1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Isogai, S. Morimoto, D. Arita, K. Unzai, S. Tenno, T. Hasegawa, J. Sou, Y. Komatsu, M. Tanaka, K. Shirakawa, M. Tochio, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N S N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C Y 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N C Y 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N O N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 R C N 292 N O N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N N Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C N 342 N O N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing Y 233 N doub Y 234 N sing Y 235 N sing N 236 N sing Y 237 N doub N 238 N sing Y 239 N doub N 240 N sing Y 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub Y 307 N sing Y 308 N sing N 309 N sing Y 310 N sing Y 311 N doub N 312 N sing Y 313 N doub N 314 N sing Y 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N doub N 335 N sing Y 336 N doub N 337 N sing Y 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing To be Published 0353 Crystal structure of the UBA omain of p62 and its interaction with ubiquitin 10.2210/pdb2rru/pdb pdb_00002rru 10.13018/BMR11443 5817.500 Sequestosome-1 UBA domain (UNP RESIDUES 393-438) 1 man polymer STONE14, Ubiquitin-binding protein p62 no no GPLGSEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH GPLGSEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample SQSTM1, A170, STAP 10090 Mus musculus 562 Escherichia coli PGEX-6P1 VECTOR database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Data collection Database references Other Data collection Database references 1 0 2011-06-29 1 1 2011-07-13 1 2 2023-06-14 1 3 2024-05-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details _database_2.pdbx_DOI BMRB Y PDBJ 2011-06-09 REL REL REL REL STRUCTURES WITH THE LOWEST ENER 100 20 1 2D 1H-15N HSQC 2D 1H-13C HSQC 3D CBCA(CO)NH 3D HNCACB 3D HNCO 3D HBHA(CO)NH 3D H(CCO)N 3D C(CO)NH 3D 1H-15N NOESY 3D 1H-13C NOESY 3D HN(CA)CO 0.4 mM [U-95% 13C; U-95% 15N] 2.4 mM 10 % [U-2H] 20 mM 5 mM 1 mM 10 % 0.025 6.8 AMBIENT 298 K DGSA-distance geometry simulated annealing, DGSA-DISTANCE GEOMETRY SIMULATE ANNEALING 1 lowest energy 0.4 mM [U-95% 13C; U-95% 15N] P62/SEQUESTOSOME-1-1, 2.4 mM Ubiquitin-2, 10 % [U-2H] D2O-3, 20 mM potassium phosphate-4, 5 mM potassium chloride-5, 1 mM EDTA-6, 10 % D2O-7, 90% H2O/10% D2O 90% H2O/10% D2O GUNTERT, MUMENTHALER refinement CYANA 2.1 GUNTERT, MUMENTHALER structure solution CYANA 2.1 Goddard data analysis Sparky 3.113 Goddard peak picking Sparky 3.113 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Bruker Biospin collection TopSpin Herrmann, Guntert and Wuthrich chemical shift assignment CANDID Herrmann and Wuthrich peak picking ATNOS Keller and Wuthrich chemical shift assignment CARA 700 Bruker AVANCE BRUKER AVANCE GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A LEU 3 n 3 LEU 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A GLU 6 n 6 GLU 6 A ALA 7 n 7 ALA 7 A ASP 8 n 8 ASP 8 A PRO 9 n 9 PRO 9 A ARG 10 n 10 ARG 10 A LEU 11 n 11 LEU 11 A ILE 12 n 12 ILE 12 A GLU 13 n 13 GLU 13 A SER 14 n 14 SER 14 A LEU 15 n 15 LEU 15 A SER 16 n 16 SER 16 A GLN 17 n 17 GLN 17 A MET 18 n 18 MET 18 A LEU 19 n 19 LEU 19 A SER 20 n 20 SER 20 A MET 21 n 21 MET 21 A GLY 22 n 22 GLY 22 A PHE 23 n 23 PHE 23 A SER 24 n 24 SER 24 A ASP 25 n 25 ASP 25 A GLU 26 n 26 GLU 26 A GLY 27 n 27 GLY 27 A GLY 28 n 28 GLY 28 A TRP 29 n 29 TRP 29 A LEU 30 n 30 LEU 30 A THR 31 n 31 THR 31 A ARG 32 n 32 ARG 32 A LEU 33 n 33 LEU 33 A LEU 34 n 34 LEU 34 A GLN 35 n 35 GLN 35 A THR 36 n 36 THR 36 A LYS 37 n 37 LYS 37 A ASN 38 n 38 ASN 38 A TYR 39 n 39 TYR 39 A ASP 40 n 40 ASP 40 A ILE 41 n 41 ILE 41 A GLY 42 n 42 GLY 42 A ALA 43 n 43 ALA 43 A ALA 44 n 44 ALA 44 A LEU 45 n 45 LEU 45 A ASP 46 n 46 ASP 46 A THR 47 n 47 THR 47 A ILE 48 n 48 ILE 48 A GLN 49 n 49 GLN 49 A TYR 50 n 50 TYR 50 A SER 51 n 51 SER 51 A LYS 52 n 52 LYS 52 A HIS 53 n 53 HIS 53 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A PRO 2 -69.78 96.71 2 A LEU 3 53.67 79.69 2 A SER 5 -98.35 51.48 2 A SER 51 -177.66 -67.45 3 A GLU 6 62.99 174.69 3 A SER 51 -178.47 -176.96 4 A PRO 2 -69.80 -179.06 4 A SER 51 -110.25 -74.20 5 A LEU 3 60.79 176.75 5 A GLU 26 -51.96 109.87 5 A TYR 50 -171.72 133.55 5 A SER 51 -177.08 -60.67 6 A SER 51 -177.02 -74.25 6 A LYS 52 -131.94 -42.31 7 A LEU 3 -177.68 107.71 7 A TYR 50 -170.90 134.93 7 A SER 51 -175.76 -74.28 7 A LYS 52 -132.32 -41.51 8 A SER 5 -102.20 72.04 8 A ALA 7 -121.81 -169.58 8 A TYR 50 -173.28 141.22 8 A SER 51 -177.65 -74.45 9 A GLU 6 -66.96 -178.23 9 A ALA 7 -124.42 -169.48 9 A SER 51 -177.60 -61.51 10 A LEU 3 -178.73 146.74 10 A SER 5 -89.11 -70.21 10 A GLU 6 61.74 170.18 10 A TYR 50 -172.37 133.49 10 A SER 51 -178.30 -70.00 11 A TYR 50 -152.33 -42.25 11 A LYS 52 -140.50 -53.70 12 A LEU 3 -170.84 132.88 12 A TYR 50 -177.46 -44.05 12 A SER 51 -62.40 -175.66 12 A LYS 52 -133.07 -66.27 14 A LEU 3 59.47 91.96 14 A TYR 50 -171.93 133.27 14 A SER 51 -177.29 -69.92 15 A TYR 50 -172.02 133.64 15 A SER 51 -176.88 -60.92 16 A LEU 3 52.00 74.15 16 A TYR 50 -156.11 -40.40 17 A GLU 6 62.96 168.86 17 A TYR 50 -174.29 133.66 17 A SER 51 -177.34 -168.91 17 A LYS 52 -103.46 -66.79 18 A TYR 50 -172.81 -39.76 18 A SER 51 64.58 151.37 19 A LEU 3 62.83 166.15 19 A SER 5 -141.45 -55.51 19 A SER 51 -176.56 -74.40 19 A LYS 52 -132.88 -41.60 20 A SER 5 -141.28 52.62 20 A SER 51 -177.95 -60.01 lowest energy, model 1 Solution structure of the UBA omain of p62 and its interaction with ubiquitin 1 N N A ASP 8 A ASP 8 HELX_P A GLY 22 A GLY 22 1 1 15 A ARG 32 A ARG 32 HELX_P A LYS 37 A LYS 37 1 2 6 A ALA 43 A ALA 43 HELX_P A THR 47 A THR 47 5 3 5 PROTEIN BINDING UBIQUITIN, UBA DOMAIN, P62/SQSTM1, Autophagy, PROTEIN BINDING SQSTM_MOUSE UNP 1 391 Q64337 EADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH 391 438 2RRU 6 53 Q64337 A 1 6 53 1 expression tag GLY 1 2RRU A Q64337 UNP 1 1 expression tag PRO 2 2RRU A Q64337 UNP 2 1 expression tag LEU 3 2RRU A Q64337 UNP 3 1 expression tag GLY 4 2RRU A Q64337 UNP 4 1 expression tag SER 5 2RRU A Q64337 UNP 5