0.018640 0.000000 0.000000 0.000000 0.014395 0.000000 0.000000 0.000000 0.011829 0.000000 0.000000 0.000000 Weikum, E.R. Ortlund, E.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 53.649 69.469 84.536 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C N 493 N C N 494 N C N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing UK J. Mol. Biol. JMOBAK 0070 1089-8638 428 4981 4992 10.1016/j.jmb.2016.10.025 27984042 A Structural Investigation into Oct4 Regulation by Orphan Nuclear Receptors, Germ Cell Nuclear Factor (GCNF), and Liver Receptor Homolog-1 (LRH-1). 2016 10.2210/pdb5krb/pdb pdb_00005krb 80 1 CCD 2016-01-06 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.0 1.0 22-ID APS 1.0 SYNCHROTRON APS BEAMLINE 22-ID 4996.268 DNA (5'-D(*AP*GP*AP*GP*GP*TP*CP*AP*AP*GP*GP*CP*TP*AP*GP*A)-3') 1 syn polymer 9747.570 Nuclear receptor subfamily 6 group A member 1 C104S 2 man polymer 4800.115 DNA (5'-D(*TP*CP*TP*AP*GP*CP*CP*TP*TP*GP*AP*CP*CP*TP*CP*T)-3') 1 syn polymer 65.409 ZINC ION 4 syn non-polymer 18.015 water 43 nat water Germ cell nuclear factor,mGCNF,Retinoid receptor-related testis-specific receptor,RTR no no (DA)(DG)(DA)(DG)(DG)(DT)(DC)(DA)(DA)(DG)(DG)(DC)(DT)(DA)(DG)(DA) AGAGGTCAAGGCTAGA A polydeoxyribonucleotide no no QRTCLICGDRATGLHYGIISCEGCKGFFKRSISNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP GGRN QRTCLICGDRATGLHYGIISCEGCKGFFKRSISNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP GGRN B,G polypeptide(L) no no (DT)(DC)(DT)(DA)(DG)(DC)(DC)(DT)(DT)(DG)(DA)(DC)(DC)(DT)(DC)(DT) TCTAGCCTTGACCTCT E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Mouse sample 1 84 Nr6a1, Gcnf 10090 Mus musculus 511693 Escherichia coli BL21 pLysS pMCSG7 Biological sequence LIC MBP 1 2.75 55.21 VAPOR DIFFUSION, HANGING DROP 0.1M Tris pH 8.5, 20% PEG 3350, 3% glycerol 291 13.048 1 20 A 105 E 104 -1.990 A_DA105:DT104_E 1 -17.491 0.249 0.329 -0.146 17.963 1 19 A 106 E 103 4.031 A_DG106:DC103_E 2 -15.386 -0.004 0.625 -0.059 -2.994 1 20 A 107 E 102 -2.908 A_DA107:DT102_E 3 -21.856 0.237 0.169 -0.116 2.969 1 19 A 108 E 101 6.334 A_DG108:DC101_E 4 -12.583 -0.251 0.131 -0.210 -23.237 1 19 A 109 E 100 4.517 A_DG109:DC100_E 5 -10.023 -0.376 -0.076 -0.126 -24.977 1 20 A 110 E 99 -0.538 A_DT110:DA99_E 6 -11.654 -0.113 0.964 0.066 -2.950 1 19 A 111 E 98 4.827 A_DC111:DG98_E 7 4.204 0.380 -0.074 -0.135 16.223 1 20 A 112 E 97 5.129 A_DA112:DT97_E 8 -12.931 0.020 0.432 0.004 4.500 1 20 A 113 E 96 0.726 A_DA113:DT96_E 9 -26.160 0.270 0.230 -0.173 2.157 1 19 A 114 E 95 2.946 A_DG114:DC95_E 10 -6.913 -0.078 -0.015 -0.131 -19.168 1 19 A 115 E 94 3.703 A_DG115:DC94_E 11 -12.556 -0.416 -0.245 -0.102 -14.152 1 19 A 116 E 93 -0.405 A_DC116:DG93_E 12 -11.734 0.188 0.611 -0.108 -1.786 1 20 A 117 E 92 5.239 A_DT117:DA92_E 13 6.830 0.179 0.047 -0.091 8.295 1 20 A 118 E 91 -0.040 A_DA118:DT91_E 14 -28.201 0.216 0.644 -0.080 1.326 1 19 A 119 E 90 1.589 A_DG119:DC90_E 15 -18.493 0.004 0.341 0.080 6.415 A 120 E 89 -28.325 A_DA120:DT89_E 16 -18.510 2.589 0.627 0.151 3.190 33.808 A A 105 106 4.792 E E 104 103 3.216 2.784 0.914 -0.011 AA_DA105DG106:DC103DT104_EE 1 -0.547 0.942 33.692 -0.459 -1.658 3.672 40.371 A A 106 107 -6.005 E E 103 102 3.661 -4.137 -0.411 -0.356 AA_DG106DA107:DT102DC103_EE 2 0.604 -0.877 40.163 0.008 0.672 2.943 34.845 A A 107 108 14.354 E E 102 101 3.166 8.514 0.577 -0.554 AA_DA107DG108:DC101DT102_EE 3 -0.049 0.083 33.820 -2.152 -0.971 3.906 36.376 A A 108 109 -1.419 E E 101 100 3.902 -0.886 -0.421 -0.970 AA_DG108DG109:DC100DC101_EE 4 1.355 -2.171 36.341 -1.407 0.899 3.484 35.386 A A 109 110 -0.590 E E 100 99 3.401 -0.357 -0.727 -0.912 AA_DG109DT110:DA99DC100_EE 5 -6.437 10.646 34.812 -1.445 0.190 3.362 36.331 A A 110 111 5.270 E E 99 98 3.025 3.260 1.418 1.447 AA_DT110DC111:DG98DA99_EE 6 7.540 -12.191 35.421 1.871 -1.232 3.118 34.324 A A 111 112 2.351 E E 98 97 3.019 1.380 -0.544 1.371 AA_DC111DA112:DT97DG98_EE 7 -6.354 10.829 33.721 2.119 -0.020 3.478 39.792 A A 112 113 -6.997 E E 97 96 3.448 -4.752 -0.729 -0.281 AA_DA112DA113:DT96DT97_EE 8 -1.268 1.867 39.500 0.173 0.915 3.033 35.349 A A 113 114 14.992 E E 96 95 3.334 9.005 0.345 -0.854 AA_DA113DG114:DC95DT96_EE 9 1.926 -3.207 34.166 -2.723 -0.286 3.854 36.763 A A 114 115 1.623 E E 95 94 3.889 1.023 -0.379 -0.960 AA_DG114DG115:DC94DC95_EE 10 0.672 -1.065 36.743 -1.687 0.709 3.235 34.681 A A 115 116 2.271 E E 94 93 3.186 1.345 -0.675 -0.494 AA_DG115DC116:DG93DC94_EE 11 -6.833 11.536 33.996 -1.033 0.092 3.270 32.883 A A 116 117 -1.202 E E 93 92 3.168 -0.677 0.982 0.531 AA_DC116DT117:DA92DG93_EE 12 5.146 -9.126 32.482 1.052 -0.864 3.008 40.735 A A 117 118 -13.192 E E 92 91 3.231 -9.081 -1.206 1.332 AA_DT117DA118:DT91DA92_EE 13 -5.950 8.644 39.321 2.889 1.094 3.355 34.038 A A 118 119 8.739 E E 91 90 3.457 5.091 0.367 -0.585 AA_DA118DG119:DC90DT91_EE 14 3.030 -5.200 33.533 -1.850 -0.121 3.362 51.435 A A 119 120 1.223 E E 90 89 3.239 1.059 -1.357 -0.740 AA_DG119DA120:DT89DC90_EE 15 -6.519 7.529 51.038 -0.926 1.112 pdbx_audit_support pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Database references Author supporting evidence Author supporting evidence Data collection Database references Refinement description 1 0 2016-11-09 1 1 2017-01-04 1 2 2017-04-05 1 3 2017-09-20 1 4 2019-12-25 1 5 2024-03-06 1 6 2024-04-03 _pdbx_audit_support.funding_organization _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession United States National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) 1R01DK095750-01 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 1F31GM113397-01A1 N RCSB Y RCSB 2016-07-07 REL REL 1 B O HOH 314 9.95 ZN ZINC ION HOH water 10090 Mus musculus sample 1 16 10090 Mus musculus sample 1 16 Previous low resolution structure Other experimental model ZN 598 4 ZN ZN 201 B ZN 599 4 ZN ZN 202 B ZN 598 4 ZN ZN 201 G ZN 599 4 ZN ZN 202 G HOH 5 5 HOH HOH 201 A HOH 2 5 HOH HOH 202 A HOH 32 5 HOH HOH 203 A HOH 16 5 HOH HOH 204 A HOH 17 5 HOH HOH 205 A HOH 26 5 HOH HOH 206 A HOH 40 5 HOH HOH 207 A HOH 37 5 HOH HOH 208 A HOH 7 5 HOH HOH 209 A HOH 38 5 HOH HOH 210 A HOH 4 5 HOH HOH 211 A HOH 6 5 HOH HOH 301 B HOH 11 5 HOH HOH 302 B HOH 12 5 HOH HOH 303 B HOH 10 5 HOH HOH 304 B HOH 25 5 HOH HOH 305 B HOH 14 5 HOH HOH 306 B HOH 33 5 HOH HOH 307 B HOH 22 5 HOH HOH 308 B HOH 8 5 HOH HOH 309 B HOH 24 5 HOH HOH 310 B HOH 36 5 HOH HOH 311 B HOH 31 5 HOH HOH 312 B HOH 43 5 HOH HOH 313 B HOH 41 5 HOH HOH 314 B HOH 20 5 HOH HOH 201 E HOH 19 5 HOH HOH 202 E HOH 9 5 HOH HOH 203 E HOH 15 5 HOH HOH 204 E HOH 21 5 HOH HOH 205 E HOH 29 5 HOH HOH 206 E HOH 30 5 HOH HOH 207 E HOH 28 5 HOH HOH 208 E HOH 3 5 HOH HOH 209 E HOH 1 5 HOH HOH 301 G HOH 23 5 HOH HOH 302 G HOH 34 5 HOH HOH 303 G HOH 18 5 HOH HOH 304 G HOH 27 5 HOH HOH 305 G HOH 13 5 HOH HOH 306 G HOH 42 5 HOH HOH 307 G HOH 35 5 HOH HOH 308 G HOH 39 5 HOH HOH 309 G DA 105 n 1 DA 105 A DG 106 n 2 DG 106 A DA 107 n 3 DA 107 A DG 108 n 4 DG 108 A DG 109 n 5 DG 109 A DT 110 n 6 DT 110 A DC 111 n 7 DC 111 A DA 112 n 8 DA 112 A DA 113 n 9 DA 113 A DG 114 n 10 DG 114 A DG 115 n 11 DG 115 A DC 116 n 12 DC 116 A DT 117 n 13 DT 117 A DA 118 n 14 DA 118 A DG 119 n 15 DG 119 A DA 120 n 16 DA 120 A GLN 72 n 1 GLN 72 B ARG 73 n 2 ARG 73 B THR 74 n 3 THR 74 B CYS 75 n 4 CYS 75 B LEU 76 n 5 LEU 76 B ILE 77 n 6 ILE 77 B CYS 78 n 7 CYS 78 B GLY 79 n 8 GLY 79 B ASP 80 n 9 ASP 80 B ARG 81 n 10 ARG 81 B ALA 82 n 11 ALA 82 B THR 83 n 12 THR 83 B GLY 84 n 13 GLY 84 B LEU 85 n 14 LEU 85 B HIS 86 n 15 HIS 86 B TYR 87 n 16 TYR 87 B GLY 88 n 17 GLY 88 B ILE 89 n 18 ILE 89 B ILE 90 n 19 ILE 90 B SER 91 n 20 SER 91 B CYS 92 n 21 CYS 92 B GLU 93 n 22 GLU 93 B GLY 94 n 23 GLY 94 B CYS 95 n 24 CYS 95 B LYS 96 n 25 LYS 96 B GLY 97 n 26 GLY 97 B PHE 98 n 27 PHE 98 B PHE 99 n 28 PHE 99 B LYS 100 n 29 LYS 100 B ARG 101 n 30 ARG 101 B SER 102 n 31 SER 102 B ILE 103 n 32 ILE 103 B SER 104 n 33 SER 104 B ASN 105 n 34 ASN 105 B LYS 106 n 35 LYS 106 B ARG 107 n 36 ARG 107 B VAL 108 n 37 VAL 108 B TYR 109 n 38 TYR 109 B ARG 110 n 39 ARG 110 B CYS 111 n 40 CYS 111 B SER 112 n 41 SER 112 B ARG 113 n 42 ARG 113 B ASP 114 n 43 ASP 114 B LYS 115 n 44 LYS 115 B ASN 116 n 45 ASN 116 B CYS 117 n 46 CYS 117 B VAL 118 n 47 VAL 118 B MET 119 n 48 MET 119 B SER 120 n 49 SER 120 B ARG 121 n 50 ARG 121 B LYS 122 n 51 LYS 122 B GLN 123 n 52 GLN 123 B ARG 124 n 53 ARG 124 B ASN 125 n 54 ASN 125 B ARG 126 n 55 ARG 126 B CYS 127 n 56 CYS 127 B GLN 128 n 57 GLN 128 B TYR 129 n 58 TYR 129 B CYS 130 n 59 CYS 130 B ARG 131 n 60 ARG 131 B LEU 132 n 61 LEU 132 B LEU 133 n 62 LEU 133 B LYS 134 n 63 LYS 134 B CYS 135 n 64 CYS 135 B LEU 136 n 65 LEU 136 B GLN 137 n 66 GLN 137 B MET 138 n 67 MET 138 B GLY 139 n 68 GLY 139 B MET 140 n 69 MET 140 B ASN 141 n 70 ASN 141 B ARG 142 n 71 ARG 142 B LYS 143 n 72 LYS 143 B ALA 144 n 73 ALA 144 B ILE 145 n 74 ILE 145 B n 75 146 B n 76 147 B n 77 148 B n 78 149 B n 79 150 B n 80 151 B n 81 152 B n 82 153 B n 83 154 B n 84 155 B DT 89 n 1 DT 89 E DC 90 n 2 DC 90 E DT 91 n 3 DT 91 E DA 92 n 4 DA 92 E DG 93 n 5 DG 93 E DC 94 n 6 DC 94 E DC 95 n 7 DC 95 E DT 96 n 8 DT 96 E DT 97 n 9 DT 97 E DG 98 n 10 DG 98 E DA 99 n 11 DA 99 E DC 100 n 12 DC 100 E DC 101 n 13 DC 101 E DT 102 n 14 DT 102 E DC 103 n 15 DC 103 E DT 104 n 16 DT 104 E n 1 72 G n 2 73 G THR 74 n 3 THR 74 G CYS 75 n 4 CYS 75 G LEU 76 n 5 LEU 76 G ILE 77 n 6 ILE 77 G CYS 78 n 7 CYS 78 G GLY 79 n 8 GLY 79 G ASP 80 n 9 ASP 80 G ARG 81 n 10 ARG 81 G ALA 82 n 11 ALA 82 G THR 83 n 12 THR 83 G GLY 84 n 13 GLY 84 G LEU 85 n 14 LEU 85 G HIS 86 n 15 HIS 86 G TYR 87 n 16 TYR 87 G GLY 88 n 17 GLY 88 G ILE 89 n 18 ILE 89 G ILE 90 n 19 ILE 90 G SER 91 n 20 SER 91 G CYS 92 n 21 CYS 92 G GLU 93 n 22 GLU 93 G GLY 94 n 23 GLY 94 G CYS 95 n 24 CYS 95 G LYS 96 n 25 LYS 96 G GLY 97 n 26 GLY 97 G PHE 98 n 27 PHE 98 G PHE 99 n 28 PHE 99 G LYS 100 n 29 LYS 100 G ARG 101 n 30 ARG 101 G SER 102 n 31 SER 102 G ILE 103 n 32 ILE 103 G SER 104 n 33 SER 104 G ASN 105 n 34 ASN 105 G LYS 106 n 35 LYS 106 G ARG 107 n 36 ARG 107 G VAL 108 n 37 VAL 108 G TYR 109 n 38 TYR 109 G ARG 110 n 39 ARG 110 G CYS 111 n 40 CYS 111 G SER 112 n 41 SER 112 G ARG 113 n 42 ARG 113 G ASP 114 n 43 ASP 114 G LYS 115 n 44 LYS 115 G ASN 116 n 45 ASN 116 G CYS 117 n 46 CYS 117 G VAL 118 n 47 VAL 118 G MET 119 n 48 MET 119 G SER 120 n 49 SER 120 G ARG 121 n 50 ARG 121 G LYS 122 n 51 LYS 122 G GLN 123 n 52 GLN 123 G ARG 124 n 53 ARG 124 G ASN 125 n 54 ASN 125 G ARG 126 n 55 ARG 126 G CYS 127 n 56 CYS 127 G GLN 128 n 57 GLN 128 G TYR 129 n 58 TYR 129 G CYS 130 n 59 CYS 130 G ARG 131 n 60 ARG 131 G LEU 132 n 61 LEU 132 G LEU 133 n 62 LEU 133 G LYS 134 n 63 LYS 134 G CYS 135 n 64 CYS 135 G LEU 136 n 65 LEU 136 G GLN 137 n 66 GLN 137 G MET 138 n 67 MET 138 G GLY 139 n 68 GLY 139 G MET 140 n 69 MET 140 G ASN 141 n 70 ASN 141 G ARG 142 n 71 ARG 142 G LYS 143 n 72 LYS 143 G ALA 144 n 73 ALA 144 G ILE 145 n 74 ILE 145 G ARG 146 n 75 ARG 146 G GLU 147 n 76 GLU 147 G ASP 148 n 77 ASP 148 G GLY 149 n 78 GLY 149 G MET 150 n 79 MET 150 G PRO 151 n 80 PRO 151 G GLY 152 n 81 GLY 152 G GLY 153 n 82 GLY 153 G ARG 154 n 83 ARG 154 G ASN 155 n 84 ASN 155 G author_and_software_defined_assembly PISA 4 tetrameric 5320 -30 13200 B CYS 75 B SG CYS 4 1_555 B ZN 201 E ZN ZN 1_555 B CYS 78 B SG CYS 7 1_555 108.4 B CYS 75 B SG CYS 4 1_555 B ZN 201 E ZN ZN 1_555 B CYS 92 B SG CYS 21 1_555 110.9 B CYS 78 B SG CYS 7 1_555 B ZN 201 E ZN ZN 1_555 B CYS 92 B SG CYS 21 1_555 105.0 B CYS 75 B SG CYS 4 1_555 B ZN 201 E ZN ZN 1_555 B CYS 95 B SG CYS 24 1_555 111.7 B CYS 78 B SG CYS 7 1_555 B ZN 201 E ZN ZN 1_555 B CYS 95 B SG CYS 24 1_555 116.4 B CYS 92 B SG CYS 21 1_555 B ZN 201 E ZN ZN 1_555 B CYS 95 B SG CYS 24 1_555 104.1 B CYS 111 B SG CYS 40 1_555 B ZN 202 F ZN ZN 1_555 B CYS 117 B SG CYS 46 1_555 106.1 B CYS 111 B SG CYS 40 1_555 B ZN 202 F ZN ZN 1_555 B CYS 127 B SG CYS 56 1_555 106.0 B CYS 117 B SG CYS 46 1_555 B ZN 202 F ZN ZN 1_555 B CYS 127 B SG CYS 56 1_555 107.4 B CYS 111 B SG CYS 40 1_555 B ZN 202 F ZN ZN 1_555 B CYS 130 B SG CYS 59 1_555 113.3 B CYS 117 B SG CYS 46 1_555 B ZN 202 F ZN ZN 1_555 B CYS 130 B SG CYS 59 1_555 115.4 B CYS 127 B SG CYS 56 1_555 B ZN 202 F ZN ZN 1_555 B CYS 130 B SG CYS 59 1_555 108.2 G CYS 75 D SG CYS 4 1_555 G ZN 201 G ZN ZN 1_555 G CYS 78 D SG CYS 7 1_555 106.7 G CYS 75 D SG CYS 4 1_555 G ZN 201 G ZN ZN 1_555 G CYS 92 D SG CYS 21 1_555 108.9 G CYS 78 D SG CYS 7 1_555 G ZN 201 G ZN ZN 1_555 G CYS 92 D SG CYS 21 1_555 105.2 G CYS 75 D SG CYS 4 1_555 G ZN 201 G ZN ZN 1_555 G CYS 95 D SG CYS 24 1_555 111.8 G CYS 78 D SG CYS 7 1_555 G ZN 201 G ZN ZN 1_555 G CYS 95 D SG CYS 24 1_555 115.6 G CYS 92 D SG CYS 21 1_555 G ZN 201 G ZN ZN 1_555 G CYS 95 D SG CYS 24 1_555 108.3 G CYS 111 D SG CYS 40 1_555 G ZN 202 H ZN ZN 1_555 G CYS 117 D SG CYS 46 1_555 113.0 G CYS 111 D SG CYS 40 1_555 G ZN 202 H ZN ZN 1_555 G CYS 127 D SG CYS 56 1_555 109.6 G CYS 117 D SG CYS 46 1_555 G ZN 202 H ZN ZN 1_555 G CYS 127 D SG CYS 56 1_555 109.7 G CYS 111 D SG CYS 40 1_555 G ZN 202 H ZN ZN 1_555 G CYS 130 D SG CYS 59 1_555 112.9 G CYS 117 D SG CYS 46 1_555 G ZN 202 H ZN ZN 1_555 G CYS 130 D SG CYS 59 1_555 106.2 G CYS 127 D SG CYS 56 1_555 G ZN 202 H ZN ZN 1_555 G CYS 130 D SG CYS 59 1_555 105.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N HIS 86 B N HIS 15 B O ILE 89 B O ILE 18 G N HIS 86 D N HIS 15 G O ILE 89 D O ILE 18 1 B ARG 146 B ARG 75 1 Y 1 B GLU 147 B GLU 76 1 Y 1 B ASP 148 B ASP 77 1 Y 1 B GLY 149 B GLY 78 1 Y 1 B MET 150 B MET 79 1 Y 1 B PRO 151 B PRO 80 1 Y 1 B GLY 152 B GLY 81 1 Y 1 B GLY 153 B GLY 82 1 Y 1 B ARG 154 B ARG 83 1 Y 1 B ASN 155 B ASN 84 1 Y 1 G GLN 72 D GLN 1 1 Y 1 G ARG 73 D ARG 2 1 Y 1 A A O O HOH HOH 210 211 2.13 1 B ILE 77 -93.66 -60.58 1 B ARG 113 -135.25 -116.49 1 G ARG 113 -140.71 -128.12 1 G ASN 116 -145.85 23.14 163.510 61.9231 36.750 0.2683 0.2156 0.2183 2.1010 37.9440 910 17318 18228 4.9900 95.8300 0.2600 1 FREE R-VALUE 1.360 MOLECULAR REPLACEMENT 33.9700 0.9000 1.1100 Previous low resolution structure ML FLAT BULK SOLVENT MODEL 2.1010 37.9440 43 1941 51.78 54.58 4 650 1244 188 0.003 1983 0.565 2775 0.036 295 0.002 246 18.841 1107 0.3400 0.3117 2.2112 108 2037 2145 7 81.0000 0.3248 0.2914 2.3498 123 2365 2488 7 93.0000 0.3065 0.2767 2.5312 133 2524 2657 7 99.0000 0.3243 0.2662 2.7858 135 2555 2690 7 100.0000 0.3453 0.2816 3.1887 135 2556 2691 7 100.0000 0.2944 0.2063 4.0168 134 2574 2708 7 98.0000 0.2096 0.1687 37.9497 142 2707 2849 7 99.0000 46.640 2.100 50.000 5KRB 18322 0.152 0.069 0.167 1.695 1 17.342 8.900 95317 5.200 96.200 0.656 2.100 2.180 1486 0.690 0.371 0.758 0.909 1 3.500 0 80.200 0.566 2.180 2.260 1641 0.798 0.306 0.646 1.036 1 3.800 0 87.900 0.466 2.260 2.370 1785 0.845 0.251 0.532 1.160 1 4.000 0 95.400 0.404 2.370 2.490 1866 0.904 0.210 0.457 1.346 1 4.300 0 99.100 0.376 2.490 2.650 1872 0.929 0.186 0.421 1.495 1 4.700 0 99.900 0.403 2.650 2.850 1894 0.937 0.184 0.444 1.542 1 5.600 0 99.800 0.305 2.850 3.140 1896 0.975 0.131 0.332 1.772 1 6.400 0 99.700 0.153 3.140 3.590 1903 0.991 0.070 0.169 2.067 1 6.400 0 99.800 0.130 3.590 4.520 1939 0.982 0.057 0.143 2.176 1 6.400 0 99.800 0.127 4.520 50.000 2040 0.978 0.057 0.140 2.073 1 6.200 0 99.400 refinement PHENIX 1.10.1_2155 data scaling HKL-2000 data extraction PDB_EXTRACT 3.20 phasing PHASER model building Coot data reduction HKL-2000 N GCNF DNA Binding Domain - Oct4 DR0 Complex 1 N N 2 N N 3 N N 2 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N B CYS 92 B CYS 21 HELX_P B ASN 105 B ASN 34 1 AA1 14 B GLN 123 B GLN 52 HELX_P B ARG 126 B ARG 55 5 AA2 4 B CYS 127 B CYS 56 HELX_P B GLY 139 B GLY 68 1 AA3 13 B ASN 141 B ASN 70 HELX_P B ILE 145 B ILE 74 5 AA4 5 G CYS 92 D CYS 21 HELX_P G ASN 105 D ASN 34 1 AA5 14 G GLN 123 D GLN 52 HELX_P G ARG 126 D ARG 55 5 AA6 4 G CYS 127 D CYS 56 HELX_P G GLY 139 D GLY 68 1 AA7 13 G ASN 141 D ASN 70 HELX_P G ILE 145 D ILE 74 5 AA8 5 metalc 2.353 B CYS 75 B SG CYS 4 1_555 B ZN 201 E ZN ZN 1_555 metalc 2.289 B CYS 78 B SG CYS 7 1_555 B ZN 201 E ZN ZN 1_555 metalc 2.288 B CYS 92 B SG CYS 21 1_555 B ZN 201 E ZN ZN 1_555 metalc 2.391 B CYS 95 B SG CYS 24 1_555 B ZN 201 E ZN ZN 1_555 metalc 2.488 B CYS 111 B SG CYS 40 1_555 B ZN 202 F ZN ZN 1_555 metalc 2.350 B CYS 117 B SG CYS 46 1_555 B ZN 202 F ZN ZN 1_555 metalc 2.245 B CYS 127 B SG CYS 56 1_555 B ZN 202 F ZN ZN 1_555 metalc 2.363 B CYS 130 B SG CYS 59 1_555 B ZN 202 F ZN ZN 1_555 metalc 2.413 G CYS 75 D SG CYS 4 1_555 G ZN 201 G ZN ZN 1_555 metalc 2.354 G CYS 78 D SG CYS 7 1_555 G ZN 201 G ZN ZN 1_555 metalc 2.433 G CYS 92 D SG CYS 21 1_555 G ZN 201 G ZN ZN 1_555 metalc 2.452 G CYS 95 D SG CYS 24 1_555 G ZN 201 G ZN ZN 1_555 metalc 2.391 G CYS 111 D SG CYS 40 1_555 G ZN 202 H ZN ZN 1_555 metalc 2.559 G CYS 117 D SG CYS 46 1_555 G ZN 202 H ZN ZN 1_555 metalc 2.250 G CYS 127 D SG CYS 56 1_555 G ZN 202 H ZN ZN 1_555 metalc 2.453 G CYS 130 D SG CYS 59 1_555 G ZN 202 H ZN ZN 1_555 hydrog WATSON-CRICK A DA 105 A N1 DA 1 1_555 E DT 104 C N3 DT 16 1_555 hydrog WATSON-CRICK A DA 105 A N6 DA 1 1_555 E DT 104 C O4 DT 16 1_555 hydrog WATSON-CRICK A DG 106 A N1 DG 2 1_555 E DC 103 C N3 DC 15 1_555 hydrog WATSON-CRICK A DG 106 A N2 DG 2 1_555 E DC 103 C O2 DC 15 1_555 hydrog WATSON-CRICK A DG 106 A O6 DG 2 1_555 E DC 103 C N4 DC 15 1_555 hydrog WATSON-CRICK A DA 107 A N1 DA 3 1_555 E DT 102 C N3 DT 14 1_555 hydrog WATSON-CRICK A DA 107 A N6 DA 3 1_555 E DT 102 C O4 DT 14 1_555 hydrog WATSON-CRICK A DG 108 A N1 DG 4 1_555 E DC 101 C N3 DC 13 1_555 hydrog WATSON-CRICK A DG 108 A N2 DG 4 1_555 E DC 101 C O2 DC 13 1_555 hydrog WATSON-CRICK A DG 108 A O6 DG 4 1_555 E DC 101 C N4 DC 13 1_555 hydrog WATSON-CRICK A DG 109 A N1 DG 5 1_555 E DC 100 C N3 DC 12 1_555 hydrog WATSON-CRICK A DG 109 A N2 DG 5 1_555 E DC 100 C O2 DC 12 1_555 hydrog WATSON-CRICK A DG 109 A O6 DG 5 1_555 E DC 100 C N4 DC 12 1_555 hydrog WATSON-CRICK A DT 110 A N3 DT 6 1_555 E DA 99 C N1 DA 11 1_555 hydrog WATSON-CRICK A DT 110 A O4 DT 6 1_555 E DA 99 C N6 DA 11 1_555 hydrog WATSON-CRICK A DC 111 A N3 DC 7 1_555 E DG 98 C N1 DG 10 1_555 hydrog WATSON-CRICK A DC 111 A N4 DC 7 1_555 E DG 98 C O6 DG 10 1_555 hydrog WATSON-CRICK A DC 111 A O2 DC 7 1_555 E DG 98 C N2 DG 10 1_555 hydrog WATSON-CRICK A DA 112 A N1 DA 8 1_555 E DT 97 C N3 DT 9 1_555 hydrog WATSON-CRICK A DA 112 A N6 DA 8 1_555 E DT 97 C O4 DT 9 1_555 hydrog WATSON-CRICK A DA 113 A N1 DA 9 1_555 E DT 96 C N3 DT 8 1_555 hydrog WATSON-CRICK A DA 113 A N6 DA 9 1_555 E DT 96 C O4 DT 8 1_555 hydrog WATSON-CRICK A DG 114 A N1 DG 10 1_555 E DC 95 C N3 DC 7 1_555 hydrog WATSON-CRICK A DG 114 A N2 DG 10 1_555 E DC 95 C O2 DC 7 1_555 hydrog WATSON-CRICK A DG 114 A O6 DG 10 1_555 E DC 95 C N4 DC 7 1_555 hydrog WATSON-CRICK A DG 115 A N1 DG 11 1_555 E DC 94 C N3 DC 6 1_555 hydrog WATSON-CRICK A DG 115 A N2 DG 11 1_555 E DC 94 C O2 DC 6 1_555 hydrog WATSON-CRICK A DG 115 A O6 DG 11 1_555 E DC 94 C N4 DC 6 1_555 hydrog WATSON-CRICK A DC 116 A N3 DC 12 1_555 E DG 93 C N1 DG 5 1_555 hydrog WATSON-CRICK A DC 116 A N4 DC 12 1_555 E DG 93 C O6 DG 5 1_555 hydrog WATSON-CRICK A DC 116 A O2 DC 12 1_555 E DG 93 C N2 DG 5 1_555 hydrog WATSON-CRICK A DT 117 A N3 DT 13 1_555 E DA 92 C N1 DA 4 1_555 hydrog WATSON-CRICK A DT 117 A O4 DT 13 1_555 E DA 92 C N6 DA 4 1_555 hydrog WATSON-CRICK A DA 118 A N1 DA 14 1_555 E DT 91 C N3 DT 3 1_555 hydrog WATSON-CRICK A DA 118 A N6 DA 14 1_555 E DT 91 C O4 DT 3 1_555 hydrog WATSON-CRICK A DG 119 A N1 DG 15 1_555 E DC 90 C N3 DC 2 1_555 hydrog WATSON-CRICK A DG 119 A N2 DG 15 1_555 E DC 90 C O2 DC 2 1_555 hydrog WATSON-CRICK A DG 119 A O6 DG 15 1_555 E DC 90 C N4 DC 2 1_555 hydrog DA-DT PAIR A DA 120 A N6 DA 16 1_555 E DT 89 C O4 DT 1 1_555 transcription/dna Nuclear Receptor, Transcription Factor, DNA Binding, Development, Protein-DNA complex, transcription-dna complex 5KRB PDB 1 1 5KRB NR6A1_MOUSE UNP 2 72 Q64249 QRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP GGRN 5KRB PDB 3 1 5KRB 105 120 5KRB 105 120 5KRB A 1 1 16 72 155 5KRB 72 155 Q64249 B 2 1 84 89 104 5KRB 89 104 5KRB E 3 1 16 72 155 5KRB 72 155 Q64249 G 2 1 84 2 CYS engineered mutation SER 104 5KRB B Q64249 UNP 104 33 4 CYS engineered mutation SER 104 5KRB G Q64249 UNP 104 33 2 2 anti-parallel anti-parallel B LEU 85 B LEU 14 B HIS 86 B HIS 15 B ILE 89 B ILE 18 B ILE 90 B ILE 19 G GLY 84 D GLY 13 G HIS 86 D HIS 15 G ILE 89 D ILE 18 G SER 91 D SER 20 binding site for residue ZN B 201 B ZN 201 Software 4 binding site for residue ZN B 202 B ZN 202 Software 4 binding site for residue ZN G 201 G ZN 201 Software 4 binding site for residue ZN G 202 G ZN 202 Software 4 B CYS 75 B CYS 4 4 1_555 B CYS 78 B CYS 7 4 1_555 B CYS 92 B CYS 21 4 1_555 B CYS 95 B CYS 24 4 1_555 B CYS 111 B CYS 40 4 1_555 B CYS 117 B CYS 46 4 1_555 B CYS 127 B CYS 56 4 1_555 B CYS 130 B CYS 59 4 1_555 G CYS 75 D CYS 4 4 1_555 G CYS 78 D CYS 7 4 1_555 G CYS 92 D CYS 21 4 1_555 G CYS 95 D CYS 24 4 1_555 G CYS 111 D CYS 40 4 1_555 G CYS 117 D CYS 46 4 1_555 G CYS 127 D CYS 56 4 1_555 G CYS 130 D CYS 59 4 1_555 19 P 21 21 21