0.004456 0.002573 0.000000 0.000000 0.005146 0.000000 0.000000 0.000000 0.013275 0.00000 0.00000 0.00000 Prongay, A.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.00 90.00 120.00 224.392 224.392 75.331 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C36 H63 N5 O7 S 709.980 (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide Narlaprevir, bound form non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N S N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 R C N 86 N C N 87 N O N 88 N C N 89 N S N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 S C N 176 N C N 177 N C N 178 N C N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N C N 261 N O N 262 N N N 263 N C N 264 N C N 265 N C N 266 N C N 267 N C N 268 N C N 269 N C N 270 N S N 271 N O N 272 N O N 273 N C N 274 N C N 275 N C N 276 N C N 277 N N N 278 S C N 279 N C N 280 N C N 281 N C N 282 N C N 283 N C N 284 N O N 285 N N N 286 N C N 287 S C N 288 R C N 289 S C N 290 N C N 291 N C N 292 N C N 293 N C N 294 N O N 295 N N N 296 S C N 297 N C N 298 N C N 299 N C N 300 N C N 301 N O N 302 R C N 303 N O N 304 N N N 305 N C N 306 N C N 307 N C N 308 N C N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N N N 396 S C N 397 N C N 398 N O N 399 N C N 400 N C N 401 N C N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 N C N 417 N O N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 R C N 431 N O N 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C Y 448 N C Y 449 N C Y 450 N C Y 451 N N Y 452 N C Y 453 N C Y 454 N C Y 455 N C Y 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 N C Y 475 N C Y 476 N C Y 477 N C Y 478 N C Y 479 N C Y 480 N C N 481 N O N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N N N 495 S C N 496 N C N 497 N O N 498 N C N 499 N C N 500 N C N 501 N O N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing Y 372 N doub Y 373 N sing Y 374 N sing N 375 N sing Y 376 N doub N 377 N sing Y 378 N doub N 379 N sing Y 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing Y 441 N doub Y 442 N sing Y 443 N sing N 444 N sing Y 445 N doub Y 446 N sing Y 447 N sing N 448 N sing Y 449 N sing Y 450 N doub N 451 N sing Y 452 N doub N 453 N sing Y 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N doub N 465 N sing N 466 N sing N 467 N sing N 468 N sing Y 469 N doub Y 470 N sing Y 471 N sing N 472 N sing Y 473 N doub N 474 N sing Y 475 N doub N 476 N sing Y 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N doub N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing To be Published 0353 Candidate selection and preclinical evaluation culminating in the discovery of Narlaprevir (SCH 900518): A potent, selective and orally efficacious second generation HCV NS3 serine protease inhibitor 10.2210/pdb3lon/pdb pdb_00003lon 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2005-04-15 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 21233.225 Genome polyprotein UNP residues 1027 to 1207 2 man polymer 2394.039 KK-NS4a(21-39)-KK C32S 2 syn polymer 65.409 ZINC ION 2 syn non-polymer 709.980 (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide 1 syn non-polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 18.015 water 222 nat water no no MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH AVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH AVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH A,C polypeptide(L) no no KKGSVVIVGRIVLSGKPAIIPKK KKGSVVIVGRIVLSGKPAIIPKK B,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n H77 Strain of Genotype 1A sample NS3 31646 Hepatitis C virus subtype 1a 562 Escherichia coli BL21(DE3) pET3a 1 3.86 68.15 VAPOR DIFFUSION, HANGING DROP 5.6 Crystallization was performed by the vapor diffusion method using hanging drops (4 L protein solution mixed with 4 L (0.75 - 1.00) M NaCl - 0.1 M MES - 0.1 M Na/K PO4, pH 5.6 - 6.2) suspended over 1 mL reservoir solutions of (1.25 - 1.50) M NaCl - 0.1 M MES - 0.1 M Na/K PO4 - 5 mM -mercaptoethanol, pH 5.6-6.2. The trays were set at 4C for 5-7 days to control nucleation, followed by incubation for 3 weeks at 12C to maximize crystal growth., VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp pdbx_struct_conn_angle struct_conn struct_conn_type struct_ref_seq_dif struct_site database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Database references Derived calculations Structure summary Database references Data collection Refinement description 1 0 2011-01-19 1 1 2011-07-13 1 2 2021-04-14 1 3 2021-10-13 1 4 2024-04-03 _chem_comp.pdbx_synonyms _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn_type.id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2010-02-04 REL REL ZN ZINC ION NNA (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide BME BETA-MERCAPTOETHANOL HOH water PEPTIDES WERE SYNTHESIZED USING FMOC SOLID-PHASE CHEMISTRY ON AN ABI 431 SYNTHESIZER (FOSTER CITY,CA). PRELOADED 2-CHLOROTRITYL CHLORIDE RESIN OR WANG RESIN USED FOR THE SOLID PHASE ASSEMBLY OF NS4A ACTIVATOR PEPTIDE. THE SEQUENCE OF THE PEPTIDE WAS LYS-LYS-GLY-SER-VAL-VAL-ILE-VAL-GLY-ARG-ILE-VAL-LEU-SER-GLY-LYS-PRO-ALA-ILE-VAL-PRO-LYS-LYS-OH. TRIFUNCTIONAL RESIDUE SIDECHAIN PROTECTING GROUPS INCLUDED TERT-BUTYL FOR SER, TERT-BUTOXYCARBONYL FOR LYS, AND 2,2,4,6,7--5-SULFONYL FOR ARG. CLEAVAGE AND SIDECHAIN DEPROTECTION WAS ACCOMPLISHED USING 92.5% TRIFLUOROACETIC ACID, WITH 2.5% EACH OF WATER, ETHANEDITHIOL AND TRIISOPROPYLSILANE FOR 2 HOURS. THE PEPTIDE WAS PURIFIED BY REVERSED PHASE HPLC. THE PEPTIDE MOLECULAR WEIGHT WAS CONFIRMED BY ELECTROSPRAY IONIZATION MASS SPECTROMETRY. sample 2O8M PDB experimental model ZN 901 3 ZN ZN 901 A NNA 999 4 NNA NNA 999 A BME 998 5 BME BME 998 A ZN 902 3 ZN ZN 902 C HOH 2 6 HOH HOH 190 A HOH 191 6 HOH HOH 191 A HOH 192 6 HOH HOH 192 A HOH 193 6 HOH HOH 193 A HOH 3 6 HOH HOH 194 A HOH 195 6 HOH HOH 195 A HOH 196 6 HOH HOH 196 A HOH 6 6 HOH HOH 197 A HOH 198 6 HOH HOH 198 A HOH 199 6 HOH HOH 199 A HOH 200 6 HOH HOH 200 A HOH 7 6 HOH HOH 201 A HOH 202 6 HOH HOH 202 A HOH 203 6 HOH HOH 203 A HOH 8 6 HOH HOH 204 A HOH 205 6 HOH HOH 205 A HOH 206 6 HOH HOH 206 A HOH 9 6 HOH HOH 207 A HOH 208 6 HOH HOH 208 A HOH 10 6 HOH HOH 209 A HOH 210 6 HOH HOH 210 A HOH 211 6 HOH HOH 211 A HOH 212 6 HOH HOH 212 A HOH 14 6 HOH HOH 213 A HOH 16 6 HOH HOH 214 A HOH 17 6 HOH HOH 215 A HOH 216 6 HOH HOH 216 A HOH 18 6 HOH HOH 217 A HOH 218 6 HOH HOH 218 A HOH 219 6 HOH HOH 219 A HOH 220 6 HOH HOH 220 A HOH 221 6 HOH HOH 221 A HOH 222 6 HOH HOH 222 A HOH 19 6 HOH HOH 223 A HOH 23 6 HOH HOH 224 A HOH 26 6 HOH HOH 225 A HOH 27 6 HOH HOH 226 A HOH 32 6 HOH HOH 227 A HOH 35 6 HOH HOH 228 A HOH 36 6 HOH HOH 229 A HOH 41 6 HOH HOH 230 A HOH 42 6 HOH HOH 231 A HOH 43 6 HOH HOH 232 A HOH 46 6 HOH HOH 233 A HOH 48 6 HOH HOH 234 A HOH 50 6 HOH HOH 235 A HOH 51 6 HOH HOH 236 A HOH 52 6 HOH HOH 237 A HOH 53 6 HOH HOH 238 A HOH 55 6 HOH HOH 239 A HOH 57 6 HOH HOH 240 A HOH 58 6 HOH HOH 241 A HOH 60 6 HOH HOH 242 A HOH 63 6 HOH HOH 243 A HOH 65 6 HOH HOH 244 A HOH 66 6 HOH HOH 245 A HOH 69 6 HOH HOH 246 A HOH 70 6 HOH HOH 247 A HOH 72 6 HOH HOH 248 A HOH 74 6 HOH HOH 249 A HOH 75 6 HOH HOH 250 A HOH 76 6 HOH HOH 251 A HOH 77 6 HOH HOH 252 A HOH 80 6 HOH HOH 253 A HOH 83 6 HOH HOH 254 A HOH 85 6 HOH HOH 255 A HOH 86 6 HOH HOH 256 A HOH 87 6 HOH HOH 257 A HOH 88 6 HOH HOH 258 A HOH 92 6 HOH HOH 259 A HOH 93 6 HOH HOH 260 A HOH 95 6 HOH HOH 261 A HOH 97 6 HOH HOH 262 A HOH 99 6 HOH HOH 263 A HOH 100 6 HOH HOH 264 A HOH 101 6 HOH HOH 265 A HOH 103 6 HOH HOH 266 A HOH 105 6 HOH HOH 267 A HOH 106 6 HOH HOH 268 A HOH 107 6 HOH HOH 269 A HOH 108 6 HOH HOH 270 A HOH 111 6 HOH HOH 271 A HOH 112 6 HOH HOH 272 A HOH 113 6 HOH HOH 273 A HOH 114 6 HOH HOH 274 A HOH 116 6 HOH HOH 275 A HOH 118 6 HOH HOH 276 A HOH 119 6 HOH HOH 277 A HOH 123 6 HOH HOH 278 A HOH 125 6 HOH HOH 279 A HOH 126 6 HOH HOH 280 A HOH 128 6 HOH HOH 281 A HOH 129 6 HOH HOH 282 A HOH 130 6 HOH HOH 283 A HOH 131 6 HOH HOH 284 A HOH 134 6 HOH HOH 285 A HOH 135 6 HOH HOH 286 A HOH 136 6 HOH HOH 287 A HOH 137 6 HOH HOH 288 A HOH 138 6 HOH HOH 289 A HOH 140 6 HOH HOH 290 A HOH 146 6 HOH HOH 291 A HOH 148 6 HOH HOH 292 A HOH 149 6 HOH HOH 293 A HOH 152 6 HOH HOH 294 A HOH 155 6 HOH HOH 295 A HOH 156 6 HOH HOH 296 A HOH 157 6 HOH HOH 297 A HOH 160 6 HOH HOH 298 A HOH 164 6 HOH HOH 299 A HOH 165 6 HOH HOH 300 A HOH 166 6 HOH HOH 301 A HOH 167 6 HOH HOH 302 A HOH 171 6 HOH HOH 303 A HOH 173 6 HOH HOH 304 A HOH 174 6 HOH HOH 305 A HOH 175 6 HOH HOH 306 A HOH 177 6 HOH HOH 307 A HOH 178 6 HOH HOH 308 A HOH 179 6 HOH HOH 309 A HOH 181 6 HOH HOH 310 A HOH 186 6 HOH HOH 311 A HOH 188 6 HOH HOH 312 A HOH 189 6 HOH HOH 313 A HOH 13 6 HOH HOH 13 B HOH 24 6 HOH HOH 42 B HOH 25 6 HOH HOH 43 B HOH 68 6 HOH HOH 68 B HOH 98 6 HOH HOH 98 B HOH 124 6 HOH HOH 124 B HOH 159 6 HOH HOH 159 B HOH 190 6 HOH HOH 190 B HOH 204 6 HOH HOH 204 B HOH 1 6 HOH HOH 190 C HOH 4 6 HOH HOH 191 C HOH 5 6 HOH HOH 192 C HOH 11 6 HOH HOH 193 C HOH 194 6 HOH HOH 194 C HOH 15 6 HOH HOH 195 C HOH 22 6 HOH HOH 196 C HOH 197 6 HOH HOH 197 C HOH 29 6 HOH HOH 198 C HOH 30 6 HOH HOH 199 C HOH 31 6 HOH HOH 200 C HOH 201 6 HOH HOH 201 C HOH 33 6 HOH HOH 202 C HOH 34 6 HOH HOH 203 C HOH 37 6 HOH HOH 204 C HOH 38 6 HOH HOH 205 C HOH 39 6 HOH HOH 206 C HOH 207 6 HOH HOH 207 C HOH 40 6 HOH HOH 208 C HOH 209 6 HOH HOH 209 C HOH 44 6 HOH HOH 210 C HOH 45 6 HOH HOH 211 C HOH 47 6 HOH HOH 212 C HOH 213 6 HOH HOH 213 C HOH 214 6 HOH HOH 214 C HOH 215 6 HOH HOH 215 C HOH 49 6 HOH HOH 216 C HOH 217 6 HOH HOH 217 C HOH 54 6 HOH HOH 218 C HOH 56 6 HOH HOH 219 C HOH 59 6 HOH HOH 220 C HOH 61 6 HOH HOH 221 C HOH 62 6 HOH HOH 222 C HOH 64 6 HOH HOH 223 C HOH 67 6 HOH HOH 224 C HOH 71 6 HOH HOH 225 C HOH 73 6 HOH HOH 226 C HOH 79 6 HOH HOH 227 C HOH 81 6 HOH HOH 228 C HOH 28 6 HOH HOH 229 C HOH 84 6 HOH HOH 230 C HOH 89 6 HOH HOH 231 C HOH 91 6 HOH HOH 232 C HOH 94 6 HOH HOH 233 C HOH 96 6 HOH HOH 234 C HOH 102 6 HOH HOH 235 C HOH 104 6 HOH HOH 236 C HOH 109 6 HOH HOH 237 C HOH 110 6 HOH HOH 238 C HOH 115 6 HOH HOH 239 C HOH 117 6 HOH HOH 240 C HOH 120 6 HOH HOH 241 C HOH 121 6 HOH HOH 242 C HOH 122 6 HOH HOH 243 C HOH 127 6 HOH HOH 244 C HOH 132 6 HOH HOH 245 C HOH 133 6 HOH HOH 246 C HOH 139 6 HOH HOH 247 C HOH 141 6 HOH HOH 248 C HOH 142 6 HOH HOH 249 C HOH 143 6 HOH HOH 250 C HOH 144 6 HOH HOH 251 C HOH 145 6 HOH HOH 252 C HOH 147 6 HOH HOH 253 C HOH 150 6 HOH HOH 254 C HOH 151 6 HOH HOH 255 C HOH 153 6 HOH HOH 256 C HOH 154 6 HOH HOH 257 C HOH 158 6 HOH HOH 258 C HOH 162 6 HOH HOH 259 C HOH 163 6 HOH HOH 260 C HOH 168 6 HOH HOH 261 C HOH 169 6 HOH HOH 262 C HOH 170 6 HOH HOH 263 C HOH 172 6 HOH HOH 264 C HOH 176 6 HOH HOH 265 C HOH 180 6 HOH HOH 266 C HOH 183 6 HOH HOH 267 C HOH 184 6 HOH HOH 268 C HOH 185 6 HOH HOH 269 C HOH 187 6 HOH HOH 270 C HOH 12 6 HOH HOH 12 D HOH 20 6 HOH HOH 42 D HOH 21 6 HOH HOH 43 D HOH 78 6 HOH HOH 78 D HOH 90 6 HOH HOH 90 D HOH 161 6 HOH HOH 161 D HOH 182 6 HOH HOH 182 D HOH 82 6 HOH HOH 229 D n 1 -10 A n 2 -9 A n 3 -8 A n 4 -7 A n 5 -6 A n 6 -5 A n 7 -4 A n 8 -3 A n 9 -2 A n 10 -1 A n 11 0 A ALA 1 n 12 ALA 1 A PRO 2 n 13 PRO 2 A ILE 3 n 14 ILE 3 A THR 4 n 15 THR 4 A ALA 5 n 16 ALA 5 A TYR 6 n 17 TYR 6 A ALA 7 n 18 ALA 7 A GLN 8 n 19 GLN 8 A GLN 9 n 20 GLN 9 A THR 10 n 21 THR 10 A ARG 11 n 22 ARG 11 A GLY 12 n 23 GLY 12 A LEU 13 n 24 LEU 13 A LEU 14 n 25 LEU 14 A GLY 15 n 26 GLY 15 A CYS 16 n 27 CYS 16 A ILE 17 n 28 ILE 17 A ILE 18 n 29 ILE 18 A THR 19 n 30 THR 19 A SER 20 n 31 SER 20 A LEU 21 n 32 LEU 21 A THR 22 n 33 THR 22 A GLY 23 n 34 GLY 23 A ARG 24 n 35 ARG 24 A ASP 25 n 36 ASP 25 A LYS 26 n 37 LYS 26 A ASN 27 n 38 ASN 27 A GLN 28 n 39 GLN 28 A VAL 29 n 40 VAL 29 A GLU 30 n 41 GLU 30 A GLY 31 n 42 GLY 31 A GLU 32 n 43 GLU 32 A VAL 33 n 44 VAL 33 A GLN 34 n 45 GLN 34 A ILE 35 n 46 ILE 35 A VAL 36 n 47 VAL 36 A SER 37 n 48 SER 37 A THR 38 n 49 THR 38 A ALA 39 n 50 ALA 39 A THR 40 n 51 THR 40 A GLN 41 n 52 GLN 41 A THR 42 n 53 THR 42 A PHE 43 n 54 PHE 43 A LEU 44 n 55 LEU 44 A ALA 45 n 56 ALA 45 A THR 46 n 57 THR 46 A CYS 47 n 58 CYS 47 A ILE 48 n 59 ILE 48 A ASN 49 n 60 ASN 49 A GLY 50 n 61 GLY 50 A VAL 51 n 62 VAL 51 A CYS 52 n 63 CYS 52 A TRP 53 n 64 TRP 53 A THR 54 n 65 THR 54 A VAL 55 n 66 VAL 55 A TYR 56 n 67 TYR 56 A HIS 57 n 68 HIS 57 A GLY 58 n 69 GLY 58 A ALA 59 n 70 ALA 59 A GLY 60 n 71 GLY 60 A THR 61 n 72 THR 61 A ARG 62 n 73 ARG 62 A THR 63 n 74 THR 63 A ILE 64 n 75 ILE 64 A ALA 65 n 76 ALA 65 A SER 66 n 77 SER 66 A PRO 67 n 78 PRO 67 A LYS 68 n 79 LYS 68 A GLY 69 n 80 GLY 69 A PRO 70 n 81 PRO 70 A VAL 71 n 82 VAL 71 A ILE 72 n 83 ILE 72 A GLN 73 n 84 GLN 73 A MET 74 n 85 MET 74 A TYR 75 n 86 TYR 75 A THR 76 n 87 THR 76 A ASN 77 n 88 ASN 77 A VAL 78 n 89 VAL 78 A ASP 79 n 90 ASP 79 A GLN 80 n 91 GLN 80 A ASP 81 n 92 ASP 81 A LEU 82 n 93 LEU 82 A VAL 83 n 94 VAL 83 A GLY 84 n 95 GLY 84 A TRP 85 n 96 TRP 85 A PRO 86 n 97 PRO 86 A ALA 87 n 98 ALA 87 A PRO 88 n 99 PRO 88 A GLN 89 n 100 GLN 89 A GLY 90 n 101 GLY 90 A SER 91 n 102 SER 91 A ARG 92 n 103 ARG 92 A SER 93 n 104 SER 93 A LEU 94 n 105 LEU 94 A THR 95 n 106 THR 95 A PRO 96 n 107 PRO 96 A CYS 97 n 108 CYS 97 A THR 98 n 109 THR 98 A CYS 99 n 110 CYS 99 A GLY 100 n 111 GLY 100 A SER 101 n 112 SER 101 A SER 102 n 113 SER 102 A ASP 103 n 114 ASP 103 A LEU 104 n 115 LEU 104 A TYR 105 n 116 TYR 105 A LEU 106 n 117 LEU 106 A VAL 107 n 118 VAL 107 A THR 108 n 119 THR 108 A ARG 109 n 120 ARG 109 A HIS 110 n 121 HIS 110 A ALA 111 n 122 ALA 111 A ASP 112 n 123 ASP 112 A VAL 113 n 124 VAL 113 A ILE 114 n 125 ILE 114 A PRO 115 n 126 PRO 115 A VAL 116 n 127 VAL 116 A ARG 117 n 128 ARG 117 A ARG 118 n 129 ARG 118 A ARG 119 n 130 ARG 119 A GLY 120 n 131 GLY 120 A ASP 121 n 132 ASP 121 A SER 122 n 133 SER 122 A ARG 123 n 134 ARG 123 A GLY 124 n 135 GLY 124 A SER 125 n 136 SER 125 A LEU 126 n 137 LEU 126 A LEU 127 n 138 LEU 127 A SER 128 n 139 SER 128 A PRO 129 n 140 PRO 129 A ARG 130 n 141 ARG 130 A PRO 131 n 142 PRO 131 A ILE 132 n 143 ILE 132 A SER 133 n 144 SER 133 A TYR 134 n 145 TYR 134 A LEU 135 n 146 LEU 135 A LYS 136 n 147 LYS 136 A GLY 137 n 148 GLY 137 A SER 138 n 149 SER 138 A SER 139 n 150 SER 139 A GLY 140 n 151 GLY 140 A GLY 141 n 152 GLY 141 A PRO 142 n 153 PRO 142 A LEU 143 n 154 LEU 143 A LEU 144 n 155 LEU 144 A CYS 145 n 156 CYS 145 A PRO 146 n 157 PRO 146 A ALA 147 n 158 ALA 147 A GLY 148 n 159 GLY 148 A HIS 149 n 160 HIS 149 A ALA 150 n 161 ALA 150 A VAL 151 n 162 VAL 151 A GLY 152 n 163 GLY 152 A LEU 153 n 164 LEU 153 A PHE 154 n 165 PHE 154 A ARG 155 n 166 ARG 155 A ALA 156 n 167 ALA 156 A ALA 157 n 168 ALA 157 A VAL 158 n 169 VAL 158 A CYS 159 n 170 CYS 159 A THR 160 n 171 THR 160 A ARG 161 n 172 ARG 161 A GLY 162 n 173 GLY 162 A VAL 163 n 174 VAL 163 A ALA 164 n 175 ALA 164 A LYS 165 n 176 LYS 165 A ALA 166 n 177 ALA 166 A VAL 167 n 178 VAL 167 A ASP 168 n 179 ASP 168 A PHE 169 n 180 PHE 169 A ILE 170 n 181 ILE 170 A PRO 171 n 182 PRO 171 A VAL 172 n 183 VAL 172 A GLU 173 n 184 GLU 173 A ASN 174 n 185 ASN 174 A LEU 175 n 186 LEU 175 A GLU 176 n 187 GLU 176 A THR 177 n 188 THR 177 A THR 178 n 189 THR 178 A MET 179 n 190 MET 179 A ARG 180 n 191 ARG 180 A SER 181 n 192 SER 181 A n 193 182 A n 194 183 A n 195 184 A n 196 185 A n 197 186 A n 198 187 A n 199 188 A n 200 189 A n 1 19 B LYS 20 n 2 LYS 20 B GLY 21 n 3 GLY 21 B SER 22 n 4 SER 22 B VAL 23 n 5 VAL 23 B VAL 24 n 6 VAL 24 B ILE 25 n 7 ILE 25 B VAL 26 n 8 VAL 26 B GLY 27 n 9 GLY 27 B ARG 28 n 10 ARG 28 B ILE 29 n 11 ILE 29 B VAL 30 n 12 VAL 30 B LEU 31 n 13 LEU 31 B SER 32 n 14 SER 32 B GLY 33 n 15 GLY 33 B LYS 34 n 16 LYS 34 B PRO 35 n 17 PRO 35 B ALA 36 n 18 ALA 36 B ILE 37 n 19 ILE 37 B ILE 38 n 20 ILE 38 B PRO 39 n 21 PRO 39 B LYS 40 n 22 LYS 40 B LYS 41 n 23 LYS 41 B n 1 -10 C n 2 -9 C n 3 -8 C n 4 -7 C n 5 -6 C n 6 -5 C n 7 -4 C n 8 -3 C n 9 -2 C n 10 -1 C n 11 0 C n 12 1 C n 13 2 C n 14 3 C n 15 4 C n 16 5 C n 17 6 C n 18 7 C n 19 8 C n 20 9 C n 21 10 C n 22 11 C n 23 12 C n 24 13 C n 25 14 C n 26 15 C n 27 16 C n 28 17 C n 29 18 C n 30 19 C n 31 20 C n 32 21 C n 33 22 C n 34 23 C n 35 24 C n 36 25 C n 37 26 C n 38 27 C n 39 28 C VAL 29 n 40 VAL 29 C GLU 30 n 41 GLU 30 C GLY 31 n 42 GLY 31 C GLU 32 n 43 GLU 32 C VAL 33 n 44 VAL 33 C GLN 34 n 45 GLN 34 C ILE 35 n 46 ILE 35 C VAL 36 n 47 VAL 36 C SER 37 n 48 SER 37 C THR 38 n 49 THR 38 C ALA 39 n 50 ALA 39 C THR 40 n 51 THR 40 C GLN 41 n 52 GLN 41 C THR 42 n 53 THR 42 C PHE 43 n 54 PHE 43 C LEU 44 n 55 LEU 44 C ALA 45 n 56 ALA 45 C THR 46 n 57 THR 46 C CYS 47 n 58 CYS 47 C ILE 48 n 59 ILE 48 C ASN 49 n 60 ASN 49 C GLY 50 n 61 GLY 50 C VAL 51 n 62 VAL 51 C CYS 52 n 63 CYS 52 C TRP 53 n 64 TRP 53 C THR 54 n 65 THR 54 C VAL 55 n 66 VAL 55 C TYR 56 n 67 TYR 56 C HIS 57 n 68 HIS 57 C GLY 58 n 69 GLY 58 C ALA 59 n 70 ALA 59 C GLY 60 n 71 GLY 60 C THR 61 n 72 THR 61 C ARG 62 n 73 ARG 62 C THR 63 n 74 THR 63 C ILE 64 n 75 ILE 64 C ALA 65 n 76 ALA 65 C SER 66 n 77 SER 66 C PRO 67 n 78 PRO 67 C LYS 68 n 79 LYS 68 C GLY 69 n 80 GLY 69 C PRO 70 n 81 PRO 70 C VAL 71 n 82 VAL 71 C ILE 72 n 83 ILE 72 C GLN 73 n 84 GLN 73 C MET 74 n 85 MET 74 C TYR 75 n 86 TYR 75 C THR 76 n 87 THR 76 C ASN 77 n 88 ASN 77 C VAL 78 n 89 VAL 78 C ASP 79 n 90 ASP 79 C GLN 80 n 91 GLN 80 C ASP 81 n 92 ASP 81 C LEU 82 n 93 LEU 82 C VAL 83 n 94 VAL 83 C GLY 84 n 95 GLY 84 C TRP 85 n 96 TRP 85 C PRO 86 n 97 PRO 86 C ALA 87 n 98 ALA 87 C PRO 88 n 99 PRO 88 C GLN 89 n 100 GLN 89 C GLY 90 n 101 GLY 90 C SER 91 n 102 SER 91 C ARG 92 n 103 ARG 92 C SER 93 n 104 SER 93 C LEU 94 n 105 LEU 94 C THR 95 n 106 THR 95 C PRO 96 n 107 PRO 96 C CYS 97 n 108 CYS 97 C THR 98 n 109 THR 98 C CYS 99 n 110 CYS 99 C GLY 100 n 111 GLY 100 C SER 101 n 112 SER 101 C SER 102 n 113 SER 102 C ASP 103 n 114 ASP 103 C LEU 104 n 115 LEU 104 C TYR 105 n 116 TYR 105 C LEU 106 n 117 LEU 106 C VAL 107 n 118 VAL 107 C THR 108 n 119 THR 108 C ARG 109 n 120 ARG 109 C HIS 110 n 121 HIS 110 C ALA 111 n 122 ALA 111 C ASP 112 n 123 ASP 112 C VAL 113 n 124 VAL 113 C ILE 114 n 125 ILE 114 C PRO 115 n 126 PRO 115 C VAL 116 n 127 VAL 116 C ARG 117 n 128 ARG 117 C ARG 118 n 129 ARG 118 C ARG 119 n 130 ARG 119 C GLY 120 n 131 GLY 120 C ASP 121 n 132 ASP 121 C SER 122 n 133 SER 122 C ARG 123 n 134 ARG 123 C GLY 124 n 135 GLY 124 C SER 125 n 136 SER 125 C LEU 126 n 137 LEU 126 C LEU 127 n 138 LEU 127 C SER 128 n 139 SER 128 C PRO 129 n 140 PRO 129 C ARG 130 n 141 ARG 130 C PRO 131 n 142 PRO 131 C ILE 132 n 143 ILE 132 C SER 133 n 144 SER 133 C TYR 134 n 145 TYR 134 C LEU 135 n 146 LEU 135 C LYS 136 n 147 LYS 136 C GLY 137 n 148 GLY 137 C SER 138 n 149 SER 138 C SER 139 n 150 SER 139 C GLY 140 n 151 GLY 140 C GLY 141 n 152 GLY 141 C PRO 142 n 153 PRO 142 C LEU 143 n 154 LEU 143 C LEU 144 n 155 LEU 144 C CYS 145 n 156 CYS 145 C PRO 146 n 157 PRO 146 C ALA 147 n 158 ALA 147 C GLY 148 n 159 GLY 148 C HIS 149 n 160 HIS 149 C ALA 150 n 161 ALA 150 C VAL 151 n 162 VAL 151 C GLY 152 n 163 GLY 152 C LEU 153 n 164 LEU 153 C PHE 154 n 165 PHE 154 C ARG 155 n 166 ARG 155 C ALA 156 n 167 ALA 156 C ALA 157 n 168 ALA 157 C VAL 158 n 169 VAL 158 C CYS 159 n 170 CYS 159 C THR 160 n 171 THR 160 C ARG 161 n 172 ARG 161 C GLY 162 n 173 GLY 162 C VAL 163 n 174 VAL 163 C ALA 164 n 175 ALA 164 C LYS 165 n 176 LYS 165 C ALA 166 n 177 ALA 166 C VAL 167 n 178 VAL 167 C ASP 168 n 179 ASP 168 C PHE 169 n 180 PHE 169 C ILE 170 n 181 ILE 170 C PRO 171 n 182 PRO 171 C VAL 172 n 183 VAL 172 C GLU 173 n 184 GLU 173 C ASN 174 n 185 ASN 174 C LEU 175 n 186 LEU 175 C GLU 176 n 187 GLU 176 C THR 177 n 188 THR 177 C THR 178 n 189 THR 178 C MET 179 n 190 MET 179 C n 191 180 C n 192 181 C n 193 182 C n 194 183 C n 195 184 C n 196 185 C n 197 186 C n 198 187 C n 199 188 C n 200 189 C n 1 19 D n 2 20 D GLY 21 n 3 GLY 21 D SER 22 n 4 SER 22 D VAL 23 n 5 VAL 23 D VAL 24 n 6 VAL 24 D ILE 25 n 7 ILE 25 D VAL 26 n 8 VAL 26 D GLY 27 n 9 GLY 27 D ARG 28 n 10 ARG 28 D ILE 29 n 11 ILE 29 D VAL 30 n 12 VAL 30 D LEU 31 n 13 LEU 31 D SER 32 n 14 SER 32 D GLY 33 n 15 GLY 33 D LYS 34 n 16 LYS 34 D PRO 35 n 17 PRO 35 D ALA 36 n 18 ALA 36 D n 19 37 D n 20 38 D n 21 39 D n 22 40 D n 23 41 D software_defined_assembly PISA 4 tetrameric author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 6970 -123 15440 2990 -54 9900 1690 -46 7820 A CYS 97 A SG CYS 108 1_555 A ZN 901 E ZN ZN 1_555 A CYS 99 A SG CYS 110 1_555 101.1 A CYS 97 A SG CYS 108 1_555 A ZN 901 E ZN ZN 1_555 A CYS 145 A SG CYS 156 1_555 100.4 A CYS 99 A SG CYS 110 1_555 A ZN 901 E ZN ZN 1_555 A CYS 145 A SG CYS 156 1_555 112.7 A CYS 97 A SG CYS 108 1_555 A ZN 901 E ZN ZN 1_555 A HOH 190 I O HOH 1_555 117.5 A CYS 99 A SG CYS 110 1_555 A ZN 901 E ZN ZN 1_555 A HOH 190 I O HOH 1_555 111.3 A CYS 145 A SG CYS 156 1_555 A ZN 901 E ZN ZN 1_555 A HOH 190 I O HOH 1_555 112.9 C CYS 97 C SG CYS 108 1_555 C ZN 902 H ZN ZN 1_555 C CYS 99 C SG CYS 110 1_555 99.2 C CYS 97 C SG CYS 108 1_555 C ZN 902 H ZN ZN 1_555 C CYS 145 C SG CYS 156 1_555 97.3 C CYS 99 C SG CYS 110 1_555 C ZN 902 H ZN ZN 1_555 C CYS 145 C SG CYS 156 1_555 114.9 C CYS 97 C SG CYS 108 1_555 C ZN 902 H ZN ZN 1_555 C HOH 190 K O HOH 1_555 114.9 C CYS 99 C SG CYS 110 1_555 C ZN 902 H ZN ZN 1_555 C HOH 190 K O HOH 1_555 111.2 C CYS 145 C SG CYS 156 1_555 C ZN 902 H ZN ZN 1_555 C HOH 190 K O HOH 1_555 117.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 6 A N TYR 17 B O VAL 30 B O VAL 12 B O ILE 29 B O ILE 11 A N VAL 33 A N VAL 44 A N VAL 36 A N VAL 47 A O PHE 43 A O PHE 54 A N THR 46 A N THR 57 A O TRP 53 A O TRP 64 A N CYS 52 A N CYS 63 A O TRP 85 A O TRP 96 A O LEU 82 A O LEU 93 A N ASN 77 A N ASN 88 A N ILE 64 A N ILE 75 A O VAL 71 A O VAL 82 A N LEU 106 A N LEU 117 A O ILE 114 A O ILE 125 A N ARG 117 A N ARG 128 A O SER 125 A O SER 136 A N ARG 130 A N ARG 141 A O ALA 164 A O ALA 175 A O ASP 168 A O ASP 179 A N ALA 156 A N ALA 167 A O VAL 151 A O VAL 162 A N LEU 143 A N LEU 154 A O LEU 144 A O LEU 155 A N TYR 105 A N TYR 116 B N ALA 36 B N ALA 18 D O VAL 30 D O VAL 12 D O VAL 23 D O VAL 5 C N THR 63 C N THR 74 B N ALA 36 B N ALA 18 D O VAL 30 D O VAL 12 D O VAL 26 D O VAL 8 C N ILE 35 C N ILE 46 C N VAL 36 C N VAL 47 C O PHE 43 C O PHE 54 C N THR 46 C N THR 57 C O TRP 53 C O TRP 64 C N CYS 52 C N CYS 63 C O TRP 85 C O TRP 96 C O GLY 84 C O GLY 95 C N TYR 75 C N TYR 86 C N LEU 106 C N LEU 117 C O ILE 114 C O ILE 125 C N ARG 117 C N ARG 128 C O SER 125 C O SER 136 C N ARG 130 C N ARG 141 C O ALA 164 C O ALA 175 C O ASP 168 C O ASP 179 C N ALA 156 C N ALA 167 C O VAL 151 C O VAL 162 C N LEU 143 C N LEU 154 C O LEU 144 C O LEU 155 C N TYR 105 C N TYR 116 1 A MET -10 A MET 1 1 Y 1 A ALA -9 A ALA 2 1 Y 1 A SER -8 A SER 3 1 Y 1 A MET -7 A MET 4 1 Y 1 A THR -6 A THR 5 1 Y 1 A GLY -5 A GLY 6 1 Y 1 A GLY -4 A GLY 7 1 Y 1 A GLN -3 A GLN 8 1 Y 1 A GLN -2 A GLN 9 1 Y 1 A MET -1 A MET 10 1 Y 1 A GLY 0 A GLY 11 1 Y 1 A GLY 182 A GLY 193 1 Y 1 A SER 183 A SER 194 1 Y 1 A HIS 184 A HIS 195 1 Y 1 A HIS 185 A HIS 196 1 Y 1 A HIS 186 A HIS 197 1 Y 1 A HIS 187 A HIS 198 1 Y 1 A HIS 188 A HIS 199 1 Y 1 A HIS 189 A HIS 200 1 Y 1 B LYS 19 B LYS 1 1 Y 1 C MET -10 C MET 1 1 Y 1 C ALA -9 C ALA 2 1 Y 1 C SER -8 C SER 3 1 Y 1 C MET -7 C MET 4 1 Y 1 C THR -6 C THR 5 1 Y 1 C GLY -5 C GLY 6 1 Y 1 C GLY -4 C GLY 7 1 Y 1 C GLN -3 C GLN 8 1 Y 1 C GLN -2 C GLN 9 1 Y 1 C MET -1 C MET 10 1 Y 1 C GLY 0 C GLY 11 1 Y 1 C ALA 1 C ALA 12 1 Y 1 C PRO 2 C PRO 13 1 Y 1 C ILE 3 C ILE 14 1 Y 1 C THR 4 C THR 15 1 Y 1 C ALA 5 C ALA 16 1 Y 1 C TYR 6 C TYR 17 1 Y 1 C ALA 7 C ALA 18 1 Y 1 C GLN 8 C GLN 19 1 Y 1 C GLN 9 C GLN 20 1 Y 1 C THR 10 C THR 21 1 Y 1 C ARG 11 C ARG 22 1 Y 1 C GLY 12 C GLY 23 1 Y 1 C LEU 13 C LEU 24 1 Y 1 C LEU 14 C LEU 25 1 Y 1 C GLY 15 C GLY 26 1 Y 1 C CYS 16 C CYS 27 1 Y 1 C ILE 17 C ILE 28 1 Y 1 C ILE 18 C ILE 29 1 Y 1 C THR 19 C THR 30 1 Y 1 C SER 20 C SER 31 1 Y 1 C LEU 21 C LEU 32 1 Y 1 C THR 22 C THR 33 1 Y 1 C GLY 23 C GLY 34 1 Y 1 C ARG 24 C ARG 35 1 Y 1 C ASP 25 C ASP 36 1 Y 1 C LYS 26 C LYS 37 1 Y 1 C ASN 27 C ASN 38 1 Y 1 C GLN 28 C GLN 39 1 Y 1 C ARG 180 C ARG 191 1 Y 1 C SER 181 C SER 192 1 Y 1 C GLY 182 C GLY 193 1 Y 1 C SER 183 C SER 194 1 Y 1 C HIS 184 C HIS 195 1 Y 1 C HIS 185 C HIS 196 1 Y 1 C HIS 186 C HIS 197 1 Y 1 C HIS 187 C HIS 198 1 Y 1 C HIS 188 C HIS 199 1 Y 1 C HIS 189 C HIS 200 1 Y 1 D LYS 19 D LYS 1 1 Y 1 D LYS 20 D LYS 2 1 Y 1 D ILE 37 D ILE 19 1 Y 1 D ILE 38 D ILE 20 1 Y 1 D PRO 39 D PRO 21 1 Y 1 D LYS 40 D LYS 22 1 Y 1 D LYS 41 D LYS 23 1 Y 1 A A OE2 O GLU HOH 176 274 0.96 1 A A OD2 O ASP HOH 121 270 1.81 1 A A CE2 O TYR HOH 134 277 2.03 1 A A CD O GLU HOH 176 274 2.12 1 A THR 38 -101.59 -165.28 1 A ASP 81 70.04 42.51 1 C PHE 43 -156.62 -159.66 1 C ASP 121 -38.63 -35.65 1 C SER 122 -141.62 34.57 0.269 0.204 2.20 8.0 2906 31502 29169 92.6 Random 1 Overall THROUGHOUT 1.0 FOURIER SYNTHESIS PDB ENTRY 208M Engh & Huber 2.20 8.0 222 3001 55 0 2724 0.009 1.942 1.248 0.3842 0.4007 2.30 85 964 22 0.3843 0.3554 2.42 232 2441 55 0.3505 0.3107 2.56 407 3748 84 0.3034 0.2811 2.75 421 4185 94 0.2740 0.2326 3.02 440 4367 97 0.2691 0.2052 3.42 439 4435 100 2.20 50.00 3LON 36700 32304 1.0 0.045 1 24.9 9.2 88.0 0.633 2.20 2.24 1.26 0.381 24.8 data collection HKL-2000 model building X-PLOR refinement X-PLOR 98.1 data reduction HKL-2000 data scaling SCALEPACK phasing X-PLOR HCV NS3-4a protease domain with ketoamide inhibitor narlaprevir 1 N N 2 N N 1 N N 2 N N 3 N N 4 N N 5 N N 3 N N 6 N N 6 N N 6 N N 6 N N A GLY 12 A GLY 23 HELX_P A GLY 23 A GLY 34 1 1 12 A TYR 56 A TYR 67 HELX_P A GLY 60 A GLY 71 1 2 5 A ILE 132 A ILE 143 HELX_P A LYS 136 A LYS 147 1 3 5 A VAL 172 A VAL 183 HELX_P A ARG 180 A ARG 191 1 4 9 C TYR 56 C TYR 67 HELX_P C GLY 60 C GLY 71 1 5 5 C ILE 132 C ILE 143 HELX_P C LYS 136 C LYS 147 1 6 5 C VAL 172 C VAL 183 HELX_P C MET 179 C MET 190 1 7 8 covale 2.034 none A CYS 16 A SG CYS 27 1_555 A BME 998 G S2 BME 1_555 covale 1.490 none A SER 139 A OG SER 150 1_555 A NNA 999 F C43 NNA 1_555 metalc 2.084 A CYS 97 A SG CYS 108 1_555 A ZN 901 E ZN ZN 1_555 metalc 2.181 A CYS 99 A SG CYS 110 1_555 A ZN 901 E ZN ZN 1_555 metalc 2.368 A CYS 145 A SG CYS 156 1_555 A ZN 901 E ZN ZN 1_555 metalc 2.016 A HOH 190 I O HOH 1_555 A ZN 901 E ZN ZN 1_555 metalc 2.176 C CYS 97 C SG CYS 108 1_555 C ZN 902 H ZN ZN 1_555 metalc 2.318 C CYS 99 C SG CYS 110 1_555 C ZN 902 H ZN ZN 1_555 metalc 2.115 C CYS 145 C SG CYS 156 1_555 C ZN 902 H ZN ZN 1_555 metalc 2.339 C HOH 190 K O HOH 1_555 C ZN 902 H ZN ZN 1_555 VIRAL PROTEIN/INHIBITOR HEPATITIS C VIRUS, NS3 PROTEASE DOMAIN, SERINE PROTEASE, MACROCYCLIC KETOAMIDE INHIBITOR, HYDROLASE, ATP-binding, Capsid protein, Envelope protein, Helicase, Host membrane, Membrane, Nucleotide-binding, RNA replication, Transmembrane, Virion, VIRAL PROTEIN, VIRAL PROTEIN-INHIBITOR complex Q9ELS8_9HEPC UNP 1 1027 Q9ELS8 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRQGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT RGVAKAVDFIPVENLETTMRS 3LON PDB 2 3LON 1027 1207 3LON 1 181 Q9ELS8 A 1 12 192 1027 1207 3LON 1 181 Q9ELS8 C 1 12 192 19 41 3LON 19 41 3LON B 2 1 23 19 41 3LON 19 41 3LON D 2 1 23 1 expression tag MET -10 3LON A Q9ELS8 UNP 1 1 expression tag ALA -9 3LON A Q9ELS8 UNP 2 1 expression tag SER -8 3LON A Q9ELS8 UNP 3 1 expression tag MET -7 3LON A Q9ELS8 UNP 4 1 expression tag THR -6 3LON A Q9ELS8 UNP 5 1 expression tag GLY -5 3LON A Q9ELS8 UNP 6 1 expression tag GLY -4 3LON A Q9ELS8 UNP 7 1 expression tag GLN -3 3LON A Q9ELS8 UNP 8 1 expression tag GLN -2 3LON A Q9ELS8 UNP 9 1 expression tag MET -1 3LON A Q9ELS8 UNP 10 1 expression tag GLY 0 3LON A Q9ELS8 UNP 11 1 GLN engineered mutation ARG 119 3LON A Q9ELS8 UNP 1145 130 1 expression tag GLY 182 3LON A Q9ELS8 UNP 193 1 expression tag SER 183 3LON A Q9ELS8 UNP 194 1 expression tag HIS 184 3LON A Q9ELS8 UNP 195 1 expression tag HIS 185 3LON A Q9ELS8 UNP 196 1 expression tag HIS 186 3LON A Q9ELS8 UNP 197 1 expression tag HIS 187 3LON A Q9ELS8 UNP 198 1 expression tag HIS 188 3LON A Q9ELS8 UNP 199 1 expression tag HIS 189 3LON A Q9ELS8 UNP 200 2 expression tag MET -10 3LON C Q9ELS8 UNP 1 2 expression tag ALA -9 3LON C Q9ELS8 UNP 2 2 expression tag SER -8 3LON C Q9ELS8 UNP 3 2 expression tag MET -7 3LON C Q9ELS8 UNP 4 2 expression tag THR -6 3LON C Q9ELS8 UNP 5 2 expression tag GLY -5 3LON C Q9ELS8 UNP 6 2 expression tag GLY -4 3LON C Q9ELS8 UNP 7 2 expression tag GLN -3 3LON C Q9ELS8 UNP 8 2 expression tag GLN -2 3LON C Q9ELS8 UNP 9 2 expression tag MET -1 3LON C Q9ELS8 UNP 10 2 expression tag GLY 0 3LON C Q9ELS8 UNP 11 2 GLN engineered mutation ARG 119 3LON C Q9ELS8 UNP 1145 130 2 expression tag GLY 182 3LON C Q9ELS8 UNP 193 2 expression tag SER 183 3LON C Q9ELS8 UNP 194 2 expression tag HIS 184 3LON C Q9ELS8 UNP 195 2 expression tag HIS 185 3LON C Q9ELS8 UNP 196 2 expression tag HIS 186 3LON C Q9ELS8 UNP 197 2 expression tag HIS 187 3LON C Q9ELS8 UNP 198 2 expression tag HIS 188 3LON C Q9ELS8 UNP 199 2 expression tag HIS 189 3LON C Q9ELS8 UNP 200 7 2 7 3 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 6 A TYR 17 A GLN 9 A GLN 20 B VAL 24 B VAL 6 B VAL 30 B VAL 12 A VAL 33 A VAL 44 A SER 37 A SER 48 A THR 42 A THR 53 A ILE 48 A ILE 59 A VAL 51 A VAL 62 A VAL 55 A VAL 66 A LEU 82 A LEU 93 A PRO 86 A PRO 97 A TYR 75 A TYR 86 A ASN 77 A ASN 88 A ILE 64 A ILE 75 A SER 66 A SER 77 A GLY 69 A GLY 80 A VAL 71 A VAL 82 A ASP 103 A ASP 114 A VAL 107 A VAL 118 A VAL 113 A VAL 124 A ARG 118 A ARG 129 A ARG 123 A ARG 134 A PRO 131 A PRO 142 A VAL 163 A VAL 174 A PRO 171 A PRO 182 A ALA 150 A ALA 161 A THR 160 A THR 171 A PRO 142 A PRO 153 A LEU 144 A LEU 155 A ASP 103 A ASP 114 A VAL 107 A VAL 118 B ALA 36 B ALA 18 B ILE 37 B ILE 19 D SER 22 D SER 4 D VAL 30 D VAL 12 C THR 63 C THR 74 C ILE 64 C ILE 75 B ALA 36 B ALA 18 B ILE 37 B ILE 19 D SER 22 D SER 4 D VAL 30 D VAL 12 C VAL 33 C VAL 44 C SER 37 C SER 48 C THR 42 C THR 53 C ILE 48 C ILE 59 C VAL 51 C VAL 62 C VAL 55 C VAL 66 C LEU 82 C LEU 93 C PRO 86 C PRO 97 C TYR 75 C TYR 86 C ASN 77 C ASN 88 C ASP 103 C ASP 114 C VAL 107 C VAL 118 C VAL 113 C VAL 124 C GLY 120 C GLY 131 C ARG 123 C ARG 134 C PRO 131 C PRO 142 C VAL 163 C VAL 174 C PRO 171 C PRO 182 C ALA 150 C ALA 161 C THR 160 C THR 171 C PRO 142 C PRO 153 C LEU 144 C LEU 155 C ASP 103 C ASP 114 C VAL 107 C VAL 118 BINDING SITE FOR RESIDUE ZN A 901 A ZN 901 Software 4 BINDING SITE FOR RESIDUE NNA A 999 A NNA 999 Software 16 BINDING SITE FOR RESIDUE BME A 998 A BME 998 Software 5 BINDING SITE FOR RESIDUE ZN C 902 C ZN 902 Software 4 A CYS 97 A CYS 108 4 1_555 A CYS 99 A CYS 110 4 1_555 A CYS 145 A CYS 156 4 1_555 A HOH 190 I HOH 4 1_555 A GLN 41 A GLN 52 16 1_555 A THR 42 A THR 53 16 1_555 A HIS 57 A HIS 68 16 1_555 A ARG 123 A ARG 134 16 1_555 A ILE 132 A ILE 143 16 1_555 A LYS 136 A LYS 147 16 1_555 A GLY 137 A GLY 148 16 1_555 A SER 138 A SER 149 16 1_555 A SER 139 A SER 150 16 1_555 A ARG 155 A ARG 166 16 1_555 A ALA 156 A ALA 167 16 1_555 A ALA 157 A ALA 168 16 1_555 A VAL 158 A VAL 169 16 1_555 A CYS 159 A CYS 170 16 1_555 A ASP 168 A ASP 179 16 1_555 A HOH 202 I HOH 16 1_555 A LEU 13 A LEU 24 5 1_555 A CYS 16 A CYS 27 5 1_555 A ILE 17 A ILE 28 5 1_555 A THR 38 A THR 49 5 1_555 A ALA 39 A ALA 50 5 1_555 C CYS 97 C CYS 108 4 1_555 C CYS 99 C CYS 110 4 1_555 C CYS 145 C CYS 156 4 1_555 C HOH 190 K HOH 4 1_555 155 H 3 2