0.009911 0.005722 0.000000 0.000000 0.011444 0.000000 0.000000 0.000000 0.021383 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 100.901 100.901 46.765 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N C N 77 N O N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 S C N 86 N C N 87 N O N 88 N C N 89 N C N 90 N C N 91 N O N 92 N N N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N N N 105 S C N 106 N C N 107 N O N 108 N C N 109 N C N 110 N C N 111 N O N 112 N O N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 N C N 125 N C N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N N N 134 S C N 135 N C N 136 N O N 137 N C Y 138 N C Y 139 N N Y 140 N C Y 141 N C Y 142 N N N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N O N 155 N H N 156 N H N 157 N N N 158 S C N 159 N C N 160 N O N 161 S C N 162 N C N 163 N C N 164 N C N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N C N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N C N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N O N 231 N C N 232 N C N 233 N SE N 234 N C N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 N C Y 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C N 291 N O N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 R C N 305 N O N 306 N C N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C N 328 N O N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N C N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N doub Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing Y 244 N doub Y 245 N sing Y 246 N sing N 247 N sing Y 248 N doub N 249 N sing Y 250 N doub N 251 N sing Y 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing Y 313 N doub Y 314 N sing Y 315 N sing N 316 N sing Y 317 N doub N 318 N sing Y 319 N doub N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing To be published 0353 Crystal structure of domain of unknown function (YP_050007.1) from Erwinia carotovora atroseptica SCRI1043 at 2.20 A resolution 10.2210/pdb3cjl/pdb pdb_00003cjl 100 1 Flat collimating mirror, toroid focusing mirror CCD 2008-02-21 MARMOSAIC 325 mm CCD Double crystal SINGLE WAVELENGTH M x-ray 1 0.97908 1.0 BL9-2 SSRL 0.97908 SYNCHROTRON SSRL BEAMLINE BL9-2 10765.312 Domain of unknown function 2 man polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 18.015 water 56 nat water no yes G(MSE)GNIYQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGK(MSE)D(MSE)TPEQTQAF(MSE)VGLKLFGEV (MSE)(MSE)QQRKHPLFKEFSAPFRAF(MSE)(MSE)NLKKQ GMGNIYQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPEQTQAFMVGLKLFGEVMMQQRKHPLFKEFSAPFRA FMMNLKKQ A,B 367548 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pectobacterium Pectobacterium atrosepticum SCRI 1043 Escherichia sample BAA-672 YP_050007.1, ECA1910 218491 Pectobacterium atrosepticum SCRI1043 562 Escherichia coli HK100 Plasmid SpeedET 1 3.19 61.46 VAPOR DIFFUSION, SITTING DROP 7.5 NANODROP, 1.4M Na3Citrate, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software software struct_conn database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_entry_details pdbx_modification_feature struct_ncs_dom_lim repository Initial release Advisory Version format compliance Refinement description Data collection Derived calculations Refinement description Database references Derived calculations Data collection Refinement description Structure summary 1 0 2008-04-01 1 1 2011-07-13 1 2 2017-10-25 1 3 2019-07-24 1 4 2023-02-01 1 5 2024-11-13 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _pdbx_entry_details.has_protein_modification _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id Y RCSB Y RCSB 2008-03-13 REL REL EDO 1,2-ETHANEDIOL HOH water Y THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. A MSE 1 Named protein modification A MSE 2 MET MSE 1 1_555 Selenomethionine A MSE 40 Named protein modification A MSE 41 MET MSE 1 1_555 Selenomethionine A MSE 42 Named protein modification A MSE 43 MET MSE 1 1_555 Selenomethionine A MSE 51 Named protein modification A MSE 52 MET MSE 1 1_555 Selenomethionine A MSE 61 Named protein modification A MSE 62 MET MSE 1 1_555 Selenomethionine A MSE 62 Named protein modification A MSE 63 MET MSE 1 1_555 Selenomethionine A MSE 81 Named protein modification A MSE 82 MET MSE 1 1_555 Selenomethionine A MSE 82 Named protein modification A MSE 83 MET MSE 1 1_555 Selenomethionine B MSE 1 Named protein modification B MSE 2 MET MSE 1 1_555 Selenomethionine B MSE 40 Named protein modification B MSE 41 MET MSE 1 1_555 Selenomethionine B MSE 42 Named protein modification B MSE 43 MET MSE 1 1_555 Selenomethionine B MSE 51 Named protein modification B MSE 52 MET MSE 1 1_555 Selenomethionine B MSE 61 Named protein modification B MSE 62 MET MSE 1 1_555 Selenomethionine B MSE 62 Named protein modification B MSE 63 MET MSE 1 1_555 Selenomethionine B MSE 81 Named protein modification B MSE 82 MET MSE 1 1_555 Selenomethionine B MSE 82 Named protein modification B MSE 83 MET MSE 1 1_555 Selenomethionine EDO 1 2 EDO EDO 88 A HOH 5 3 HOH HOH 89 A HOH 7 3 HOH HOH 90 A HOH 9 3 HOH HOH 91 A HOH 10 3 HOH HOH 92 A HOH 12 3 HOH HOH 93 A HOH 13 3 HOH HOH 94 A HOH 16 3 HOH HOH 95 A HOH 18 3 HOH HOH 96 A HOH 22 3 HOH HOH 97 A HOH 24 3 HOH HOH 98 A HOH 27 3 HOH HOH 99 A HOH 29 3 HOH HOH 100 A HOH 30 3 HOH HOH 101 A HOH 35 3 HOH HOH 102 A HOH 36 3 HOH HOH 103 A HOH 37 3 HOH HOH 104 A HOH 39 3 HOH HOH 105 A HOH 40 3 HOH HOH 106 A HOH 41 3 HOH HOH 107 A HOH 43 3 HOH HOH 108 A HOH 44 3 HOH HOH 109 A HOH 45 3 HOH HOH 110 A HOH 46 3 HOH HOH 111 A HOH 48 3 HOH HOH 112 A HOH 50 3 HOH HOH 113 A HOH 51 3 HOH HOH 114 A HOH 52 3 HOH HOH 115 A HOH 53 3 HOH HOH 116 A HOH 56 3 HOH HOH 117 A HOH 57 3 HOH HOH 118 A HOH 2 3 HOH HOH 88 B HOH 3 3 HOH HOH 89 B HOH 4 3 HOH HOH 90 B HOH 6 3 HOH HOH 91 B HOH 8 3 HOH HOH 92 B HOH 11 3 HOH HOH 93 B HOH 14 3 HOH HOH 94 B HOH 15 3 HOH HOH 95 B HOH 17 3 HOH HOH 96 B HOH 19 3 HOH HOH 97 B HOH 20 3 HOH HOH 98 B HOH 21 3 HOH HOH 99 B HOH 23 3 HOH HOH 100 B HOH 25 3 HOH HOH 101 B HOH 26 3 HOH HOH 102 B HOH 28 3 HOH HOH 103 B HOH 31 3 HOH HOH 104 B HOH 32 3 HOH HOH 105 B HOH 33 3 HOH HOH 106 B HOH 34 3 HOH HOH 107 B HOH 38 3 HOH HOH 108 B HOH 42 3 HOH HOH 109 B HOH 47 3 HOH HOH 110 B HOH 49 3 HOH HOH 111 B HOH 54 3 HOH HOH 112 B HOH 55 3 HOH HOH 113 B GLY 0 n 1 GLY 0 A MSE 1 n 2 MSE 1 A GLY 2 n 3 GLY 2 A ASN 3 n 4 ASN 3 A ILE 4 n 5 ILE 4 A TYR 5 n 6 TYR 5 A GLN 6 n 7 GLN 6 A ILE 7 n 8 ILE 7 A THR 8 n 9 THR 8 A VAL 9 n 10 VAL 9 A GLU 10 n 11 GLU 10 A GLU 11 n 12 GLU 11 A LYS 12 n 13 LYS 12 A ALA 13 n 14 ALA 13 A GLU 14 n 15 GLU 14 A HIS 15 n 16 HIS 15 A GLN 16 n 17 GLN 16 A ARG 17 n 18 ARG 17 A THR 18 n 19 THR 18 A LEU 19 n 20 LEU 19 A SER 20 n 21 SER 20 A PHE 21 n 22 PHE 21 A GLU 22 n 23 GLU 22 A PHE 23 n 24 PHE 23 A SER 24 n 25 SER 24 A LEU 25 n 26 LEU 25 A HIS 26 n 27 HIS 26 A ASP 27 n 28 ASP 27 A ASP 28 n 29 ASP 28 A LEU 29 n 30 LEU 29 A PHE 30 n 31 PHE 30 A LYS 31 n 32 LYS 31 A LEU 32 n 33 LEU 32 A LEU 33 n 34 LEU 33 A GLU 34 n 35 GLU 34 A LYS 35 n 36 LYS 35 A VAL 36 n 37 VAL 36 A ASP 37 n 38 ASP 37 A GLY 38 n 39 GLY 38 A LYS 39 n 40 LYS 39 A MSE 40 n 41 MSE 40 A ASP 41 n 42 ASP 41 A MSE 42 n 43 MSE 42 A THR 43 n 44 THR 43 A PRO 44 n 45 PRO 44 A GLU 45 n 46 GLU 45 A GLN 46 n 47 GLN 46 A THR 47 n 48 THR 47 A GLN 48 n 49 GLN 48 A ALA 49 n 50 ALA 49 A PHE 50 n 51 PHE 50 A MSE 51 n 52 MSE 51 A VAL 52 n 53 VAL 52 A GLY 53 n 54 GLY 53 A LEU 54 n 55 LEU 54 A LYS 55 n 56 LYS 55 A LEU 56 n 57 LEU 56 A PHE 57 n 58 PHE 57 A GLY 58 n 59 GLY 58 A GLU 59 n 60 GLU 59 A VAL 60 n 61 VAL 60 A MSE 61 n 62 MSE 61 A MSE 62 n 63 MSE 62 A GLN 63 n 64 GLN 63 A GLN 64 n 65 GLN 64 A ARG 65 n 66 ARG 65 A LYS 66 n 67 LYS 66 A HIS 67 n 68 HIS 67 A PRO 68 n 69 PRO 68 A LEU 69 n 70 LEU 69 A PHE 70 n 71 PHE 70 A LYS 71 n 72 LYS 71 A GLU 72 n 73 GLU 72 A PHE 73 n 74 PHE 73 A SER 74 n 75 SER 74 A ALA 75 n 76 ALA 75 A PRO 76 n 77 PRO 76 A PHE 77 n 78 PHE 77 A ARG 78 n 79 ARG 78 A ALA 79 n 80 ALA 79 A PHE 80 n 81 PHE 80 A MSE 81 n 82 MSE 81 A MSE 82 n 83 MSE 82 A ASN 83 n 84 ASN 83 A LEU 84 n 85 LEU 84 A LYS 85 n 86 LYS 85 A LYS 86 n 87 LYS 86 A GLN 87 n 88 GLN 87 A n 1 0 B MSE 1 n 2 MSE 1 B GLY 2 n 3 GLY 2 B ASN 3 n 4 ASN 3 B ILE 4 n 5 ILE 4 B TYR 5 n 6 TYR 5 B GLN 6 n 7 GLN 6 B ILE 7 n 8 ILE 7 B THR 8 n 9 THR 8 B VAL 9 n 10 VAL 9 B GLU 10 n 11 GLU 10 B GLU 11 n 12 GLU 11 B LYS 12 n 13 LYS 12 B ALA 13 n 14 ALA 13 B GLU 14 n 15 GLU 14 B HIS 15 n 16 HIS 15 B GLN 16 n 17 GLN 16 B ARG 17 n 18 ARG 17 B THR 18 n 19 THR 18 B LEU 19 n 20 LEU 19 B SER 20 n 21 SER 20 B PHE 21 n 22 PHE 21 B GLU 22 n 23 GLU 22 B PHE 23 n 24 PHE 23 B SER 24 n 25 SER 24 B LEU 25 n 26 LEU 25 B HIS 26 n 27 HIS 26 B ASP 27 n 28 ASP 27 B ASP 28 n 29 ASP 28 B LEU 29 n 30 LEU 29 B PHE 30 n 31 PHE 30 B LYS 31 n 32 LYS 31 B LEU 32 n 33 LEU 32 B LEU 33 n 34 LEU 33 B GLU 34 n 35 GLU 34 B LYS 35 n 36 LYS 35 B VAL 36 n 37 VAL 36 B ASP 37 n 38 ASP 37 B GLY 38 n 39 GLY 38 B LYS 39 n 40 LYS 39 B MSE 40 n 41 MSE 40 B ASP 41 n 42 ASP 41 B MSE 42 n 43 MSE 42 B THR 43 n 44 THR 43 B PRO 44 n 45 PRO 44 B GLU 45 n 46 GLU 45 B GLN 46 n 47 GLN 46 B THR 47 n 48 THR 47 B GLN 48 n 49 GLN 48 B ALA 49 n 50 ALA 49 B PHE 50 n 51 PHE 50 B MSE 51 n 52 MSE 51 B VAL 52 n 53 VAL 52 B GLY 53 n 54 GLY 53 B LEU 54 n 55 LEU 54 B LYS 55 n 56 LYS 55 B LEU 56 n 57 LEU 56 B PHE 57 n 58 PHE 57 B GLY 58 n 59 GLY 58 B GLU 59 n 60 GLU 59 B VAL 60 n 61 VAL 60 B MSE 61 n 62 MSE 61 B MSE 62 n 63 MSE 62 B GLN 63 n 64 GLN 63 B GLN 64 n 65 GLN 64 B ARG 65 n 66 ARG 65 B LYS 66 n 67 LYS 66 B HIS 67 n 68 HIS 67 B PRO 68 n 69 PRO 68 B LEU 69 n 70 LEU 69 B PHE 70 n 71 PHE 70 B LYS 71 n 72 LYS 71 B GLU 72 n 73 GLU 72 B PHE 73 n 74 PHE 73 B SER 74 n 75 SER 74 B ALA 75 n 76 ALA 75 B PRO 76 n 77 PRO 76 B PHE 77 n 78 PHE 77 B ARG 78 n 79 ARG 78 B ALA 79 n 80 ALA 79 B PHE 80 n 81 PHE 80 B MSE 81 n 82 MSE 81 B MSE 82 n 83 MSE 82 B ASN 83 n 84 ASN 83 B LEU 84 n 85 LEU 84 B LYS 85 n 86 LYS 85 B LYS 86 n 87 LYS 86 B GLN 87 n 88 GLN 87 B 2.7251 0.0148 -0.8400 2.1028 -0.1646 2.7297 0.0255 -0.1037 0.1725 0.1949 0.1071 -0.0213 -0.2905 -0.2015 -0.1326 -0.0906 -0.0635 0.0241 -0.0483 0.0066 -0.1234 refined -19.1033 51.0241 2.3297 X-RAY DIFFRACTION 2.2099 0.3238 0.7886 1.8926 -0.1640 3.9883 0.0190 0.1483 0.0180 -0.0926 0.0888 -0.2372 -0.0767 0.1499 -0.1077 -0.1248 -0.0395 0.0033 -0.0983 -0.0073 -0.0674 refined -12.1247 50.9442 -3.1863 X-RAY DIFFRACTION A 0 A 1 A 87 A 88 X-RAY DIFFRACTION 1 B 1 B 2 B 87 B 88 X-RAY DIFFRACTION 2 software_defined_assembly PISA 2 dimeric 4180 -33.5 9580 A MSE 1 SELENOMETHIONINE A MSE 2 MET A MSE 40 SELENOMETHIONINE A MSE 41 MET A MSE 42 SELENOMETHIONINE A MSE 43 MET A MSE 51 SELENOMETHIONINE A MSE 52 MET A MSE 61 SELENOMETHIONINE A MSE 62 MET A MSE 62 SELENOMETHIONINE A MSE 63 MET A MSE 81 SELENOMETHIONINE A MSE 82 MET A MSE 82 SELENOMETHIONINE A MSE 83 MET B MSE 1 SELENOMETHIONINE B MSE 2 MET B MSE 40 SELENOMETHIONINE B MSE 41 MET B MSE 42 SELENOMETHIONINE B MSE 43 MET B MSE 51 SELENOMETHIONINE B MSE 52 MET B MSE 61 SELENOMETHIONINE B MSE 62 MET B MSE 62 SELENOMETHIONINE B MSE 63 MET B MSE 81 SELENOMETHIONINE B MSE 82 MET B MSE 82 SELENOMETHIONINE B MSE 83 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 21 A O PHE 22 A N ILE 7 A N ILE 8 A N GLU 10 A N GLU 11 B O GLN 6 B O GLN 7 B N ASN 3 B N ASN 4 B O LEU 25 B O LEU 26 1 A CE LYS 12 A CE LYS 13 1 Y 1 A NZ LYS 12 A NZ LYS 13 1 Y 1 A CG GLU 14 A CG GLU 15 1 Y 1 A CD GLU 14 A CD GLU 15 1 Y 1 A OE1 GLU 14 A OE1 GLU 15 1 Y 1 A OE2 GLU 14 A OE2 GLU 15 1 Y 1 A CG GLU 45 A CG GLU 46 1 Y 1 A CD GLU 45 A CD GLU 46 1 Y 1 A OE1 GLU 45 A OE1 GLU 46 1 Y 1 A OE2 GLU 45 A OE2 GLU 46 1 Y 1 A CG LYS 66 A CG LYS 67 1 Y 1 A CD LYS 66 A CD LYS 67 1 Y 1 A CE LYS 66 A CE LYS 67 1 Y 1 A NZ LYS 66 A NZ LYS 67 1 Y 1 A CG GLU 72 A CG GLU 73 1 Y 1 A CD GLU 72 A CD GLU 73 1 Y 1 A OE1 GLU 72 A OE1 GLU 73 1 Y 1 A OE2 GLU 72 A OE2 GLU 73 1 Y 1 B CG GLU 14 B CG GLU 15 1 Y 1 B CD GLU 14 B CD GLU 15 1 Y 1 B OE1 GLU 14 B OE1 GLU 15 1 Y 1 B OE2 GLU 14 B OE2 GLU 15 1 Y 1 B CG HIS 15 B CG HIS 16 1 Y 1 B ND1 HIS 15 B ND1 HIS 16 1 Y 1 B CD2 HIS 15 B CD2 HIS 16 1 Y 1 B CE1 HIS 15 B CE1 HIS 16 1 Y 1 B NE2 HIS 15 B NE2 HIS 16 1 Y 1 B CD LYS 35 B CD LYS 36 1 Y 1 B CE LYS 35 B CE LYS 36 1 Y 1 B NZ LYS 35 B NZ LYS 36 1 Y 1 B CG LYS 39 B CG LYS 40 1 Y 1 B CD LYS 39 B CD LYS 40 1 Y 1 B CE LYS 39 B CE LYS 40 1 Y 1 B NZ LYS 39 B NZ LYS 40 1 Y 1 B CG ASP 41 B CG ASP 42 1 Y 1 B OD1 ASP 41 B OD1 ASP 42 1 Y 1 B OD2 ASP 41 B OD2 ASP 42 1 Y 1 B CE LYS 66 B CE LYS 67 1 Y 1 B NZ LYS 66 B NZ LYS 67 1 Y 1 B CG GLN 87 B CG GLN 88 1 Y 1 B CD GLN 87 B CD GLN 88 1 Y 1 B OE1 GLN 87 B OE1 GLN 88 1 Y 1 B NE2 GLN 87 B NE2 GLN 88 1 Y 1 B GLY 0 B GLY 1 1 Y 1 A GLU 14 57.29 -116.49 1 B ALA 13 -108.59 -165.29 1 B GLU 14 64.66 -135.31 34.586 0.950 0.480 0.000 0.950 0.000 -1.430 0.954 0.938 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 0.220 0.194 0.195 2.200 29.123 695 13985 5.000 99.940 9.998 0.125 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 SAD 0.194 0.164 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 2.200 29.123 56 1465 4 0 1405 0.014 0.022 1449 0.002 0.020 1017 1.443 1.964 1939 1.039 3.000 2482 4.531 5.000 177 37.159 24.559 68 13.252 15.000 278 12.267 15.000 6 0.086 0.200 207 0.005 0.020 1589 0.002 0.020 301 0.171 0.200 304 0.153 0.200 975 0.169 0.200 700 0.085 0.200 740 0.133 0.200 48 0.218 0.200 13 0.223 0.200 41 0.106 0.200 7 2.203 3.000 990 0.489 3.000 353 2.784 5.000 1405 4.979 8.000 606 6.506 11.000 532 1 A 1 1121 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.660 0.500 1 A 1 1121 X-RAY DIFFRACTION MEDIUM THERMAL 1.040 2.000 0.296 0.225 2.257 51 966 1017 20 100.000 39.316 2.20 29.123 3CJL 14004 0.106 0.106 1 5.100 7.300 99.900 0.716 2.20 2.26 1.1 7582 1022 0.716 1 7.40 100.00 0.611 2.26 2.32 1.3 7596 1017 0.611 1 7.50 100.00 0.487 2.32 2.39 1.6 7068 948 0.487 1 7.50 100.00 0.416 2.39 2.46 1.9 7240 973 0.416 1 7.40 100.00 0.348 2.46 2.54 2.2 6727 899 0.348 1 7.50 100.00 0.282 2.54 2.63 2.7 6562 882 0.282 1 7.40 100.00 0.229 2.63 2.73 3.4 6523 874 0.229 1 7.50 100.00 0.183 2.73 2.84 4.2 6038 809 0.183 1 7.50 100.00 0.164 2.84 2.97 4.6 5954 799 0.164 1 7.50 100.00 0.129 2.97 3.11 5.7 5755 768 0.129 1 7.50 100.00 0.111 3.11 3.28 6.4 5398 727 0.111 1 7.40 100.00 0.092 3.28 3.48 7.4 5047 683 0.092 1 7.40 100.00 0.082 3.48 3.72 8.1 4727 642 0.082 1 7.40 100.00 0.073 3.72 4.02 9.1 4350 593 0.073 1 7.30 100.00 0.070 4.02 4.40 9.8 4060 563 0.070 1 7.20 100.00 0.068 4.40 4.92 9.4 3555 497 0.068 1 7.20 100.00 0.079 4.92 5.68 8.1 3101 457 0.079 1 6.80 100.00 0.090 5.68 6.96 7.2 2431 383 0.090 1 6.30 100.00 0.065 6.96 9.84 9.2 1837 302 0.065 1 6.10 100.00 0.065 9.84 29.123 9.1 930 166 0.065 1 5.60 94.80 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other data extraction PDB sw-help@rcsb.rutgers.edu July 2, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.000 data collection MAR345 CCD data reduction MOSFLM Crystal structure of a protein of unknown function (eca1910) from pectobacterium atrosepticum scri1043 at 2.20 A resolution 1 N N 1 N N 2 N N 3 N N 3 N N A ASP 28 A ASP 29 HELX_P A ASP 37 A ASP 38 1 1 10 A THR 43 A THR 44 HELX_P A GLN 64 A GLN 65 1 2 22 A HIS 67 A HIS 68 HELX_P A GLU 72 A GLU 73 1 3 6 A PHE 73 A PHE 74 HELX_P A LYS 86 A LYS 87 1 4 14 B ASP 28 B ASP 29 HELX_P B ASP 37 B ASP 38 1 5 10 B THR 43 B THR 44 HELX_P B GLN 64 B GLN 65 1 6 22 B HIS 67 B HIS 68 HELX_P B GLU 72 B GLU 73 1 7 6 B PHE 73 B PHE 74 HELX_P B GLN 87 B GLN 88 1 8 15 covale 1.327 both A GLY 0 A C GLY 1 1_555 A MSE 1 A N MSE 2 1_555 covale 1.331 both A MSE 1 A C MSE 2 1_555 A GLY 2 A N GLY 3 1_555 covale 1.332 both A LYS 39 A C LYS 40 1_555 A MSE 40 A N MSE 41 1_555 covale 1.333 both A MSE 40 A C MSE 41 1_555 A ASP 41 A N ASP 42 1_555 covale 1.336 both A ASP 41 A C ASP 42 1_555 A MSE 42 A N MSE 43 1_555 covale 1.328 both A MSE 42 A C MSE 43 1_555 A THR 43 A N THR 44 1_555 covale 1.327 both A PHE 50 A C PHE 51 1_555 A MSE 51 A N MSE 52 1_555 covale 1.330 both A MSE 51 A C MSE 52 1_555 A VAL 52 A N VAL 53 1_555 covale 1.316 both A VAL 60 A C VAL 61 1_555 A MSE 61 A N MSE 62 1_555 covale 1.335 both A MSE 61 A C MSE 62 1_555 A MSE 62 A N MSE 63 1_555 covale 1.333 both A MSE 62 A C MSE 63 1_555 A GLN 63 A N GLN 64 1_555 covale 1.328 both A PHE 80 A C PHE 81 1_555 A MSE 81 A N MSE 82 1_555 covale 1.330 both A MSE 81 A C MSE 82 1_555 A MSE 82 A N MSE 83 1_555 covale 1.329 both A MSE 82 A C MSE 83 1_555 A ASN 83 A N ASN 84 1_555 covale 1.329 both B MSE 1 B C MSE 2 1_555 B GLY 2 B N GLY 3 1_555 covale 1.340 both B LYS 39 B C LYS 40 1_555 B MSE 40 B N MSE 41 1_555 covale 1.338 both B MSE 40 B C MSE 41 1_555 B ASP 41 B N ASP 42 1_555 covale 1.334 both B ASP 41 B C ASP 42 1_555 B MSE 42 B N MSE 43 1_555 covale 1.333 both B MSE 42 B C MSE 43 1_555 B THR 43 B N THR 44 1_555 covale 1.327 both B PHE 50 B C PHE 51 1_555 B MSE 51 B N MSE 52 1_555 covale 1.332 both B MSE 51 B C MSE 52 1_555 B VAL 52 B N VAL 53 1_555 covale 1.329 both B VAL 60 B C VAL 61 1_555 B MSE 61 B N MSE 62 1_555 covale 1.330 both B MSE 61 B C MSE 62 1_555 B MSE 62 B N MSE 63 1_555 covale 1.332 both B MSE 62 B C MSE 63 1_555 B GLN 63 B N GLN 64 1_555 covale 1.337 both B PHE 80 B C PHE 81 1_555 B MSE 81 B N MSE 82 1_555 covale 1.316 both B MSE 81 B C MSE 82 1_555 B MSE 82 B N MSE 83 1_555 covale 1.332 both B MSE 82 B C MSE 83 1_555 B ASN 83 B N ASN 84 1_555 UNKNOWN FUNCTION Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function A B A ASN 3 A ASN 4 A LYS 86 A LYS 87 4 B ASN 3 B ASN 4 B LYS 86 B LYS 87 4 Q6D5X8_ERWCT UNP 1 1 Q6D5X8 MGNIYQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPEQTQAFMVGLKLFGEVMMQQRKHPLFKEFSAPFRAF MMNLKKQ 1 87 3CJL 1 87 Q6D5X8 A 1 2 88 1 87 3CJL 1 87 Q6D5X8 B 1 2 88 1 expression tag GLY 0 3CJL A Q6D5X8 UNP 1 2 expression tag GLY 0 3CJL B Q6D5X8 UNP 1 4 anti-parallel anti-parallel anti-parallel A THR 18 A THR 19 A LEU 25 A LEU 26 A ASN 3 A ASN 4 A GLU 11 A GLU 12 B ASN 3 B ASN 4 B GLU 11 B GLU 12 B THR 18 B THR 19 B LEU 25 B LEU 26 BINDING SITE FOR RESIDUE EDO A 88 A EDO 88 Software 1 A LYS 55 A LYS 56 1 1_555 169 P 61