0.034497 0.000000 0.000000 0.000000 0.034497 0.000000 0.000000 0.000000 0.011407 0.00000 0.00000 0.00000 Venkadesh, S. Mandal, P.K. Gautham, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 28.988 28.988 87.662 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing US Biochem.Biophys.Res.Commun. BBRCA9 0146 0006-291X 407 307 312 10.1016/j.bbrc.2011.03.007 21397589 The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)(2) 2011 10.2210/pdb3qk4/pdb pdb_00003qk4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors IMAGE PLATE 2008-12-17 MARRESEARCH Mirrors SINGLE WAVELENGTH M x-ray 1 1.54179 1.0 1.54179 ROTATING ANODE BRUKER AXS MICROSTAR 4282.768 DNA (5'-D(*CP*GP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*CP*G)-3') 2 syn polymer 18.015 water 46 nat water no no (DC)(DG)(DC)(DG)(DG)(DG)(DT)(DA)(DC)(DC)(DC)(DG)(DC)(DG) CGCGGGTACCCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n n n 1 2.15 42.79 VAPOR DIFFUSION, HANGING DROP 6.99 The drop consist of 1mM DNA, 50mM buffer, 10mM BaCl2, 1mM Spermine equilibriated against 50% MPD, pH 6.99, VAPOR DIFFUSION, HANGING DROP, temperature 300K 300 16.056 1 19 A 1 B 14 -14.458 A_DC1:DG14_B 1 26.865 0.398 -2.160 -0.888 -16.873 1 A 2 B 13 -18.087 A_DG2:DC13_B 2 -6.820 -1.024 -0.275 -0.378 -8.672 1 19 A 3 B 12 -0.255 A_DC3:DG12_B 3 3.866 -0.050 -0.887 0.270 17.705 1 A 4 B 11 19.649 A_DG4:DC11_B 4 -13.237 -0.330 1.193 0.539 23.306 1 19 A 5 B 10 5.205 A_DG5:DC10_B 5 -26.081 0.455 1.443 -0.347 -15.281 A 6 B 9 -20.017 A_DG6:DC9_B 6 -14.629 0.152 -0.413 0.721 -7.247 1 20 A 7 B 8 -28.587 A_DT7:DA8_B 7 -14.893 -0.330 -0.345 0.185 4.163 1 A 9 B 6 -21.712 A_DC9:DG6_B 8 -7.810 -0.017 0.764 -0.347 2.159 1 A 10 B 5 -24.750 A_DC10:DG5_B 9 -22.368 -0.268 0.242 -0.060 -5.891 1 19 A 12 B 3 -3.714 A_DG12:DC3_B 10 -19.802 0.149 -0.442 0.237 12.187 1 19 A 13 B 2 -10.311 A_DC13:DG2_B 11 -10.008 0.139 -0.446 0.063 3.829 1 A 14 B 1 0.206 A_DG14:DC1_B 12 15.506 -0.115 0.668 0.434 3.400 64.381 A A 1 2 33.870 B B 14 13 4.421 34.457 -0.387 -0.924 AA_DC1DG2:DC13DG14_BB 1 -8.016 7.879 54.684 -2.812 -0.089 1.655 16.851 A A 2 3 10.115 B B 13 12 3.104 2.735 -0.349 -3.235 AA_DG2DC3:DG12DC13_BB 2 10.423 -38.552 12.974 -12.523 6.840 0.894 43.811 A A 3 4 28.182 B B 12 11 1.626 20.179 2.635 -0.152 AA_DC3DG4:DC11DG12_BB 3 -8.075 11.277 38.272 -1.000 -3.850 2.328 24.994 A A 4 5 19.629 B B 11 10 3.408 8.219 -0.071 -2.249 AA_DG4DG5:DC10DC11_BB 4 7.124 -17.012 22.537 -7.458 2.124 3.565 41.762 A A 5 6 10.593 B B 10 9 4.361 7.483 -2.843 -1.380 AA_DG5DG6:DC9DC10_BB 5 6.765 -9.576 40.578 -2.903 4.863 2.096 29.786 A A 6 7 29.595 B B 9 8 3.024 14.446 -1.372 -1.638 AA_DG6DT7:DA8DC9_BB 6 -6.814 13.960 25.223 -5.755 1.457 3.131 33.712 A A 9 10 -2.649 B B 6 5 2.999 -1.536 -0.446 -2.829 AA_DC9DC10:DG5DG6_BB 7 -0.874 1.508 33.667 -4.644 0.636 2.950 14.489 A A 12 13 -3.030 B B 3 2 3.363 -0.752 1.029 -1.174 AA_DG12DC13:DG2DC3_BB 8 -4.400 17.732 13.788 -3.991 -7.957 2.794 51.225 A A 13 14 8.271 B B 2 1 2.800 7.127 2.626 -0.940 AA_DC13DG14:DC1DG2_BB 9 3.015 -3.499 50.676 -1.510 -2.859 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Data collection Database references Refinement description 1 0 2011-03-02 1 1 2011-07-13 1 2 2024-03-20 1 3 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y PDBJ 2011-01-31 REL REL HOH water Chemically synthesized sample A-DNA fiber Model Other in silico model HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 1 2 HOH HOH 19 A HOH 3 2 HOH HOH 20 A HOH 6 2 HOH HOH 21 A HOH 5 2 HOH HOH 22 A HOH 8 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 10 2 HOH HOH 25 A HOH 13 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 12 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 45 2 HOH HOH 45 A HOH 2 2 HOH HOH 15 B HOH 4 2 HOH HOH 16 B HOH 7 2 HOH HOH 18 B HOH 19 2 HOH HOH 19 B HOH 20 2 HOH HOH 20 B HOH 21 2 HOH HOH 21 B HOH 22 2 HOH HOH 22 B HOH 23 2 HOH HOH 23 B HOH 11 2 HOH HOH 24 B HOH 25 2 HOH HOH 25 B HOH 26 2 HOH HOH 26 B HOH 9 2 HOH HOH 27 B HOH 14 2 HOH HOH 28 B HOH 28 2 HOH HOH 29 B HOH 30 2 HOH HOH 30 B HOH 33 2 HOH HOH 33 B HOH 34 2 HOH HOH 34 B HOH 35 2 HOH HOH 35 B HOH 42 2 HOH HOH 42 B HOH 43 2 HOH HOH 43 B HOH 44 2 HOH HOH 44 B HOH 46 2 HOH HOH 46 B DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DC 3 n 3 DC 3 A DG 4 n 4 DG 4 A DG 5 n 5 DG 5 A DG 6 n 6 DG 6 A DT 7 n 7 DT 7 A DA 8 n 8 DA 8 A DC 9 n 9 DC 9 A DC 10 n 10 DC 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DC 13 n 13 DC 13 A DG 14 n 14 DG 14 A DC 1 n 1 DC 1 B DG 2 n 2 DG 2 B DC 3 n 3 DC 3 B DG 4 n 4 DG 4 B DG 5 n 5 DG 5 B DG 6 n 6 DG 6 B DT 7 n 7 DT 7 B DA 8 n 8 DA 8 B DC 9 n 9 DC 9 B DC 10 n 10 DC 10 B DC 11 n 11 DC 11 B DG 12 n 12 DG 12 B DC 13 n 13 DC 13 B DG 14 n 14 DG 14 B 1 0.673 2 0.327 author_and_software_defined_assembly PISA 2 dimeric 1450 -1 5230 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -5.64 0.80 105.90 100.26 A A A O4' C1' C2' DC DC DC 1 1 1 N 1 4.12 0.30 108.30 112.42 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 16.85 1.20 119.70 136.55 A A A C3' O3' P DC DC DG 1 1 2 Y 1 -6.01 0.40 104.50 98.49 A A A O4' C4' C3' DG DG DG 2 2 2 N 1 7.63 1.20 115.70 123.33 A A A C5' C4' C3' DG DG DG 2 2 2 N 1 7.60 1.10 109.80 117.40 A A A C5' C4' O4' DG DG DG 2 2 2 N 1 -6.44 0.70 102.20 95.76 A A A C4' C3' C2' DG DG DG 2 2 2 N 1 -3.12 0.50 128.60 125.48 A A A N3 C4 C5 DG DG DG 2 2 2 N 1 4.52 0.60 126.00 130.52 A A A N3 C4 N9 DG DG DG 2 2 2 N 1 -3.18 0.40 104.50 101.32 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 -7.57 0.70 102.20 94.63 A A A C4' C3' C2' DC DC DC 3 3 3 N 1 5.19 0.30 108.30 113.49 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 3.33 0.50 113.10 116.43 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 -2.68 0.40 106.40 103.72 A A A C8 N9 C4 DG DG DG 4 4 4 N 1 8.78 1.20 119.70 128.48 A A A C3' O3' P DG DG DG 4 4 5 Y 1 4.45 0.50 106.80 111.25 A A A O4' C1' C2' DG DG DG 5 5 5 N 1 8.82 0.30 108.30 117.12 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 3.56 0.40 105.40 108.96 A A A N9 C4 C5 DG DG DG 5 5 5 N 1 -6.01 0.60 126.00 119.99 A A A N3 C4 N9 DG DG DG 5 5 5 N 1 6.60 0.90 116.20 122.80 A A A N1 C2 N2 DG DG DG 5 5 5 N 1 -6.30 0.70 119.90 113.60 A A A N3 C2 N2 DG DG DG 5 5 5 N 1 7.99 1.30 127.00 134.99 A A A C8 N9 C1' DG DG DG 5 5 5 N 1 -6.24 0.40 104.50 98.26 A A A O4' C4' C3' DG DG DG 6 6 6 N 1 9.60 1.10 109.80 119.40 A A A C5' C4' O4' DG DG DG 6 6 6 N 1 -6.99 0.70 102.20 95.21 A A A C4' C3' C2' DG DG DG 6 6 6 N 1 -4.85 0.80 102.40 97.55 A A A C3' C2' C1' DG DG DG 6 6 6 N 1 -6.49 0.80 105.90 99.41 A A A O4' C1' C2' DG DG DG 6 6 6 N 1 4.58 0.30 108.30 112.88 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -6.09 0.50 128.60 122.51 A A A N3 C4 C5 DG DG DG 6 6 6 N 1 5.50 0.60 118.80 124.30 A A A C4 C5 C6 DG DG DG 6 6 6 N 1 3.80 0.50 113.10 116.90 A A A N7 C8 N9 DG DG DG 6 6 6 N 1 -2.44 0.40 106.40 103.96 A A A C8 N9 C4 DG DG DG 6 6 6 N 1 8.33 0.60 126.00 134.33 A A A N3 C4 N9 DG DG DG 6 6 6 N 1 -7.50 0.60 130.40 122.90 A A A C6 C5 N7 DG DG DG 6 6 6 N 1 -11.77 1.30 127.00 115.23 A A A C8 N9 C1' DG DG DG 6 6 6 N 1 14.31 1.30 126.50 140.81 A A A C4 N9 C1' DG DG DG 6 6 6 N 1 -8.46 0.40 104.50 96.04 A A A O4' C4' C3' DT DT DT 7 7 7 N 1 -9.42 0.80 102.40 92.98 A A A C3' C2' C1' DT DT DT 7 7 7 N 1 -5.28 0.80 105.90 100.62 A A A O4' C1' C2' DT DT DT 7 7 7 N 1 6.19 0.60 119.90 126.09 A A A N3 C4 O4 DT DT DT 7 7 7 N 1 -4.63 0.70 124.90 120.27 A A A C5 C4 O4 DT DT DT 7 7 7 N 1 -8.51 0.70 102.20 93.69 A A A C4' C3' C2' DA DA DA 8 8 8 N 1 -6.81 0.80 105.90 99.09 A A A O4' C1' C2' DA DA DA 8 8 8 N 1 11.62 0.30 108.30 119.92 A A A O4' C1' N9 DA DA DA 8 8 8 N 1 4.12 0.50 110.60 114.72 A A A C2 N3 C4 DA DA DA 8 8 8 N 1 -11.27 1.80 127.70 116.43 A A A C8 N9 C1' DA DA DA 8 8 8 N 1 12.94 1.80 126.30 139.24 A A A C4 N9 C1' DA DA DA 8 8 8 N 1 3.70 0.50 121.00 124.70 A A A C5 C6 N1 DC DC DC 9 9 9 N 1 -4.76 0.70 120.20 115.44 A A A C5 C4 N4 DC DC DC 9 9 9 N 1 6.68 1.10 118.80 125.48 A A A C2 N1 C1' DC DC DC 9 9 9 N 1 -12.14 1.20 119.70 107.56 A A A C3' O3' P DC DC DC 9 9 10 Y 1 -3.79 0.40 104.50 100.71 A A A O4' C4' C3' DC DC DC 10 10 10 N 1 -6.26 0.80 102.40 96.14 A A A C3' C2' C1' DC DC DC 10 10 10 N 1 -5.28 0.80 105.90 100.62 A A A O4' C1' C2' DC DC DC 10 10 10 N 1 5.69 0.30 108.30 113.99 A A A O4' C1' N1 DC DC DC 10 10 10 N 1 -12.70 1.20 119.70 107.00 A A A C3' O3' P DC DC DC 10 10 11 Y 1 -6.59 0.90 105.70 99.11 A A A O5' P OP2 DC DC DC 11 11 11 N 1 -6.77 0.80 109.40 102.63 A A A O5' C5' C4' DC DC DC 11 11 11 N 1 -12.39 0.40 104.50 92.11 A A A O4' C4' C3' DC DC DC 11 11 11 N 1 -12.34 0.70 102.20 89.86 A A A C4' C3' C2' DC DC DC 11 11 11 N 1 -6.32 0.80 102.40 96.08 A A A C3' C2' C1' DC DC DC 11 11 11 N 1 -5.02 0.80 105.90 100.88 A A A O4' C1' C2' DC DC DC 11 11 11 N 1 -4.93 0.70 119.20 114.27 A A A N1 C2 N3 DC DC DC 11 11 11 N 1 4.98 0.50 119.90 124.88 A A A C2 N3 C4 DC DC DC 11 11 11 N 1 -5.60 0.50 117.40 111.80 A A A C4 C5 C6 DC DC DC 11 11 11 N 1 6.56 0.50 121.00 127.56 A A A C5 C6 N1 DC DC DC 11 11 11 N 1 6.81 0.70 118.00 124.81 A A A N3 C4 N4 DC DC DC 11 11 11 N 1 -7.56 0.70 120.20 112.64 A A A C5 C4 N4 DC DC DC 11 11 11 N 1 8.15 1.20 119.70 127.85 A A A C3' O3' P DC DC DG 11 11 12 Y 1 -12.08 1.90 104.00 91.92 A A A O3' P O5' DC DG DG 11 12 12 Y 1 -2.48 0.40 104.50 102.02 A A A O4' C4' C3' DG DG DG 12 12 12 N 1 2.34 0.30 108.30 110.64 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 -4.52 0.60 125.10 120.58 A A A C6 N1 C2 DG DG DG 12 12 12 N 1 4.52 0.50 111.90 116.42 A A A C2 N3 C4 DG DG DG 12 12 12 N 1 -7.93 0.50 128.60 120.67 A A A N3 C4 C5 DG DG DG 12 12 12 N 1 4.32 0.50 111.50 115.82 A A A C5 C6 N1 DG DG DG 12 12 12 N 1 -2.72 0.40 110.80 108.08 A A A C4 C5 N7 DG DG DG 12 12 12 N 1 3.39 0.50 113.10 116.49 A A A N7 C8 N9 DG DG DG 12 12 12 N 1 -4.63 0.40 106.40 101.77 A A A C8 N9 C4 DG DG DG 12 12 12 N 1 2.57 0.40 105.40 107.97 A A A N9 C4 C5 DG DG DG 12 12 12 N 1 5.36 0.60 126.00 131.36 A A A N3 C4 N9 DG DG DG 12 12 12 N 1 -6.61 0.60 119.90 113.29 A A A N1 C6 O6 DG DG DG 12 12 12 N 1 10.20 1.30 126.50 136.70 A A A C4 N9 C1' DG DG DG 12 12 12 N 1 -10.88 0.70 108.00 97.12 A A A O4' C1' N1 DC DC DC 13 13 13 N 1 -3.44 0.50 117.40 113.96 A A A C4 C5 C6 DC DC DC 13 13 13 N 1 -6.23 0.80 105.90 99.67 A A A O4' C1' C2' DG DG DG 14 14 14 N 1 -7.49 0.80 109.40 101.91 B B B O5' C5' C4' DC DC DC 1 1 1 N 1 -7.88 1.00 110.10 102.22 B B B C1' O4' C4' DC DC DC 1 1 1 N 1 -6.10 0.80 105.90 99.80 B B B O4' C1' C2' DC DC DC 1 1 1 N 1 11.07 0.30 108.30 119.37 B B B O4' C1' N1 DC DC DC 1 1 1 N 1 -2.63 0.40 120.30 117.67 B B B C6 N1 C2 DC DC DC 1 1 1 N 1 4.83 0.70 120.20 125.03 B B B C5 C4 N4 DC DC DC 1 1 1 N 1 10.04 1.20 119.70 129.74 B B B C3' O3' P DC DC DG 1 1 2 Y 1 6.94 1.10 109.80 116.74 B B B C5' C4' O4' DG DG DG 2 2 2 N 1 -5.50 0.70 108.00 102.50 B B B O4' C1' N9 DG DG DG 2 2 2 N 1 9.99 1.20 110.70 120.69 B B B O5' P OP2 DC DC DC 3 3 3 N 1 3.22 0.50 106.80 110.02 B B B O4' C1' C2' DC DC DC 3 3 3 N 1 -4.27 0.70 120.20 115.93 B B B C5 C4 N4 DC DC DC 3 3 3 N 1 -6.28 1.00 110.10 103.82 B B B C1' O4' C4' DG DG DG 4 4 4 N 1 -4.81 0.80 102.40 97.59 B B B C3' C2' C1' DG DG DG 4 4 4 N 1 14.08 0.30 108.30 122.38 B B B O4' C1' N9 DG DG DG 4 4 4 N 1 4.19 0.30 108.30 112.49 B B B O4' C1' N9 DG DG DG 5 5 5 N 1 4.40 0.70 110.30 114.70 B B B C1' O4' C4' DG DG DG 6 6 6 N 1 9.77 1.20 102.50 112.27 B B B C3' C2' C1' DG DG DG 6 6 6 N 1 -5.30 0.80 105.90 100.60 B B B O4' C1' C2' DG DG DG 6 6 6 N 1 5.82 0.30 108.30 114.12 B B B O4' C1' N9 DG DG DG 6 6 6 N 1 -4.55 0.60 125.10 120.55 B B B C6 N1 C2 DG DG DG 6 6 6 N 1 3.22 0.50 111.90 115.12 B B B C2 N3 C4 DG DG DG 6 6 6 N 1 3.35 0.50 111.50 114.85 B B B C5 C6 N1 DG DG DG 6 6 6 N 1 3.27 0.50 113.10 116.37 B B B N7 C8 N9 DG DG DG 6 6 6 N 1 -4.47 0.40 106.40 101.93 B B B C8 N9 C4 DG DG DG 6 6 6 N 1 3.47 0.40 105.40 108.87 B B B N9 C4 C5 DG DG DG 6 6 6 N 1 -5.38 0.70 119.90 114.52 B B B N3 C2 N2 DG DG DG 6 6 6 N 1 -3.86 0.60 119.90 116.04 B B B N1 C6 O6 DG DG DG 6 6 6 N 1 10.80 1.20 119.70 130.50 B B B C3' O3' P DG DG DT 6 6 7 Y 1 -3.00 0.40 104.50 101.50 B B B O4' C4' C3' DT DT DT 7 7 7 N 1 -9.40 0.80 102.40 93.00 B B B C3' C2' C1' DT DT DT 7 7 7 N 1 -6.00 0.80 105.90 99.90 B B B O4' C1' C2' DT DT DT 7 7 7 N 1 -3.07 0.50 121.30 118.23 B B B C6 N1 C2 DT DT DT 7 7 7 N 1 4.16 0.60 123.70 127.86 B B B C5 C6 N1 DT DT DT 7 7 7 N 1 5.00 0.80 123.10 128.10 B B B N1 C2 O2 DT DT DT 7 7 7 N 1 -3.72 0.60 122.30 118.58 B B B N3 C2 O2 DT DT DT 7 7 7 N 1 4.03 0.60 119.90 123.93 B B B N3 C4 O4 DT DT DT 7 7 7 N 1 15.18 1.50 120.40 135.58 B B B C6 N1 C1' DT DT DT 7 7 7 N 1 -12.09 1.60 118.20 106.11 B B B C2 N1 C1' DT DT DT 7 7 7 N 1 -11.01 1.60 120.90 109.89 B B B P O5' C5' DA DA DA 8 8 8 N 1 3.42 0.50 110.60 114.02 B B B C2 N3 C4 DA DA DA 8 8 8 N 1 -11.72 1.80 114.10 102.38 B B B C5' C4' C3' DC DC DC 9 9 9 N 1 -6.61 0.80 105.90 99.29 B B B O4' C1' C2' DC DC DC 9 9 9 N 1 8.06 0.30 108.30 116.36 B B B O4' C1' N1 DC DC DC 9 9 9 N 1 -3.14 0.40 120.30 117.16 B B B C6 N1 C2 DC DC DC 9 9 9 N 1 3.74 0.50 121.00 124.74 B B B C5 C6 N1 DC DC DC 9 9 9 N 1 5.75 0.70 118.00 123.75 B B B N3 C4 N4 DC DC DC 9 9 9 N 1 -5.65 0.70 120.20 114.55 B B B C5 C4 N4 DC DC DC 9 9 9 N 1 -7.48 1.20 119.70 112.22 B B B C3' O3' P DC DC DC 10 10 11 Y 1 6.64 1.10 110.50 117.14 B B B O3' P OP1 DC DC DC 10 11 11 Y 1 8.15 1.20 119.70 127.85 B B B C3' O3' P DC DC DG 11 11 12 Y 1 -2.41 0.40 104.50 102.09 B B B O4' C4' C3' DG DG DG 12 12 12 N 1 8.50 1.20 115.70 124.20 B B B C5' C4' C3' DG DG DG 12 12 12 N 1 2.08 0.30 108.30 110.38 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 9.09 0.30 108.30 117.39 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 -2.69 0.40 120.30 117.61 B B B C6 N1 C2 DC DC DC 13 13 13 N 1 8.18 1.20 119.70 127.88 B B B C3' O3' P DC DC DG 13 13 14 Y 1 3.05 0.30 108.30 111.35 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 A A C5' C4' DC DC 1 1 0.054 0.007 1.512 1.566 N 1 A A O3' C3' DC DC 1 1 0.146 0.013 1.435 1.581 N 1 A A C5' C4' DG DG 2 2 0.055 0.007 1.512 1.567 N 1 A A C5' C4' DG DG 6 6 0.047 0.007 1.512 1.559 N 1 A A N3 C4 DG DG 6 6 0.042 0.007 1.350 1.392 N 1 A A N9 C4 DG DG 6 6 0.059 0.008 1.375 1.434 N 1 A A N9 C4 DA DA 8 8 0.041 0.006 1.374 1.415 N 1 A A N1 C6 DC DC 11 11 0.039 0.006 1.367 1.406 N 1 A A N3 C4 DC DC 11 11 0.045 0.007 1.335 1.380 N 1 A A N9 C4 DG DG 12 12 0.070 0.008 1.375 1.445 N 1 B B C5' C4' DC DC 3 3 0.053 0.007 1.512 1.565 N 1 B B C5' C4' DG DG 5 5 0.051 0.007 1.512 1.563 N 1 B B O3' C3' DG DG 6 6 0.082 0.013 1.435 1.517 N 1 B B C1' N1 DC DC 13 13 0.078 0.013 1.488 1.566 N 43.531 18.22 0.00 0.00 18.22 0.00 -36.44 0.902 0.866 0.27440 0.24580 0.24734 2.60 19.96 126 2168 2042 5.8 97.18 14.130 0.297 RANDOM 1 Isotropic THROUGHOUT MOLECULAR REPLACEMENT 0.244 0.085 0.80 0.80 1.40 A-DNA fiber Model MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.60 19.96 46 614 0 568 0 0.023 0.021 636 3.975 3.000 978 0.152 0.200 110 0.010 0.020 294 0.394 0.443 2.669 3 141 20 94.74 57.76 2.60 20.0 3QK4 2256 2171 1.0 1.0 0.0770 0.0714 1 4.50 3.67 96.20 0.4184 2.60 2.69 1.2 0.3936 1 3.71 95.4 data collection MAR345dtb phasing AMoRE refinement REFMAC 5.5.0109 data reduction AUTOMAR Crystal structure of d(CGCGGGTACCCGCG)2 as A-DNA duplex 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 14 B N1 DG 14 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 14 B O6 DG 14 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 14 B N2 DG 14 1_555 hydrog DG-DC PAIR A DG 2 A N1 DG 2 1_555 B DC 13 B O2 DC 13 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 12 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 12 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 12 B N2 DG 12 1_555 hydrog DG-DC PAIR A DG 4 A N1 DG 4 1_555 B DC 11 B N3 DC 11 1_555 hydrog DG-DG MISPAIR A DG 4 A N1 DG 4 1_555 B DG 12 B O6 DG 12 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 10 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 10 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 10 B N4 DC 10 1_555 hydrog DG-DC PAIR A DG 6 A O6 DG 6 1_555 B DC 9 B N4 DC 9 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 8 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 8 B N6 DA 8 1_555 hydrog WATSON-CRICK A DA 8 A N1 DA 8 1_555 B DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 8 A N6 DA 8 1_555 B DT 7 B O4 DT 7 1_555 hydrog DC-DG PAIR A DC 9 A N4 DC 9 1_555 B DG 6 B O6 DG 6 1_555 hydrog DC-DG PAIR A DC 10 A N4 DC 10 1_555 B DG 5 B O6 DG 5 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 3 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 3 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 3 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 13 A N3 DC 13 1_555 B DG 2 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 13 A N4 DC 13 1_555 B DG 2 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 13 A O2 DC 13 1_555 B DG 2 B N2 DG 2 1_555 hydrog DG-DC PAIR A DG 14 A N2 DG 14 1_555 B DC 1 B O2 DC 1 1_555 hydrog DT-DA PAIR B DT 7 B N3 DT 7 1_555 B DA 8 B N7 DA 8 1_555 DNA A-DNA duplex, DNA 3QK4 PDB 1 3QK4 1 14 3QK4 1 14 3QK4 A 1 1 14 1 14 3QK4 1 14 3QK4 B 1 1 14 78 P 43