0.00 6.823 -2.711 6.110 A O5' DT 1 ATOM A O5' DT 1 1 1.00 1 O 0.00 7.938 -1.871 6.464 A C5' DT 1 ATOM A C5' DT 1 1 1.00 1 C 0.00 7.452 -0.639 7.195 A C4' DT 1 ATOM A C4' DT 1 1 1.00 1 C 0.00 6.144 -0.280 6.693 A O4' DT 1 ATOM A O4' DT 1 1 1.00 1 O 0.00 7.285 -0.842 8.701 A C3' DT 1 ATOM A C3' DT 1 1 1.00 1 C 0.00 7.586 0.381 9.390 A O3' DT 1 ATOM A O3' DT 1 1 1.00 1 O 0.00 5.808 -1.150 8.845 A C2' DT 1 ATOM A C2' DT 1 1 1.00 1 C 0.00 5.190 -0.306 7.745 A C1' DT 1 ATOM A C1' DT 1 1 1.00 1 C 0.00 3.932 -0.849 7.204 A N1 DT 1 ATOM A N1 DT 1 1 1.00 1 N 0.00 2.869 0.009 7.039 A C2 DT 1 ATOM A C2 DT 1 1 1.00 1 C 0.00 2.921 1.195 7.319 A O2 DT 1 ATOM A O2 DT 1 1 1.00 1 O 0.00 1.736 -0.576 6.530 A N3 DT 1 ATOM A N3 DT 1 1 1.00 1 N 0.00 1.566 -1.902 6.178 A C4 DT 1 ATOM A C4 DT 1 1 1.00 1 C 0.00 0.487 -2.283 5.733 A O4 DT 1 ATOM A O4 DT 1 1 1.00 1 O 0.00 2.722 -2.745 6.378 A C5 DT 1 ATOM A C5 DT 1 1 1.00 1 C 0.00 2.633 -4.196 6.026 A C7 DT 1 ATOM A C7 DT 1 1 1.00 1 C 0.00 3.832 -2.184 6.874 A C6 DT 1 ATOM A C6 DT 1 1 1.00 1 C 0.00 8.463 -1.568 5.558 A H5' DT 1 ATOM A H5' DT 1 1 1.00 1 H 0.00 8.618 -2.428 7.109 A H5'' DT 1 ATOM A H5'' DT 1 1 1.00 1 H 0.00 8.147 0.184 7.027 A H4' DT 1 ATOM A H4' DT 1 1 1.00 1 H 0.00 7.894 -1.674 9.053 A H3' DT 1 ATOM A H3' DT 1 1 1.00 1 H 0.00 5.610 -2.209 8.687 A H2' DT 1 ATOM A H2' DT 1 1 1.00 1 H 0.00 5.438 -0.852 9.825 A H2'' DT 1 ATOM A H2'' DT 1 1 1.00 1 H 0.00 5.026 0.704 8.121 A H1' DT 1 ATOM A H1' DT 1 1 1.00 1 H 0.00 0.938 0.029 6.398 A H3 DT 1 ATOM A H3 DT 1 1 1.00 1 H 0.00 2.823 -4.798 6.915 A H71 DT 1 ATOM A H71 DT 1 1 1.00 1 H 0.00 3.375 -4.431 5.263 A H72 DT 1 ATOM A H72 DT 1 1 1.00 1 H 0.00 1.636 -4.417 5.644 A H73 DT 1 ATOM A H73 DT 1 1 1.00 1 H 0.00 4.705 -2.818 7.025 A H6 DT 1 ATOM A H6 DT 1 1 1.00 1 H 0.00 6.384 -2.961 6.926 A HO5' DT 1 ATOM A HO5' DT 1 1 1.00 1 H 0.00 8.546 0.352 10.679 A P DA 2 ATOM A P DA 1 2 1.00 1 P 0.00 9.828 0.994 10.293 A OP1 DA 2 ATOM A OP1 DA 1 2 1.00 1 O 0.00 8.551 -1.028 11.226 A OP2 DA 2 ATOM A OP2 DA 1 2 1.00 1 O 0.00 7.812 1.303 11.726 A O5' DA 2 ATOM A O5' DA 1 2 1.00 1 O 0.00 7.627 2.704 11.451 A C5' DA 2 ATOM A C5' DA 1 2 1.00 1 C 0.00 6.387 3.214 12.150 A C4' DA 2 ATOM A C4' DA 1 2 1.00 1 C 0.00 5.272 2.358 11.811 A O4' DA 2 ATOM A O4' DA 1 2 1.00 1 O 0.00 6.487 3.192 13.675 A C3' DA 2 ATOM A C3' DA 1 2 1.00 1 C 0.00 5.773 4.296 14.240 A O3' DA 2 ATOM A O3' DA 1 2 1.00 1 O 0.00 5.817 1.883 14.043 A C2' DA 2 ATOM A C2' DA 1 2 1.00 1 C 0.00 4.738 1.759 12.983 A C1' DA 2 ATOM A C1' DA 1 2 1.00 1 C 0.00 4.374 0.381 12.658 A N9 DA 2 ATOM A N9 DA 1 2 1.00 1 N 0.00 5.194 -0.720 12.626 A C8 DA 2 ATOM A C8 DA 1 2 1.00 1 C 0.00 4.577 -1.829 12.299 A N7 DA 2 ATOM A N7 DA 1 2 1.00 1 N 0.00 3.261 -1.433 12.101 A C5 DA 2 ATOM A C5 DA 1 2 1.00 1 C 0.00 2.116 -2.133 11.683 A C6 DA 2 ATOM A C6 DA 1 2 1.00 1 C 0.00 2.098 -3.444 11.435 A N6 DA 2 ATOM A N6 DA 1 2 1.00 1 N 0.00 0.973 -1.430 11.528 A N1 DA 2 ATOM A N1 DA 1 2 1.00 1 N 0.00 0.991 -0.115 11.777 A C2 DA 2 ATOM A C2 DA 1 2 1.00 1 C 0.00 2.002 0.654 12.174 A N3 DA 2 ATOM A N3 DA 1 2 1.00 1 N 0.00 3.122 -0.074 12.319 A C4 DA 2 ATOM A C4 DA 1 2 1.00 1 C 0.00 7.520 2.849 10.376 A H5' DA 2 ATOM A H5' DA 1 2 1.00 1 H 0.00 8.495 3.259 11.807 A H5'' DA 2 ATOM A H5'' DA 1 2 1.00 1 H 0.00 6.177 4.233 11.826 A H4' DA 2 ATOM A H4' DA 1 2 1.00 1 H 0.00 7.527 3.203 13.999 A H3' DA 2 ATOM A H3' DA 1 2 1.00 1 H 0.00 4.846 4.178 14.022 A HO3' DA 2 ATOM A HO3' DA 1 2 1.00 1 H 0.00 6.520 1.052 13.988 A H2' DA 2 ATOM A H2' DA 1 2 1.00 1 H 0.00 5.384 1.930 15.042 A H2'' DA 2 ATOM A H2'' DA 1 2 1.00 1 H 0.00 3.855 2.308 13.310 A H1' DA 2 ATOM A H1' DA 1 2 1.00 1 H 0.00 6.258 -0.676 12.851 A H8 DA 2 ATOM A H8 DA 1 2 1.00 1 H 0.00 1.243 -3.890 11.135 A H61 DA 2 ATOM A H61 DA 1 2 1.00 1 H 0.00 2.940 -3.991 11.547 A H62 DA 2 ATOM A H62 DA 1 2 1.00 1 H 0.00 0.044 0.398 11.635 A H2 DA 2 ATOM A H2 DA 1 2 1.00 1 H 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nishinaka, T. Ito, Y. Yokoyama, S. Shibata, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 94 6623 6628 10.1073/pnas.94.13.6623 9192615 An extended DNA structure through deoxyribose-base stacking induced by RecA protein. 1997 10.2210/pdb3rec/pdb pdb_00003rec 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 D(TA) REGION OF D(TACG) RECA PROTEIN-BOUND DNA 572.442 DNA (5'-D(*TP*A)-3') 1 syn polymer no no (DT)(DA) TA A polydeoxyribonucleotide n n database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Data collection 1 0 1997-10-22 1 1 2008-03-25 1 2 2011-07-13 1 3 2022-03-16 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site ENSEMBLE OF 10 STRUCTURES Y BNL 1997-04-17 REL LEAST OVERALL ENERGY 100 1 TRANSFERRED NOESY 7.1 303 K REFINEMENT DETAILS CAN BE FOUND IN THE MATERIAL AND METHODS SECTION OF THE ABOVE REFERENCE. simulated annealing BRUNGER refinement X-PLOR 3.1 structure solution X-PLOR 600 Bruker AMX600 T 1 n 1 DT 1 A A 2 n 2 DA 2 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 ESCHERICHIA COLI RECA PROTEIN-BOUND DNA, NMR, 1 STRUCTURE 1 N N DNA DEOXYRIBOSE-BASE STACKING, HOMOLOGOUS RECOMBINATION, HOMOLOGOUS PAIRING, DEOXYRIBONUCLEIC ACID, DNA 3REC PDB 1 3REC 1 2 3REC 1 2 3REC A 1 1 2 1 P 1