0.011110 0.000000 0.002410 -0.000000 0.034654 0.000000 0.000000 -0.000000 0.009477 0.000000 0.000000 0.000000 Zhang, Z. Zhang, T. Ding, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 102.240 90.000 90.007 28.857 107.973 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N O N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 R C N 278 N O N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N N Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N C N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N doub Y 292 N sing Y 293 N sing N 294 N sing Y 295 N sing Y 296 N doub N 297 N sing Y 298 N doub N 299 N sing Y 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing US Elife 2050-084X 3 e02687 e02687 10.7554/eLife.02687 24957337 Molecular mechanism for Rabex-5 GEF activation by Rabaptin-5 2014 10.2210/pdb4n3y/pdb pdb_00004n3y 100 1 CCD 2012-05-21 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL17U SSRF 1.0000 SYNCHROTRON SSRF BEAMLINE BL17U 5261.896 Rab5 GDP/GTP exchange factor UNP residues 630-672 1 man polymer 10701.068 Rab GTPase-binding effector protein 1 UNP residues 552-642 2 man polymer 18.015 water 187 nat water RAP1, Rabaptin-5-associated exchange factor for Rab5, Rabex-5 Rabaptin-4, Rabaptin-5, Rabaptin-5alpha, Renal carcinoma antigen NY-REN-17 no no GSNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEK GSNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEK A polypeptide(L) no no METRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAV LMQSREQVSEEL METRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAV LMQSREQVSEEL B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample RABEX5 9606 Homo sapiens 562 Escherichia coli BL21(DE3) codon plus plasmid pETDuet1 human sample RABEP1 9606 Homo sapiens 562 Escherichia coli BL21(DE3) codon plus plasmid pETDuet1 1 2.57 52.13 VAPOR DIFFUSION, HANGING DROP 0.15M MgAc2, 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Database references Refinement description Data collection Database references Refinement description 1 0 2014-07-23 1 1 2015-12-09 1 2 2017-11-15 1 3 2023-11-08 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y PDBJ 2013-10-08 REL REL HOH water 1X79 PDB experimental model HOH 26 3 HOH HOH 501 A HOH 63 3 HOH HOH 502 A HOH 81 3 HOH HOH 503 A HOH 83 3 HOH HOH 504 A HOH 91 3 HOH HOH 505 A HOH 98 3 HOH HOH 506 A HOH 106 3 HOH HOH 507 A HOH 113 3 HOH HOH 508 A HOH 123 3 HOH HOH 509 A HOH 136 3 HOH HOH 510 A HOH 137 3 HOH HOH 511 A HOH 142 3 HOH HOH 512 A HOH 143 3 HOH HOH 513 A HOH 146 3 HOH HOH 514 A HOH 152 3 HOH HOH 515 A HOH 153 3 HOH HOH 516 A HOH 159 3 HOH HOH 517 A HOH 161 3 HOH HOH 518 A HOH 165 3 HOH HOH 519 A HOH 166 3 HOH HOH 520 A HOH 169 3 HOH HOH 521 A HOH 173 3 HOH HOH 522 A HOH 178 3 HOH HOH 523 A HOH 186 3 HOH HOH 524 A HOH 4 3 HOH HOH 701 B HOH 5 3 HOH HOH 702 B HOH 7 3 HOH HOH 703 B HOH 9 3 HOH HOH 704 B HOH 10 3 HOH HOH 705 B HOH 12 3 HOH HOH 706 B HOH 16 3 HOH HOH 707 B HOH 23 3 HOH HOH 708 B HOH 28 3 HOH HOH 709 B HOH 30 3 HOH HOH 710 B HOH 32 3 HOH HOH 711 B HOH 33 3 HOH HOH 712 B HOH 34 3 HOH HOH 713 B HOH 35 3 HOH HOH 714 B HOH 38 3 HOH HOH 715 B HOH 41 3 HOH HOH 716 B HOH 42 3 HOH HOH 717 B HOH 43 3 HOH HOH 718 B HOH 44 3 HOH HOH 719 B HOH 45 3 HOH HOH 720 B HOH 46 3 HOH HOH 721 B HOH 47 3 HOH HOH 722 B HOH 50 3 HOH HOH 723 B HOH 51 3 HOH HOH 724 B HOH 53 3 HOH HOH 725 B HOH 57 3 HOH HOH 726 B HOH 61 3 HOH HOH 727 B HOH 62 3 HOH HOH 728 B HOH 64 3 HOH HOH 729 B HOH 65 3 HOH HOH 730 B HOH 67 3 HOH HOH 731 B HOH 69 3 HOH HOH 732 B HOH 72 3 HOH HOH 733 B HOH 74 3 HOH HOH 734 B HOH 78 3 HOH HOH 735 B HOH 79 3 HOH HOH 736 B HOH 84 3 HOH HOH 737 B HOH 88 3 HOH HOH 738 B HOH 89 3 HOH HOH 739 B HOH 92 3 HOH HOH 740 B HOH 95 3 HOH HOH 741 B HOH 99 3 HOH HOH 742 B HOH 100 3 HOH HOH 743 B HOH 102 3 HOH HOH 744 B HOH 103 3 HOH HOH 745 B HOH 104 3 HOH HOH 746 B HOH 107 3 HOH HOH 747 B HOH 108 3 HOH HOH 748 B HOH 109 3 HOH HOH 749 B HOH 112 3 HOH HOH 750 B HOH 114 3 HOH HOH 751 B HOH 115 3 HOH HOH 752 B HOH 118 3 HOH HOH 753 B HOH 120 3 HOH HOH 754 B HOH 121 3 HOH HOH 755 B HOH 124 3 HOH HOH 756 B HOH 127 3 HOH HOH 757 B HOH 128 3 HOH HOH 758 B HOH 129 3 HOH HOH 759 B HOH 130 3 HOH HOH 760 B HOH 131 3 HOH HOH 761 B HOH 132 3 HOH HOH 762 B HOH 133 3 HOH HOH 763 B HOH 134 3 HOH HOH 764 B HOH 141 3 HOH HOH 765 B HOH 148 3 HOH HOH 766 B HOH 151 3 HOH HOH 767 B HOH 154 3 HOH HOH 768 B HOH 156 3 HOH HOH 769 B HOH 160 3 HOH HOH 770 B HOH 167 3 HOH HOH 771 B HOH 170 3 HOH HOH 772 B HOH 171 3 HOH HOH 773 B HOH 172 3 HOH HOH 774 B HOH 175 3 HOH HOH 775 B HOH 179 3 HOH HOH 776 B HOH 180 3 HOH HOH 777 B HOH 181 3 HOH HOH 778 B HOH 183 3 HOH HOH 779 B HOH 184 3 HOH HOH 780 B HOH 185 3 HOH HOH 781 B HOH 187 3 HOH HOH 782 B HOH 1 3 HOH HOH 701 C HOH 2 3 HOH HOH 702 C HOH 3 3 HOH HOH 703 C HOH 6 3 HOH HOH 704 C HOH 8 3 HOH HOH 705 C HOH 11 3 HOH HOH 706 C HOH 13 3 HOH HOH 707 C HOH 14 3 HOH HOH 708 C HOH 15 3 HOH HOH 709 C HOH 17 3 HOH HOH 710 C HOH 18 3 HOH HOH 711 C HOH 19 3 HOH HOH 712 C HOH 20 3 HOH HOH 713 C HOH 21 3 HOH HOH 714 C HOH 22 3 HOH HOH 715 C HOH 24 3 HOH HOH 716 C HOH 25 3 HOH HOH 717 C HOH 27 3 HOH HOH 718 C HOH 29 3 HOH HOH 719 C HOH 31 3 HOH HOH 720 C HOH 36 3 HOH HOH 721 C HOH 37 3 HOH HOH 722 C HOH 39 3 HOH HOH 723 C HOH 40 3 HOH HOH 724 C HOH 48 3 HOH HOH 725 C HOH 49 3 HOH HOH 726 C HOH 52 3 HOH HOH 727 C HOH 54 3 HOH HOH 728 C HOH 55 3 HOH HOH 729 C HOH 56 3 HOH HOH 730 C HOH 58 3 HOH HOH 731 C HOH 59 3 HOH HOH 732 C HOH 60 3 HOH HOH 733 C HOH 66 3 HOH HOH 734 C HOH 68 3 HOH HOH 735 C HOH 70 3 HOH HOH 736 C HOH 71 3 HOH HOH 737 C HOH 73 3 HOH HOH 738 C HOH 75 3 HOH HOH 739 C HOH 76 3 HOH HOH 740 C HOH 77 3 HOH HOH 741 C HOH 80 3 HOH HOH 742 C HOH 82 3 HOH HOH 743 C HOH 85 3 HOH HOH 744 C HOH 86 3 HOH HOH 745 C HOH 87 3 HOH HOH 746 C HOH 90 3 HOH HOH 747 C HOH 93 3 HOH HOH 748 C HOH 94 3 HOH HOH 749 C HOH 96 3 HOH HOH 750 C HOH 97 3 HOH HOH 751 C HOH 101 3 HOH HOH 752 C HOH 105 3 HOH HOH 753 C HOH 110 3 HOH HOH 754 C HOH 111 3 HOH HOH 755 C HOH 116 3 HOH HOH 756 C HOH 117 3 HOH HOH 757 C HOH 119 3 HOH HOH 758 C HOH 122 3 HOH HOH 759 C HOH 125 3 HOH HOH 760 C HOH 126 3 HOH HOH 761 C HOH 135 3 HOH HOH 762 C HOH 138 3 HOH HOH 763 C HOH 139 3 HOH HOH 764 C HOH 140 3 HOH HOH 765 C HOH 144 3 HOH HOH 766 C HOH 145 3 HOH HOH 767 C HOH 147 3 HOH HOH 768 C HOH 149 3 HOH HOH 769 C HOH 150 3 HOH HOH 770 C HOH 155 3 HOH HOH 771 C HOH 157 3 HOH HOH 772 C HOH 158 3 HOH HOH 773 C HOH 162 3 HOH HOH 774 C HOH 163 3 HOH HOH 775 C HOH 164 3 HOH HOH 776 C HOH 168 3 HOH HOH 777 C HOH 174 3 HOH HOH 778 C HOH 176 3 HOH HOH 779 C HOH 177 3 HOH HOH 780 C HOH 182 3 HOH HOH 781 C n 1 411 A n 2 412 A n 3 413 A n 4 414 A n 5 415 A n 6 416 A n 7 417 A n 8 418 A GLN 419 n 9 GLN 419 A LEU 420 n 10 LEU 420 A ASN 421 n 11 ASN 421 A GLU 422 n 12 GLU 422 A ARG 423 n 13 ARG 423 A GLN 424 n 14 GLN 424 A GLU 425 n 15 GLU 425 A ARG 426 n 16 ARG 426 A ILE 427 n 17 ILE 427 A MET 428 n 18 MET 428 A ASN 429 n 19 ASN 429 A GLU 430 n 20 GLU 430 A ALA 431 n 21 ALA 431 A LYS 432 n 22 LYS 432 A LYS 433 n 23 LYS 433 A LEU 434 n 24 LEU 434 A GLU 435 n 25 GLU 435 A LYS 436 n 26 LYS 436 A ASP 437 n 27 ASP 437 A LEU 438 n 28 LEU 438 A ILE 439 n 29 ILE 439 A ASP 440 n 30 ASP 440 A TRP 441 n 31 TRP 441 A THR 442 n 32 THR 442 A ASP 443 n 33 ASP 443 A GLY 444 n 34 GLY 444 A ILE 445 n 35 ILE 445 A ALA 446 n 36 ALA 446 A ARG 447 n 37 ARG 447 A GLU 448 n 38 GLU 448 A VAL 449 n 39 VAL 449 A GLN 450 n 40 GLN 450 A ASP 451 n 41 ASP 451 A ILE 452 n 42 ILE 452 A VAL 453 n 43 VAL 453 A n 44 454 A n 45 455 A n 1 551 B GLU 552 n 2 GLU 552 B THR 553 n 3 THR 553 B ARG 554 n 4 ARG 554 B ASP 555 n 5 ASP 555 B GLN 556 n 6 GLN 556 B VAL 557 n 7 VAL 557 B LYS 558 n 8 LYS 558 B LYS 559 n 9 LYS 559 B LEU 560 n 10 LEU 560 B GLN 561 n 11 GLN 561 B LEU 562 n 12 LEU 562 B MET 563 n 13 MET 563 B LEU 564 n 14 LEU 564 B ARG 565 n 15 ARG 565 B GLN 566 n 16 GLN 566 B ALA 567 n 17 ALA 567 B ASN 568 n 18 ASN 568 B ASP 569 n 19 ASP 569 B GLN 570 n 20 GLN 570 B LEU 571 n 21 LEU 571 B GLU 572 n 22 GLU 572 B LYS 573 n 23 LYS 573 B THR 574 n 24 THR 574 B MET 575 n 25 MET 575 B LYS 576 n 26 LYS 576 B ASP 577 n 27 ASP 577 B LYS 578 n 28 LYS 578 B GLN 579 n 29 GLN 579 B GLU 580 n 30 GLU 580 B LEU 581 n 31 LEU 581 B GLU 582 n 32 GLU 582 B ASP 583 n 33 ASP 583 B PHE 584 n 34 PHE 584 B ILE 585 n 35 ILE 585 B LYS 586 n 36 LYS 586 B GLN 587 n 37 GLN 587 B SER 588 n 38 SER 588 B SER 589 n 39 SER 589 B GLU 590 n 40 GLU 590 B ASP 591 n 41 ASP 591 B SER 592 n 42 SER 592 B SER 593 n 43 SER 593 B HIS 594 n 44 HIS 594 B GLN 595 n 45 GLN 595 B ILE 596 n 46 ILE 596 B SER 597 n 47 SER 597 B ALA 598 n 48 ALA 598 B LEU 599 n 49 LEU 599 B VAL 600 n 50 VAL 600 B LEU 601 n 51 LEU 601 B ARG 602 n 52 ARG 602 B ALA 603 n 53 ALA 603 B GLN 604 n 54 GLN 604 B ALA 605 n 55 ALA 605 B SER 606 n 56 SER 606 B GLU 607 n 57 GLU 607 B ILE 608 n 58 ILE 608 B LEU 609 n 59 LEU 609 B LEU 610 n 60 LEU 610 B GLU 611 n 61 GLU 611 B GLU 612 n 62 GLU 612 B LEU 613 n 63 LEU 613 B GLN 614 n 64 GLN 614 B GLN 615 n 65 GLN 615 B GLY 616 n 66 GLY 616 B LEU 617 n 67 LEU 617 B SER 618 n 68 SER 618 B GLN 619 n 69 GLN 619 B ALA 620 n 70 ALA 620 B LYS 621 n 71 LYS 621 B ARG 622 n 72 ARG 622 B ASP 623 n 73 ASP 623 B VAL 624 n 74 VAL 624 B GLN 625 n 75 GLN 625 B GLU 626 n 76 GLU 626 B GLN 627 n 77 GLN 627 B MET 628 n 78 MET 628 B ALA 629 n 79 ALA 629 B VAL 630 n 80 VAL 630 B LEU 631 n 81 LEU 631 B MET 632 n 82 MET 632 B GLN 633 n 83 GLN 633 B SER 634 n 84 SER 634 B n 85 635 B n 86 636 B n 87 637 B n 88 638 B n 89 639 B n 90 640 B n 91 641 B n 92 642 B n 1 551 C GLU 552 n 2 GLU 552 C THR 553 n 3 THR 553 C ARG 554 n 4 ARG 554 C ASP 555 n 5 ASP 555 C GLN 556 n 6 GLN 556 C VAL 557 n 7 VAL 557 C LYS 558 n 8 LYS 558 C LYS 559 n 9 LYS 559 C LEU 560 n 10 LEU 560 C GLN 561 n 11 GLN 561 C LEU 562 n 12 LEU 562 C MET 563 n 13 MET 563 C LEU 564 n 14 LEU 564 C ARG 565 n 15 ARG 565 C GLN 566 n 16 GLN 566 C ALA 567 n 17 ALA 567 C ASN 568 n 18 ASN 568 C ASP 569 n 19 ASP 569 C GLN 570 n 20 GLN 570 C LEU 571 n 21 LEU 571 C GLU 572 n 22 GLU 572 C LYS 573 n 23 LYS 573 C THR 574 n 24 THR 574 C MET 575 n 25 MET 575 C LYS 576 n 26 LYS 576 C ASP 577 n 27 ASP 577 C LYS 578 n 28 LYS 578 C GLN 579 n 29 GLN 579 C GLU 580 n 30 GLU 580 C LEU 581 n 31 LEU 581 C GLU 582 n 32 GLU 582 C ASP 583 n 33 ASP 583 C PHE 584 n 34 PHE 584 C ILE 585 n 35 ILE 585 C LYS 586 n 36 LYS 586 C GLN 587 n 37 GLN 587 C SER 588 n 38 SER 588 C SER 589 n 39 SER 589 C GLU 590 n 40 GLU 590 C ASP 591 n 41 ASP 591 C SER 592 n 42 SER 592 C SER 593 n 43 SER 593 C HIS 594 n 44 HIS 594 C GLN 595 n 45 GLN 595 C ILE 596 n 46 ILE 596 C SER 597 n 47 SER 597 C ALA 598 n 48 ALA 598 C LEU 599 n 49 LEU 599 C VAL 600 n 50 VAL 600 C LEU 601 n 51 LEU 601 C ARG 602 n 52 ARG 602 C ALA 603 n 53 ALA 603 C GLN 604 n 54 GLN 604 C ALA 605 n 55 ALA 605 C SER 606 n 56 SER 606 C GLU 607 n 57 GLU 607 C ILE 608 n 58 ILE 608 C LEU 609 n 59 LEU 609 C LEU 610 n 60 LEU 610 C GLU 611 n 61 GLU 611 C GLU 612 n 62 GLU 612 C LEU 613 n 63 LEU 613 C GLN 614 n 64 GLN 614 C GLN 615 n 65 GLN 615 C GLY 616 n 66 GLY 616 C LEU 617 n 67 LEU 617 C SER 618 n 68 SER 618 C GLN 619 n 69 GLN 619 C ALA 620 n 70 ALA 620 C LYS 621 n 71 LYS 621 C ARG 622 n 72 ARG 622 C ASP 623 n 73 ASP 623 C VAL 624 n 74 VAL 624 C GLN 625 n 75 GLN 625 C GLU 626 n 76 GLU 626 C GLN 627 n 77 GLN 627 C MET 628 n 78 MET 628 C ALA 629 n 79 ALA 629 C VAL 630 n 80 VAL 630 C LEU 631 n 81 LEU 631 C MET 632 n 82 MET 632 C GLN 633 n 83 GLN 633 C SER 634 n 84 SER 634 C n 85 635 C n 86 636 C n 87 637 C n 88 638 C n 89 639 C n 90 640 C n 91 641 C n 92 642 C 2.6403 -2.5598 2.4721 3.0486 -2.8908 2.7457 -0.0254 0.1317 -0.0081 0.0644 0.0063 -0.0186 -0.0502 0.0155 0.0191 0.3202 0.0267 -0.1561 0.0536 -0.0106 0.0785 refined 0.2639 -928.7816 -60.3170 X-RAY DIFFRACTION 1.1954 -0.0532 2.4013 0.0292 -0.1084 4.8542 -0.0498 -0.0107 0.0628 -0.0186 -0.0305 0.0064 -0.0126 -0.0283 0.0803 0.2426 -0.0002 -0.1281 0.0344 0.0016 0.0689 refined 5.9162 -930.0035 -25.2492 X-RAY DIFFRACTION 0.5018 -0.3345 0.9920 0.2350 -0.6649 2.0207 -0.0369 0.0567 0.0627 -0.0227 -0.0528 -0.0180 0.0063 0.0830 0.0897 0.2491 0.0136 -0.1242 0.0408 -0.0056 0.0665 refined 12.8565 -928.3519 -26.9416 X-RAY DIFFRACTION A 419 A 453 X-RAY DIFFRACTION 1 A 501 A 524 X-RAY DIFFRACTION 1 B 552 B 634 X-RAY DIFFRACTION 2 B 701 B 782 X-RAY DIFFRACTION 2 C 552 C 634 X-RAY DIFFRACTION 3 C 701 C 781 X-RAY DIFFRACTION 3 author_and_software_defined_assembly PISA 3 trimeric 6270 -65 13590 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY 411 A GLY 1 1 Y 1 A SER 412 A SER 2 1 Y 1 A ASN 413 A ASN 3 1 Y 1 A LEU 414 A LEU 4 1 Y 1 A ASP 415 A ASP 5 1 Y 1 A LEU 416 A LEU 6 1 Y 1 A LEU 417 A LEU 7 1 Y 1 A SER 418 A SER 8 1 Y 1 A GLU 454 A GLU 44 1 Y 1 A LYS 455 A LYS 45 1 Y 1 B MET 551 B MET 1 1 Y 1 B ARG 635 B ARG 85 1 Y 1 B GLU 636 B GLU 86 1 Y 1 B GLN 637 B GLN 87 1 Y 1 B VAL 638 B VAL 88 1 Y 1 B SER 639 B SER 89 1 Y 1 B GLU 640 B GLU 90 1 Y 1 B GLU 641 B GLU 91 1 Y 1 B LEU 642 B LEU 92 1 Y 1 C MET 551 C MET 1 1 Y 1 C ARG 635 C ARG 85 1 Y 1 C GLU 636 C GLU 86 1 Y 1 C GLN 637 C GLN 87 1 Y 1 C VAL 638 C VAL 88 1 Y 1 C SER 639 C SER 89 1 Y 1 C GLU 640 C GLU 90 1 Y 1 C GLU 641 C GLU 91 1 Y 1 C LEU 642 C LEU 92 1 Y 162.730 58.5336 22.480 -1.3300 -0.0000 -1.5400 5.1800 0.0000 -3.2200 0.9610 0.9480 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: RESIDUAL ONLY 0.2345 0.1929 0.1950 2.2000 15.0300 691 13815 5.0000 97.2300 1.000 1.000 17.7970 0.1870 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1970 0.8000 0.8000 1.2000 1X79 MAXIMUM LIKELIHOOD MASK 2.2000 15.0300 187 1814 0 0 1627 0.014 0.019 1630 0.001 0.020 1639 1.374 1.980 2173 1.202 3.000 3779 4.661 5.000 198 42.895 27.000 90 20.955 15.000 366 19.014 15.000 11 0.087 0.200 250 0.004 0.020 1843 0.002 0.020 336 4.755 3.000 3269 34.993 5.000 72 41.078 5.000 3381 0.3540 0.2800 2.2600 53 816 869 20 83.2400 2.20 50.0 4N3Y 13816 0.060 1 21.2 3.4 97.7 0.280 2.20 2.28 3.4 13816 1 3.0 85.8 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.7.0029 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection HKL-2000 Crystal structure of Rabex-5CC and Rabaptin-5C21 complex 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N A GLN 419 A GLN 9 HELX_P A ILE 452 A ILE 42 1 1 34 B THR 553 B THR 3 HELX_P B SER 634 B SER 84 1 2 82 C THR 553 C THR 3 HELX_P C GLN 633 C GLN 83 1 3 81 ENDOCYTOSIS Rab5, Rabex-5, Rabaptin-5, GEF activity, endocytosis, early endosome RABX5_HUMAN UNP 1 630 Q9UJ41 NLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEK RABE1_HUMAN UNP 2 552 Q15276 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL MQSREQVSEEL 630 672 4N3Y 413 455 Q9UJ41 A 1 3 45 552 642 4N3Y 552 642 Q15276 B 2 2 92 552 642 4N3Y 552 642 Q15276 C 2 2 92 1 expression tag GLY 411 4N3Y A Q9UJ41 UNP 1 1 expression tag SER 412 4N3Y A Q9UJ41 UNP 2 2 expression tag MET 551 4N3Y B Q15276 UNP 1 3 expression tag MET 551 4N3Y C Q15276 UNP 1 5 C 1 2 1