42 A TYR 43 n 32 TYR 43 A ARG 44 n 33 ARG 44 A GLY 45 n 34 GLY 45 A PRO 46 n 35 PRO 46 A VAL 47 n 36 VAL 47 A PRO 48 n 37 PRO 48 A TRP 49 n 38 TRP 49 A TYR 50 n 39 TYR 50 A THR 51 n 40 THR 51 A ILE 52 n 41 ILE 52 A ASN 53 n 42 ASN 53 A LEU 54 n 43 LEU 54 A ASP 55 n 44 ASP 55 A LEU 56 n 45 LEU 56 A PRO 57 n 46 PRO 57 A PRO 58 n 47 PRO 58 A TYR 59 n 48 TYR 59 A LYS 60 n 49 LYS 60 A ARG 61 n 50 ARG 61 A TRP 62 n 51 TRP 62 A HIS 63 n 52 HIS 63 A GLU 64 n 53 GLU 64 A LEU 65 n 54 LEU 65 A MET 66 n 55 MET 66 A VAL 67 n 56 VAL 67 A ASP 68 n 57 ASP 68 A LYS 69 n 58 LYS 69 A GLY 70 n 59 GLY 70 A PRO 71 n 60 PRO 71 A MET 72 n 61 MET 72 A LEU 73 n 62 LEU 73 A LYS 74 n 63 LYS 74 A ILE 75 n 64 ILE 75 A ILE 76 n 65 ILE 76 A VAL 77 n 66 VAL 77 A ASN 78 n 67 ASN 78 A SER 79 n 68 SER 79 A PHE 80 n 69 PHE 80 A LYS 81 n 70 LYS 81 A ASN 82 n 71 ASN 82 A MET 83 n 72 MET 83 A VAL 84 n 73 VAL 84 A ASN 85 n 74 ASN 85 A THR 86 n 75 THR 86 A PHE 87 n 76 PHE 87 A VAL 88 n 77 VAL 88 A PRO 89 n 78 PRO 89 A SER 90 n 79 SER 90 A GLY 91 n 80 GLY 91 A LYS 92 n 81 LYS 92 A VAL 93 n 82 VAL 93 A MET 94 n 83 MET 94 A GLN 95 n 84 GLN 95 A MET 96 n 85 MET 96 A VAL 97 n 86 VAL 97 A ASP 98 n 87 ASP 98 A GLN 99 n 88 GLN 99 A LYS 100 n 89 LYS 100 A LEU 101 n 90 LEU 101 A PRO 102 n 91 PRO 102 A ASP 103 n 92 ASP 103 A LEU 104 n 93 LEU 104 A LEU 105 n 94 LEU 105 A GLY 106 n 95 GLY 106 A GLN 107 n 96 GLN 107 A PHE 108 n 97 PHE 108 A SER 109 n 98 SER 109 A GLY 110 n 99 GLY 110 A PRO 111 n 100 PRO 111 A TYR 112 n 101 TYR 112 A GLU 113 n 102 GLU 113 A GLU 114 n 103 GLU 114 A GLU 115 n 104 GLU 115 A MET 116 n 105 MET 116 A LYS 117 n 106 LYS 117 A GLY 118 n 107 GLY 118 A ILE 119 n 108 ILE 119 A ALA 120 n 109 ALA 120 A ASP 121 n 110 ASP 121 A VAL 122 n 111 VAL 122 A THR 123 n 112 THR 123 A GLU 124 n 113 GLU 124 A ILE 125 n 114 ILE 125 A PRO 126 n 115 PRO 126 A LEU 127 n 116 LEU 127 A GLY 128 n 117 GLY 128 A GLU 129 n 118 GLU 129 A ILE 130 n 119 ILE 130 A ILE 131 n 120 ILE 131 A SER 132 n 121 SER 132 A PHE 133 n 122 PHE 133 A ASN 134 n 123 ASN 134 A ILE 135 n 124 ILE 135 A PHE 136 n 125 PHE 136 A TYR 137 n 126 TYR 137 A GLU 138 n 127 GLU 138 A LEU 139 n 128 LEU 139 A PHE 140 n 129 PHE 140 A THR 141 n 130 THR 141 A MET 142 n 131 MET 142 A ALA 143 n 132 ALA 143 A THR 144 n 133 THR 144 A SER 145 n 134 SER 145 A ILE 146 n 135 ILE 146 A ILE 147 n 136 ILE 147 A THR 148 n 137 THR 148 A GLU 149 n 138 GLU 149 A ASP 150 n 139 ASP 150 A LYS 151 n 140 LYS 151 A LYS 152 n 141 LYS 152 A GLY 153 n 142 GLY 153 A HIS 154 n 143 HIS 154 A LEU 155 n 144 LEU 155 A LEU 156 n 145 LEU 156 A HIS 157 n 146 HIS 157 A VAL 158 n 147 VAL 158 A ARG 159 n 148 ARG 159 A ASN 160 n 149 ASN 160 A MET 161 n 150 MET 161 A ASP 162 n 151 ASP 162 A PHE 163 n 152 PHE 163 A GLY 164 n 153 GLY 164 A ILE 165 n 154 ILE 165 A PHE 166 n 155 PHE 166 A LEU 167 n 156 LEU 167 A GLY 168 n 157 GLY 168 A TRP 169 n 158 TRP 169 A ASN 170 n 159 ASN 170 A ILE 171 n 160 ILE 171 A ASN 172 n 161 ASN 172 A ASN 173 n 162 ASN 173 A ASN 174 n 163 ASN 174 A THR 175 n 164 THR 175 A TRP 176 n 165 TRP 176 A VAL 177 n 166 VAL 177 A ILE 178 n 167 ILE 178 A THR 179 n 168 THR 179 A GLU 180 n 169 GLU 180 A GLU 181 n 170 GLU 181 A LEU 182 n 171 LEU 182 A LYS 183 n 172 LYS 183 A PRO 184 n 173 PRO 184 A LEU 185 n 174 LEU 185 A THR 186 n 175 THR 186 A VAL 187 n 176 VAL 187 A ASN 188 n 177 ASN 188 A LEU 189 n 178 LEU 189 A ASP 190 n 179 ASP 190 A PHE 191 n 180 PHE 191 A GLN 192 n 181 GLN 192 A ARG 193 n 182 ARG 193 A ASN 194 n 183 ASN 194 A SER 195 n 184 SER 195 A LYS 196 n 185 LYS 196 A THR 197 n 186 THR 197 A VAL 198 n 187 VAL 198 A PHE 199 n 188 PHE 199 A LYS 200 n 189 LYS 200 A ALA 201 n 190 ALA 201 A THR 202 n 191 THR 202 A SER 203 n 192 SER 203 A PHE 204 n 193 PHE 204 A ALA 205 n 194 ALA 205 A GLY 206 n 195 GLY 206 A TYR 207 n 196 TYR 207 A VAL 208 n 197 VAL 208 A GLY 209 n 198 GLY 209 A MET 210 n 199 MET 210 A LEU 211 n 200 LEU 211 A THR 212 n 201 THR 212 A GLY 213 n 202 GLY 213 A PHE 214 n 203 PHE 214 A LYS 215 n 204 LYS 215 A PRO 216 n 205 PRO 216 A GLY 217 n 206 GLY 217 A GLN 218 n 207 GLN 218 A PHE 219 n 208 PHE 219 A SER 220 n 209 SER 220 A LEU 221 n 210 LEU 221 A THR 222 n 211 THR 222 A LEU 223 n 212 LEU 223 A ASN 224 n 213 ASN 224 A GLU 225 n 214 GLU 225 A ARG 226 n 215 ARG 226 A PHE 227 n 216 PHE 227 A SER 228 n 217 SER 228 A MET 229 n 218 MET 229 A ASN 230 n 219 ASN 230 A GLY 231 n 220 GLY 231 A GLY 232 n 221 GLY 232 A TYR 233 n 222 TYR 233 A LEU 234 n 223 LEU 234 A GLY 235 n 224 GLY 235 A LEU 236 n 225 LEU 236 A LEU 237 n 226 LEU 237 A GLU 238 n 227 GLU 238 A TRP 239 n 228 TRP 239 A ILE 240 n 229 ILE 240 A LEU 241 n 230 LEU 241 A GLY 242 n 231 GLY 242 A LYS 243 n 232 LYS 243 A LYS 244 n 233 LYS 244 A ASP 245 n 234 ASP 245 A ALA 246 n 235 ALA 246 A SER 247 n 236 SER 247 A TRP 248 n 237 TRP 248 A ILE 249 n 238 ILE 249 A GLY 250 n 239 GLY 250 A PHE 251 n 240 PHE 251 A ILE 252 n 241 ILE 252 A THR 253 n 242 THR 253 A ARG 254 n 243 ARG 254 A SER 255 n 244 SER 255 A VAL 256 n 245 VAL 256 A LEU 257 n 246 LEU 257 A GLU 258 n 247 GLU 258 A ASN 259 n 248 ASN 259 A ALA 260 n 249 ALA 260 A THR 261 n 250 THR 261 A SER 262 n 251 SER 262 A TYR 263 n 252 TYR 263 A GLU 264 n 253 GLU 264 A GLU 265 n 254 GLU 265 A ALA 266 n 255 ALA 266 A LYS 267 n 256 LYS 267 A ASN 268 n 257 ASN 268 A ILE 269 n 258 ILE 269 A LEU 270 n 259 LEU 270 A ALA 271 n 260 ALA 271 A LYS 272 n 261 LYS 272 A THR 273 n 262 THR 273 A LYS 274 n 263 LYS 274 A LEU 275 n 264 LEU 275 A LEU 276 n 265 LEU 276 A ALA 277 n 266 ALA 277 A PRO 278 n 267 PRO 278 A ALA 279 n 268 ALA 279 A TYR 280 n 269 TYR 280 A PHE 281 n 270 PHE 281 A ILE 282 n 271 ILE 282 A LEU 283 n 272 LEU 283 A GLY 284 n 273 GLY 284 A GLY 285 n 274 GLY 285 A ASN 286 n 275 ASN 286 A GLN 287 n 276 GLN 287 A SER 288 n 277 SER 288 A GLY 289 n 278 GLY 289 A GLU 290 n 279 GLU 290 A GLY 291 n 280 GLY 291 A CYS 292 n 281 CYS 292 A VAL 293 n 282 VAL 293 A ILE 294 n 283 ILE 294 A THR 295 n 284 THR 295 A ARG 296 n 285 ARG 296 A GLU 297 n 286 GLU 297 A ARG 298 n 287 ARG 298 A LYS 299 n 288 LYS 299 A ASP 300 n 289 ASP 300 A SER 301 n 290 SER 301 A LEU 302 n 291 LEU 302 A ASP 303 n 292 ASP 303 A ILE 304 n 293 ILE 304 A TYR 305 n 294 TYR 305 A GLU 306 n 295 GLU 306 A LEU 307 n 296 LEU 307 A ASP 308 n 297 ASP 308 A PRO 309 n 298 PRO 309 A LYS 310 n 299 LYS 310 A GLN 311 n 300 GLN 311 A GLY 312 n 301 GLY 312 A ARG 313 n 302 ARG 313 A TRP 314 n 303 TRP 314 A TYR 315 n 304 TYR 315 A VAL 316 n 305 VAL 316 A VAL 317 n 306 VAL 317 A GLN 318 n 307 GLN 318 A THR 319 n 308 THR 319 A ASN 320 n 309 ASN 320 A TYR 321 n 310 TYR 321 A ASP 322 n 311 ASP 322 A ARG 323 n 312 ARG 323 A TRP 324 n 313 TRP 324 A LYS 325 n 314 LYS 325 A ASN 326 n 315 ASN 326 A PRO 327 n 316 PRO 327 A LEU 328 n 317 LEU 328 A PHE 329 n 318 PHE 329 A LEU 330 n 319 LEU 330 A ASP 331 n 320 ASP 331 A ASP 332 n 321 ASP 332 A ARG 333 n 322 ARG 333 A ARG 334 n 323 ARG 334 A THR 335 n 324 THR 335 A PRO 336 n 325 PRO 336 A ALA 337 n 326 ALA 337 A GLN 338 n 327 GLN 338 A THR 339 n 328 THR 339 A CYS 340 n 329 CYS 340 A LEU 341 n 330 LEU 341 A LYS 342 n 331 LYS 342 A ARG 343 n 332 ARG 343 A THR 344 n 333 THR 344 A THR 345 n 334 THR 345 A GLN 346 n 335 GLN 346 A GLU 347 n 336 GLU 347 A SER 348 n 337 SER 348 A LEU 349 n 338 LEU 349 A SER 350 n 339 SER 350 A PHE 351 n 340 PHE 351 A ALA 352 n 341 ALA 352 A THR 353 n 342 THR 353 A LEU 354 n 343 LEU 354 A TYR 355 n 344 TYR 355 A ASP 356 n 345 ASP 356 A ILE 357 n 346 ILE 357 A LEU 358 n 347 LEU 358 A SER 359 n 348 SER 359 A THR 360 n 349 THR 360 A LYS 361 n 350 LYS 361 A PRO 362 n 351 PRO 362 A VAL 363 n 352 VAL 363 A LEU 364 n 353 LEU 364 A ASN 365 n 354 ASN 365 A LYS 366 n 355 LYS 366 A LEU 367 n 356 LEU 367 A THR 368 n 357 THR 368 A VAL 369 n 358 VAL 369 A PHE 370 n 359 PHE 370 A THR 371 n 360 THR 371 A ALA 372 n 361 ALA 372 A LEU 373 n 362 LEU 373 A MET 374 n 363 MET 374 A ASP 375 n 364 ASP 375 A VAL 376 n 365 VAL 376 A THR 377 n 366 THR 377 A LYS 378 n 367 LYS 378 A ASN 379 n 368 ASN 379 A HIS 380 n 369 HIS 380 A TYR 381 n 370 TYR 381 A GLU 382 n 371 GLU 382 A ALA 383 n 372 ALA 383 A TYR 384 n 373 TYR 384 A LEU 385 n 374 LEU 385 A ARG 386 n 375 ARG 386 A ASP 387 n 376 ASP 387 A CYS 388 n 377 CYS 388 A PRO 389 n 378 PRO 389 A ASP 390 n 379 ASP 390 A PRO 391 n 380 PRO 391 A CYS 392 n 381 CYS 392 A VAL 393 n 382 VAL 393 A GLY 394 n 383 GLY 394 A TRP 395 n 384 TRP 395 A author_defined_assembly 1 monomeric author_and_software_defined_assembly PISA 2 dimeric 11950 25 29540 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 45 A N GLY 34 A O LEU 385 A O LEU 374 A O GLU 382 A O GLU 371 A N LEU 373 A N LEU 362 A O ALA 372 A O ALA 361 A N ARG 159 A N ARG 148 A O ASP 162 A O ASP 151 A N MET 142 A N MET 131 A N SER 145 A N SER 134 A O GLN 318 A O GLN 307 A N ILE 52 A N ILE 41 A O GLN 192 A O GLN 181 A N PHE 191 A N PHE 180 A O VAL 198 A O VAL 187 A N LYS 200 A N LYS 189 A O PHE 214 A O PHE 203 A N LYS 215 A N LYS 204 A O PHE 219 A O PHE 208 A N THR 222 A N THR 211 A O ILE 282 A O ILE 271 A N PHE 281 A N PHE 270 A O ILE 294 A O ILE 283 A N THR 295 A N THR 284 A O ASP 303 A O ASP 292 A N ASN 170 A N ASN 159 A O THR 175 A O THR 164 1 A HOH 599 K HOH 1 A ASP 12 A ASP 1 1 Y 1 A ARG 13 A ARG 2 1 Y 1 A HIS 14 A HIS 3 1 Y 1 A HIS 15 A HIS 4 1 Y 1 A HIS 16 A HIS 5 1 Y 1 A HIS 17 A HIS 6 1 Y 1 A HIS 18 A HIS 7 1 Y 1 A HIS 19 A HIS 8 1 Y 1 A LYS 20 A LYS 9 1 Y 1 A LEU 21 A LEU 10 1 Y 1 A GLN 22 A GLN 11 1 Y 1 A HIS 23 A HIS 12 1 Y 1 A ALA 24 A ALA 13 1 Y 1 A PRO 25 A PRO 14 1 Y 1 A PRO 26 A PRO 15 1 Y 1 A D OE1 HO6 GLN NAG 218 1 1.57 A 1 A A O O HOH HOH 530 642 1.96 1 A A O O HOH HOH 656 775 2.03 1 A A O O HOH HOH 711 724 2.12 1 A A O O HOH HOH 718 770 2.13 1 A A O O HOH HOH 547 780 2.15 1 A A ARG GLU 296 297 149.93 1 A LEU 139 -137.76 -36.70 1 A GLN 218 -123.53 -64.14 1 A GLN 218 -123.50 -64.30 1 A ASP 300 -170.46 -176.68 1 A THR 319 -110.09 -123.51 1 A THR 345 75.28 162.31 0.1584 0.1222 0.1240 1.400 37.391 3490 69316 5.03 86.96 0.11 1 FREE R-VALUE 1.35 SAD 15.58 0.90 1.11 1.400 37.391 303 3483 203 0 2977 0.008 3361 1.174 4597 15.920 1319 0.078 540 0.007 553 0.2578 0.1663 1.4192 70 1339 45.00 0.2525 0.1582 1.4395 85 1595 53.00 0.2082 0.1464 1.4610 97 1816 60.00 0.1986 0.1458 1.4838 108 1911 63.00 0.1847 0.1370 1.5081 102 2050 68.00 0.1814 0.1374 1.5341 126 2165 72.00 0.2033 0.1300 1.5620 123 2273 76.00 0.1795 0.1239 1.5921 132 2450 81.00 0.1799 0.1225 1.6246 141 2569 85.00 0.1914 0.1208 1.6599 136 2671 89.00 0.1630 0.1135 1.6985 149 2731 91.00 0.1660 0.1134 1.7410 144 2848 93.00 0.1463 0.1092 1.7881 157 2902 97.00 0.1557 0.1072 1.8407 160 3034 100.00 0.1494 0.1076 1.9001 158 3003 100.00 0.1373 0.1022 1.9680 160 3042 100.00 0.1627 0.1017 2.0468 159 3000 100.00 0.1492 0.0968 2.1399 160 3069 100.00 0.1425 0.0968 2.2527 159 3009 100.00 0.1506 0.0959 2.3938 159 3022 100.00 0.1402 0.1075 2.5786 162 3065 100.00 0.1502 0.1180 2.8381 159 3041 100.00 0.1542 0.1298 3.2485 161 3066 100.00 0.1479 0.1293 4.0920 161 3058 100.00 0.1732 0.1607 37.4047 162 3097 99.00 1.4 37.391 5U81 69316 1 27.8 3.7 99 1 refinement PHENIX 1.10.1_2155 data reduction HKL-2000 data scaling HKL-2000 phasing AutoSol N Acid ceramidase (ASAH1, aCDase) from naked mole rat, Cys143Ala, uncleaved 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 7 N N 8 N N 9 N N A PRO 57 A PRO 46 HELX_P A ARG 61 A ARG 50 5 AA1 5 A TRP 62 A TRP 51 HELX_P A VAL 88 A VAL 77 1 AA2 27 A GLY 91 A GLY 80 HELX_P A LYS 100 A LYS 89 1 AA3 10 A LYS 100 A LYS 89 HELX_P A GLY 106 A GLY 95 1 AA4 7 A PRO 111 A PRO 100 HELX_P A GLU 124 A GLU 113 1 AA5 14 A PRO 126 A PRO 115 HELX_P A TYR 137 A TYR 126 1 AA6 12 A VAL 177 A VAL 166 HELX_P A LYS 183 A LYS 172 1 AA7 7 A GLY 231 A GLY 220 HELX_P A LEU 241 A LEU 230 1 AA8 11 A TRP 248 A TRP 237 HELX_P A ALA 260 A ALA 249 1 AA9 13 A SER 262 A SER 251 HELX_P A THR 273 A THR 262 1 AB1 12 A ASP 308 A ASP 297 HELX_P A GLY 312 A GLY 301 5 AB2 5 A ARG 333 A ARG 322 HELX_P A THR 345 A THR 334 1 AB3 13 A GLN 346 A GLN 335 HELX_P A LEU 349 A LEU 338 5 AB4 4 A SER 350 A SER 339 HELX_P A SER 359 A SER 348 1 AB5 10 disulf 2.122 A CYS 31 A SG CYS 20 1_555 A CYS 340 A SG CYS 329 1_555 disulf 2.080 A CYS 388 A SG CYS 377 1_555 A CYS 392 A SG CYS 381 1_555 covale 1.466 one N-Glycosylation A ASN 173 A ND2 ASN 162 1_555 B NAG 1 B C1 NAG 1_555 covale 1.428 one N-Glycosylation A ASN 259 A ND2 ASN 248 1_555 C NAG 1 C C1 NAG 1_555 covale 1.448 one N-Glycosylation A ASN 286 A ND2 ASN 275 1_555 D NAG 1 D C1 NAG 1_555 covale 1.432 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.449 both B NAG 1 B O6 NAG 1_555 B FUC 6 B C1 FUC 1_555 covale 1.434 both B NAG 2 B O4 NAG 1_555 B BMA 3 B C1 BMA 1_555 covale 1.441 both B BMA 3 B O3 BMA 1_555 B MAN 4 B C1 MAN 1_555 covale 1.441 both B BMA 3 B O6 BMA 1_555 B MAN 5 B C1 MAN 1_555 covale 1.425 both C NAG 1 C O4 NAG 1_555 C NAG 2 C C1 NAG 1_555 covale 1.433 both C NAG 2 C O4 NAG 1_555 C BMA 3 C C1 BMA 1_555 covale 1.438 both C BMA 3 C O6 BMA 1_555 C MAN 4 C C1 MAN 1_555 covale 1.437 both C MAN 4 C O3 MAN 1_555 C MAN 5 C C1 MAN 1_555 covale 1.441 both D NAG 1 D O4 NAG 1_555 D NAG 2 D C1 NAG 1_555 HYDROLASE ceramidase, ceramide, ntn-hydrolase, HYDROLASE A TYR 36 A TYR 25 1 A PRO 37 A PRO 26 0.13 A GLY 110 A GLY 99 1 A PRO 111 A PRO 100 4.24 A LYS 361 A LYS 350 1 A PRO 362 A PRO 351 9.73 A ASP 390 A ASP 379 1 A PRO 391 A PRO 380 -1.44 A0A0P6JG37_HETGA UNP 1 22 A0A0P6JG37 QHAPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKGPMLKIIVNSFKNMVNTFVPSGKVMQMVDQKL PDLLGQFSGPYEEEMKGIADVTEIPLGEIISFNIFYELFTMCTSIITEDKKGHLLHVRNMDFGIFLGWNINNNTWVITEE LKPLTVNLDFQRNSKTVFKATSFAGYVGMLTGFKPGQFSLTLNERFSMNGGYLGLLEWILGKKDASWIGFITRSVLENAT SYEEAKNILAKTKLLAPAYFILGGNQSGEGCVITRERKDSLDIYELDPKQGRWYVVQTNYDRWKNPLFLDDRRTPAQTCL KRTTQENLSFATLYDILSTKPVLNKLTVFTALMDVTKNHYEAYLRDCPDPCVGW 22 395 5U81 22 395 A0A0P6JG37 A 1 11 384 1 expression tag ASP 12 5U81 A A0A0P6JG37 UNP 1 1 expression tag ARG 13 5U81 A A0A0P6JG37 UNP 2 1 expression tag HIS 14 5U81 A A0A0P6JG37 UNP 3 1 expression tag HIS 15 5U81 A A0A0P6JG37 UNP 4 1 expression tag HIS 16 5U81 A A0A0P6JG37 UNP 5 1 expression tag HIS 17 5U81 A A0A0P6JG37 UNP 6 1 expression tag HIS 18 5U81 A A0A0P6JG37 UNP 7 1 expression tag HIS 19 5U81 A A0A0P6JG37 UNP 8 1 expression tag LYS 20 5U81 A A0A0P6JG37 UNP 9 1 expression tag LEU 21 5U81 A A0A0P6JG37 UNP 10 1 CYS engineered mutation ALA 143 5U81 A A0A0P6JG37 UNP 143 132 1 ASN engineered mutation SER 348 5U81 A A0A0P6JG37 UNP 348 337 6 8 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 43 A TYR 32 A PRO 46 A PRO 35 A HIS 380 A HIS 369 A ARG 386 A ARG 375 A THR 368 A THR 357 A ASP 375 A ASP 364 A LEU 155 A LEU 144 A PHE 163 A PHE 152 A THR 141 A THR 130 A GLU 149 A GLU 138 A TYR 315 A TYR 304 A GLN 318 A GLN 307 A TRP 49 A TRP 38 A ASN 53 A ASN 42 A THR 186 A THR 175 A ARG 193 A ARG 182 A LYS 196 A LYS 185 A PHE 204 A PHE 193 A THR 212 A THR 201 A LYS 215 A LYS 204 A PHE 219 A PHE 208 A GLU 225 A GLU 214 A ALA 279 A ALA 268 A GLY 284 A GLY 273 A GLY 291 A GLY 280 A ARG 296 A ARG 285 A SER 301 A SER 290 A GLU 306 A GLU 295 A TRP 169 A TRP 158 A ASN 170 A ASN 159 A THR 175 A THR 164 A TRP 176 A TRP 165 5 C 1 2 1