0.006306 0.003641 0.000000 0.000000 0.007282 0.000000 0.000000 0.000000 0.007040 0.00000 0.00000 0.00000 Nowotny, M. Gaidamakov, S.A. Ghirlando, R. Cerritelli, S.M. Crouch, R.J. Yang, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 158.578 158.578 142.055 C6 H16 N2 116.205 HEXANE-1,6-DIAMINE 1,6-DIAMINOHEXANE non-polymer C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C6 H5 O7 -3 189.100 CITRATE ANION non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N C N 4 N C N 5 N C N 6 N C N 7 N C N 8 N N N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N O N 26 N P N 27 N O N 28 N O N 29 N O N 30 N C N 31 R C N 32 N O N 33 S C N 34 N O N 35 R C N 36 N O N 37 R C Y 38 N N Y 39 N C Y 40 N N Y 41 N C Y 42 N C N 43 N N Y 44 N N Y 45 N C Y 46 N N Y 47 N C N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N N N 83 N C N 84 N N N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N N N 103 S C N 104 N C N 105 N O N 106 N C N 107 N C N 108 N O N 109 N N N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N O N 136 N P N 137 N O N 138 N O N 139 N O N 140 N C N 141 R C N 142 N O N 143 S C N 144 N O N 145 R C N 146 N O N 147 R C N 148 N N N 149 N C N 150 N O N 151 N N N 152 N C N 153 N N N 154 N C N 155 N C N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 R C N 172 N C N 173 N O N 174 N C N 175 N S N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N O N 185 N P N 186 N O N 187 N O N 188 N O N 189 N C N 190 R C N 191 N O N 192 S C N 193 N O N 194 N C N 195 R C Y 196 N N Y 197 N C Y 198 N N Y 199 N C Y 200 N C N 201 N N Y 202 N N Y 203 N C Y 204 N N Y 205 N C N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N O N 221 N P N 222 N O N 223 N O N 224 N O N 225 N C N 226 R C N 227 N O N 228 S C N 229 N O N 230 N C N 231 R C N 232 N N N 233 N C N 234 N O N 235 N N N 236 N C N 237 N N N 238 N C N 239 N C N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N O N 255 N P N 256 N O N 257 N O N 258 N O N 259 N C N 260 R C N 261 N O N 262 S C N 263 N O N 264 N C N 265 R C Y 266 N N Y 267 N C Y 268 N N Y 269 N C N 270 N C N 271 N O N 272 N N N 273 N C N 274 N N N 275 N N Y 276 N C N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N O N 292 N P N 293 N O N 294 N O N 295 N O N 296 N C N 297 R C N 298 N O N 299 S C N 300 N O N 301 N C N 302 R C N 303 N N N 304 N C N 305 N O N 306 N N N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N C N 328 N C N 329 N C N 330 N C N 331 N C N 332 N C N 333 N O N 334 N O N 335 N O N 336 N O N 337 N O N 338 N O N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N O N 346 N P N 347 N O N 348 N O N 349 N O N 350 N C N 351 R C N 352 N O N 353 S C N 354 N O N 355 R C N 356 N O N 357 R C Y 358 N N Y 359 N C Y 360 N N Y 361 N C N 362 N C N 363 N O N 364 N N N 365 N C N 366 N N N 367 N N Y 368 N C N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N C N 390 N O N 391 N N N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N O N 412 N O N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 N C N 424 N C N 425 N O N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N C N 433 N O N 434 N C N 435 N O N 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N N N 447 S C N 448 N C N 449 N O N 450 N C Y 451 N C Y 452 N N Y 453 N C Y 454 N C Y 455 N N N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N O N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 S C N 475 N C N 476 N C N 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N N N 493 S C N 494 N C N 495 N O N 496 N C N 497 N C N 498 N C N 499 N C N 500 N O N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N N N 515 S C N 516 N C N 517 N O N 518 N C N 519 N C N 520 N C N 521 N C N 522 N N N 523 N O N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N N N 540 S C N 541 N C N 542 N O N 543 N C N 544 N C N 545 N S N 546 N C N 547 N O N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N NA N 560 N N N 561 S C N 562 N C N 563 N O N 564 N C Y 565 N C Y 566 N C Y 567 N C Y 568 N C Y 569 N C Y 570 N C N 571 N O N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N N N 584 S C N 585 N C N 586 N O N 587 N C N 588 N C N 589 N C N 590 N O N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 598 N H N 599 N H N 600 N N N 601 S C N 602 N C N 603 N O N 604 N C N 605 N O N 606 N O N 607 N H N 608 N H N 609 N H N 610 N H N 611 N H N 612 N H N 613 N H N 614 N S N 615 N O N 616 N O N 617 N O N 618 N O N 619 N N N 620 S C N 621 N C N 622 N O N 623 R C N 624 N O N 625 N C N 626 N O N 627 N H N 628 N H N 629 N H N 630 N H N 631 N H N 632 N H N 633 N H N 634 N H N 635 N H N 636 N N N 637 S C N 638 N C N 639 N O N 640 N C Y 641 N C Y 642 N C Y 643 N C Y 644 N N Y 645 N C Y 646 N C Y 647 N C Y 648 N C Y 649 N C N 650 N O N 651 N H N 652 N H N 653 N H N 654 N H N 655 N H N 656 N H N 657 N H N 658 N H N 659 N H N 660 N H N 661 N H N 662 N H N 663 N N N 664 S C N 665 N C N 666 N O N 667 N C Y 668 N C Y 669 N C Y 670 N C Y 671 N C Y 672 N C Y 673 N C N 674 N O N 675 N O N 676 N H N 677 N H N 678 N H N 679 N H N 680 N H N 681 N H N 682 N H N 683 N H N 684 N H N 685 N H N 686 N H N 687 N O N 688 N P N 689 N O N 690 N O N 691 N O N 692 N C N 693 R C N 694 N O N 695 S C N 696 N O N 697 R C N 698 N O N 699 R C N 700 N N N 701 N C N 702 N O N 703 N N N 704 N C N 705 N O N 706 N C N 707 N C N 708 N H N 709 N H N 710 N H N 711 N H N 712 N H N 713 N H N 714 N H N 715 N H N 716 N H N 717 N H N 718 N H N 719 N H N 720 N H N 721 N N N 722 S C N 723 N C N 724 N O N 725 N C N 726 N C N 727 N C N 728 N O N 729 N H N 730 N H N 731 N H N 732 N H N 733 N H N 734 N H N 735 N H N 736 N H N 737 N H N 738 N H N 739 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing Y 48 N sing Y 49 N sing Y 50 N doub N 51 N sing Y 52 N sing Y 53 N sing Y 54 N doub N 55 N sing Y 56 N doub N 57 N sing N 58 N sing Y 59 N sing Y 60 N doub N 61 N sing Y 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing Y 204 N sing Y 205 N sing Y 206 N doub N 207 N sing Y 208 N sing Y 209 N sing Y 210 N doub N 211 N sing Y 212 N doub N 213 N sing N 214 N sing Y 215 N sing Y 216 N doub N 217 N sing Y 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N sing Y 278 N sing Y 279 N doub N 280 N sing Y 281 N sing N 282 N sing Y 283 N doub N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing Y 371 N sing Y 372 N sing Y 373 N doub N 374 N sing Y 375 N sing N 376 N sing Y 377 N doub N 378 N doub N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N doub N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing Y 457 N sing Y 458 N doub Y 459 N doub N 460 N sing Y 461 N sing N 462 N sing Y 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N doub N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N doub N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N doub N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N doub N 561 N sing N 562 N sing N 563 N sing N 564 N sing Y 565 N doub Y 566 N sing Y 567 N sing N 568 N sing Y 569 N doub N 570 N sing Y 571 N doub N 572 N sing Y 573 N sing N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N doub N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N sing N 599 N sing N 600 N doub N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N doub N 608 N doub N 609 N sing N 610 N sing N 611 N sing N 612 N sing N 613 N sing N 614 N sing N 615 N sing N 616 N sing N 617 N doub N 618 N sing N 619 N sing N 620 N sing N 621 N sing N 622 N sing N 623 N sing N 624 N sing N 625 N sing N 626 N sing N 627 N sing N 628 N sing N 629 N sing N 630 N sing N 631 N sing N 632 N sing N 633 N doub N 634 N sing N 635 N sing N 636 N sing N 637 N sing Y 638 N doub Y 639 N sing Y 640 N sing N 641 N sing Y 642 N doub Y 643 N sing Y 644 N sing N 645 N sing Y 646 N sing Y 647 N doub N 648 N sing Y 649 N doub N 650 N sing Y 651 N sing N 652 N sing N 653 N sing N 654 N sing N 655 N sing N 656 N sing N 657 N sing N 658 N sing N 659 N sing N 660 N sing N 661 N doub N 662 N sing N 663 N sing N 664 N sing N 665 N sing Y 666 N doub Y 667 N sing Y 668 N sing N 669 N sing Y 670 N doub N 671 N sing Y 672 N doub N 673 N sing Y 674 N sing N 675 N sing N 676 N sing N 677 N sing N 678 N sing N 679 N sing N 680 N sing N 681 N doub N 682 N sing N 683 N sing N 684 N sing N 685 N sing N 686 N sing N 687 N sing N 688 N sing N 689 N sing N 690 N sing N 691 N sing N 692 N sing N 693 N sing N 694 N sing N 695 N sing N 696 N sing N 697 N sing N 698 N sing N 699 N sing N 700 N sing N 701 N sing N 702 N sing N 703 N sing N 704 N sing N 705 N doub N 706 N sing N 707 N sing N 708 N sing N 709 N doub N 710 N sing N 711 N doub N 712 N sing N 713 N sing N 714 N sing N 715 N sing N 716 N sing N 717 N sing N 718 N sing N 719 N sing N 720 N doub N 721 N sing N 722 N sing N 723 N sing N 724 N sing N 725 N sing N 726 N sing N 727 N sing N 728 N sing N 729 N sing N 730 N sing N 731 N sing US Mol.Cell MOCEFL 2168 1097-2765 28 264 276 10.1016/j.molcel.2007.08.015 17964265 Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription 2007 10.2210/pdb2qk9/pdb pdb_00002qk9 100 1 CCD MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0 22-ID APS SYNCHROTRON APS BEAMLINE 22-ID 5708.443 5'-R(*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' 1 syn polymer 5556.603 5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*T)-3' 1 syn polymer 17104.279 Ribonuclease H1 3.1.26.4 C-terminal domain (residues 134-286) D210N 1 man polymer 96.063 SULFATE ION 7 syn non-polymer 116.205 HEXANE-1,6-DIAMINE 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 189.100 CITRATE ANION 1 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 18.015 water 109 nat water Hs-RNase HC; RNase H1; Ribonuclease H type II E.C.3.1.26.4 no no AGUGCGACACCUGAUUCC AGUGCGACACCUGAUUCC B polyribonucleotide no no (DG)(DG)(DA)(DA)(DT)(DC)(DA)(DG)(DG)(DT)(DG)(DT)(DC)(DG)(DC)(DA)(DC)(DT) GGAATCAGGTGTCGCACT C polydeoxyribonucleotide no no GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSM FTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSM FTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample RNASEH1, RNH1 9606 Homo sapiens 511693 Escherichia coli BL21 BL21 plasmid pET15 1 VAPOR DIFFUSION, HANGING DROP 5.6 1.5 M ammonium sulfate, 0.1 M Na citrate (pH 5.6) 20mM ATP or 3% 1,6-diaminohexane, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 (NH4)2SO4 1 sodium citrate 1 1,6-diaminohexane 1 (NH4)2SO4 2 sodium citrate 2 1,6-diaminohexane 2 -4.958 1 20 B 1 C 36 -2.306 B_A1:DT36_C 1 -14.446 -0.201 0.300 -0.360 -12.729 1 19 B 2 C 35 4.378 B_G2:DC35_C 2 -18.242 -0.348 0.241 -0.256 -18.963 1 20 B 3 C 34 -4.647 B_U3:DA34_C 3 -10.637 -0.293 0.491 -0.118 -13.884 1 19 B 4 C 33 -2.833 B_G4:DC33_C 4 -11.043 -0.014 -0.139 -0.274 -17.228 1 19 B 5 C 32 -0.472 B_C5:DG32_C 5 -11.571 0.146 0.225 -0.183 -20.973 1 19 B 6 C 31 0.330 B_G6:DC31_C 6 -17.510 -0.149 -0.267 -0.231 -14.226 1 20 B 7 C 30 -0.156 B_A7:DT30_C 7 -5.841 0.241 0.026 -0.155 2.019 1 19 B 8 C 29 -1.658 B_C8:DG29_C 8 -14.946 -0.174 -0.284 -0.220 -11.733 1 20 B 9 C 28 -2.480 B_A9:DT28_C 9 -5.509 0.054 -0.246 -0.142 -0.335 1 19 B 10 C 27 -1.322 B_C10:DG27_C 10 -8.306 0.254 0.243 -0.099 3.742 1 19 B 11 C 26 1.036 B_C11:DG26_C 11 -11.188 -0.202 0.080 -0.214 -3.725 1 20 B 12 C 25 3.021 B_U12:DA25_C 12 -9.690 -0.433 0.223 -0.134 1.434 1 19 B 13 C 24 0.737 B_G13:DC24_C 13 -4.145 -0.073 0.107 -0.250 1.801 1 20 B 14 C 23 2.493 B_A14:DT23_C 14 -12.825 -0.251 -0.096 -0.156 5.699 1 20 B 15 C 22 -1.493 B_U15:DA22_C 15 -7.057 0.040 -0.001 0.038 10.173 1 20 B 16 C 21 0.154 B_U16:DA21_C 16 -1.691 0.171 -0.128 -0.072 9.293 1 19 B 17 C 20 2.246 B_C17:DG20_C 17 -11.740 0.073 -0.328 -0.244 5.336 1 19 B 18 C 19 -0.432 B_C18:DG19_C 18 0.999 0.096 -0.398 -0.236 3.290 38.584 B B 1 2 3.505 C C 36 35 3.336 2.315 -0.057 -0.701 BB_A1G2:DC35DT36_CC 1 -0.713 1.079 38.511 -1.350 -0.002 3.288 35.014 B B 2 3 4.796 C C 35 34 3.369 2.882 0.215 -0.949 BB_G2U3:DA34DC35_CC 2 1.119 -1.863 34.881 -2.019 -0.186 2.753 34.740 B B 3 4 18.246 C C 34 33 3.174 10.691 0.627 -1.101 BB_U3G4:DC33DA34_CC 3 4.897 -8.358 32.747 -3.373 -0.350 3.263 31.799 B B 4 5 4.419 C C 33 32 3.369 2.418 0.359 -1.508 BB_G4C5:DG32DC33_CC 4 1.918 -3.505 31.653 -3.202 -0.299 3.001 35.649 B B 5 6 17.955 C C 32 31 3.488 10.795 0.433 -1.217 BB_C5G6:DC31DG32_CC 5 4.981 -8.286 33.669 -3.589 0.031 3.071 32.634 B B 6 7 8.411 C C 31 30 3.198 4.708 0.378 -0.800 BB_G6A7:DT30DC31_CC 6 1.927 -3.442 32.245 -2.211 -0.350 2.256 23.664 B B 7 8 31.651 C C 30 29 3.090 12.336 -0.722 -0.613 BB_A7C8:DG29DT30_CC 7 2.045 -5.248 20.130 -5.125 2.362 3.338 31.357 B B 8 9 11.749 C C 29 28 3.670 6.299 0.718 -1.589 BB_C8A9:DT28DG29_CC 8 3.030 -5.652 30.587 -4.226 -0.709 3.109 34.563 B B 9 10 -3.909 C C 28 27 3.055 -2.317 0.272 -1.515 BB_A9C10:DG27DT28_CC 9 -3.269 5.514 34.337 -2.212 -0.935 2.688 23.866 B B 10 11 11.020 C C 27 26 3.083 4.497 1.002 -2.593 BB_C10C11:DG26DG27_CC 10 5.047 -12.369 22.902 -7.594 -0.937 3.073 32.870 B B 11 12 12.688 C C 26 25 3.401 7.120 -0.482 -1.308 BB_C11U12:DA25DG26_CC 11 -2.253 4.015 32.033 -3.533 0.466 2.671 35.391 B B 12 13 12.395 C C 25 24 3.025 7.482 0.124 -1.415 BB_U12G13:DC24DA25_CC 12 -0.104 0.172 34.615 -3.297 -0.218 2.850 31.011 B B 13 14 13.798 C C 24 23 3.276 7.309 0.142 -1.480 BB_G13A14:DT23DC24_CC 13 1.198 -2.262 30.135 -4.106 -0.046 3.030 34.198 B B 14 15 6.661 C C 23 22 3.234 3.908 -0.147 -1.689 BB_A14U15:DA22DT23_CC 14 -1.756 2.994 33.937 -3.466 -0.016 2.508 26.421 B B 15 16 16.137 C C 22 21 3.154 7.282 -0.799 -2.042 BB_U15U16:DA21DA22_CC 15 -0.918 2.034 25.399 -6.179 1.533 2.553 36.828 B B 16 17 19.750 C C 21 20 3.120 12.239 1.232 -1.539 BB_U16C17:DG20DA21_CC 16 3.307 -5.337 34.648 -3.925 -1.547 3.182 33.092 B B 17 18 7.231 C C 20 19 3.486 4.107 -0.244 -2.185 BB_C17C18:DG19DG20_CC 17 1.579 -2.779 32.807 -4.546 0.701 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Non-polymer description Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2007-11-13 1 1 2011-07-13 1 2 2021-10-20 1 3 2024-02-21 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id N RCSB Y RCSB 2007-07-10 REL REL SO4 SULFATE ION 16D HEXANE-1,6-DIAMINE NA SODIUM ION FLC CITRATE ANION GOL GLYCEROL HOH water Original low resolution strcture solved with the same crystal and SeMet SIRAS Other experimental model SO4 1007 4 SO4 SO4 1007 B SO4 1008 4 SO4 SO4 1008 B SO4 1009 4 SO4 SO4 1009 C 16D 1004 5 16D 16D 1004 C NA 9001 6 NA NA 9001 A FLC 1001 7 FLC FLC 1001 A SO4 1005 4 SO4 SO4 1005 A SO4 1006 4 SO4 SO4 1006 A SO4 1010 4 SO4 SO4 1010 A SO4 1011 4 SO4 SO4 1011 A GOL 1002 8 GOL GOL 1002 A GOL 1003 8 GOL GOL 1003 A HOH 1009 9 HOH HOH 1009 B HOH 1010 9 HOH HOH 1010 B HOH 1011 9 HOH HOH 1011 B HOH 1012 9 HOH HOH 1012 B HOH 1013 9 HOH HOH 1013 B HOH 1014 9 HOH HOH 1014 B HOH 1015 9 HOH HOH 1015 B HOH 1016 9 HOH HOH 1016 B HOH 1017 9 HOH HOH 1017 B HOH 1018 9 HOH HOH 1018 B HOH 1019 9 HOH HOH 1019 B HOH 1020 9 HOH HOH 1020 B HOH 1021 9 HOH HOH 1021 B HOH 1022 9 HOH HOH 1022 B HOH 1023 9 HOH HOH 1023 B HOH 1024 9 HOH HOH 1024 B HOH 1025 9 HOH HOH 1025 B HOH 1026 9 HOH HOH 1026 B HOH 1027 9 HOH HOH 1027 B HOH 1028 9 HOH HOH 1028 B HOH 1029 9 HOH HOH 1029 B HOH 1030 9 HOH HOH 1030 B HOH 1010 9 HOH HOH 1010 C HOH 1011 9 HOH HOH 1011 C HOH 1012 9 HOH HOH 1012 C HOH 1013 9 HOH HOH 1013 C HOH 1014 9 HOH HOH 1014 C HOH 1015 9 HOH HOH 1015 C HOH 1016 9 HOH HOH 1016 C HOH 1017 9 HOH HOH 1017 C HOH 1018 9 HOH HOH 1018 C HOH 1019 9 HOH HOH 1019 C HOH 1020 9 HOH HOH 1020 C HOH 1021 9 HOH HOH 1021 C HOH 1022 9 HOH HOH 1022 C HOH 1023 9 HOH HOH 1023 C HOH 1024 9 HOH HOH 1024 C HOH 1025 9 HOH HOH 1025 C HOH 1026 9 HOH HOH 1026 C HOH 1027 9 HOH HOH 1027 C HOH 1028 9 HOH HOH 1028 C HOH 1029 9 HOH HOH 1029 C HOH 1030 9 HOH HOH 1030 C HOH 1031 9 HOH HOH 1031 C HOH 1032 9 HOH HOH 1032 C HOH 1033 9 HOH HOH 1033 C HOH 1034 9 HOH HOH 1034 C HOH 1035 9 HOH HOH 1035 C HOH 1 9 HOH HOH 9002 A HOH 2 9 HOH HOH 9003 A HOH 3 9 HOH HOH 9004 A HOH 4 9 HOH HOH 9005 A HOH 5 9 HOH HOH 9006 A HOH 6 9 HOH HOH 9007 A HOH 7 9 HOH HOH 9008 A HOH 8 9 HOH HOH 9009 A HOH 9 9 HOH HOH 9010 A HOH 11 9 HOH HOH 9011 A HOH 12 9 HOH HOH 9012 A HOH 14 9 HOH HOH 9013 A HOH 15 9 HOH HOH 9014 A HOH 16 9 HOH HOH 9015 A HOH 18 9 HOH HOH 9016 A HOH 19 9 HOH HOH 9017 A HOH 20 9 HOH HOH 9018 A HOH 21 9 HOH HOH 9019 A HOH 22 9 HOH HOH 9020 A HOH 23 9 HOH HOH 9021 A HOH 27 9 HOH HOH 9022 A HOH 28 9 HOH HOH 9023 A HOH 32 9 HOH HOH 9024 A HOH 33 9 HOH HOH 9025 A HOH 36 9 HOH HOH 9026 A HOH 38 9 HOH HOH 9027 A HOH 40 9 HOH HOH 9028 A HOH 41 9 HOH HOH 9029 A HOH 43 9 HOH HOH 9030 A HOH 46 9 HOH HOH 9031 A HOH 47 9 HOH HOH 9032 A HOH 49 9 HOH HOH 9033 A HOH 50 9 HOH HOH 9034 A HOH 53 9 HOH HOH 9035 A HOH 54 9 HOH HOH 9036 A HOH 55 9 HOH HOH 9037 A HOH 58 9 HOH HOH 9038 A HOH 60 9 HOH HOH 9039 A HOH 61 9 HOH HOH 9040 A HOH 64 9 HOH HOH 9041 A HOH 65 9 HOH HOH 9042 A HOH 66 9 HOH HOH 9043 A HOH 69 9 HOH HOH 9044 A HOH 70 9 HOH HOH 9045 A HOH 71 9 HOH HOH 9046 A HOH 72 9 HOH HOH 9047 A HOH 80 9 HOH HOH 9048 A HOH 81 9 HOH HOH 9049 A HOH 83 9 HOH HOH 9050 A HOH 85 9 HOH HOH 9051 A HOH 88 9 HOH HOH 9052 A HOH 90 9 HOH HOH 9053 A HOH 91 9 HOH HOH 9054 A HOH 93 9 HOH HOH 9055 A HOH 100 9 HOH HOH 9056 A HOH 104 9 HOH HOH 9057 A HOH 105 9 HOH HOH 9058 A HOH 106 9 HOH HOH 9059 A HOH 107 9 HOH HOH 9060 A HOH 108 9 HOH HOH 9061 A HOH 109 9 HOH HOH 9062 A A 1 n 1 A 1 B G 2 n 2 G 2 B U 3 n 3 U 3 B G 4 n 4 G 4 B C 5 n 5 C 5 B G 6 n 6 G 6 B A 7 n 7 A 7 B C 8 n 8 C 8 B A 9 n 9 A 9 B C 10 n 10 C 10 B C 11 n 11 C 11 B U 12 n 12 U 12 B G 13 n 13 G 13 B A 14 n 14 A 14 B U 15 n 15 U 15 B U 16 n 16 U 16 B C 17 n 17 C 17 B C 18 n 18 C 18 B DG 19 n 1 DG 19 C DG 20 n 2 DG 20 C DA 21 n 3 DA 21 C DA 22 n 4 DA 22 C DT 23 n 5 DT 23 C DC 24 n 6 DC 24 C DA 25 n 7 DA 25 C DG 26 n 8 DG 26 C DG 27 n 9 DG 27 C DT 28 n 10 DT 28 C DG 29 n 11 DG 29 C DT 30 n 12 DT 30 C DC 31 n 13 DC 31 C DG 32 n 14 DG 32 C DC 33 n 15 DC 33 C DA 34 n 16 DA 34 C DC 35 n 17 DC 35 C DT 36 n 18 DT 36 C n 1 133 A SER 134 n 2 SER 134 A HIS 135 n 3 HIS 135 A MET 136 n 4 MET 136 A GLY 137 n 5 GLY 137 A ASP 138 n 6 ASP 138 A PHE 139 n 7 PHE 139 A VAL 140 n 8 VAL 140 A VAL 141 n 9 VAL 141 A VAL 142 n 10 VAL 142 A TYR 143 n 11 TYR 143 A THR 144 n 12 THR 144 A ASP 145 n 13 ASP 145 A GLY 146 n 14 GLY 146 A CYS 147 n 15 CYS 147 A CYS 148 n 16 CYS 148 A SER 149 n 17 SER 149 A SER 150 n 18 SER 150 A ASN 151 n 19 ASN 151 A GLY 152 n 20 GLY 152 A ARG 153 n 21 ARG 153 A ARG 154 n 22 ARG 154 A ARG 155 n 23 ARG 155 A PRO 156 n 24 PRO 156 A ARG 157 n 25 ARG 157 A ALA 158 n 26 ALA 158 A GLY 159 n 27 GLY 159 A ILE 160 n 28 ILE 160 A GLY 161 n 29 GLY 161 A VAL 162 n 30 VAL 162 A TYR 163 n 31 TYR 163 A TRP 164 n 32 TRP 164 A GLY 165 n 33 GLY 165 A PRO 166 n 34 PRO 166 A GLY 167 n 35 GLY 167 A HIS 168 n 36 HIS 168 A PRO 169 n 37 PRO 169 A LEU 170 n 38 LEU 170 A ASN 171 n 39 ASN 171 A VAL 172 n 40 VAL 172 A GLY 173 n 41 GLY 173 A ILE 174 n 42 ILE 174 A ARG 175 n 43 ARG 175 A LEU 176 n 44 LEU 176 A PRO 177 n 45 PRO 177 A GLY 178 n 46 GLY 178 A ARG 179 n 47 ARG 179 A GLN 180 n 48 GLN 180 A THR 181 n 49 THR 181 A ASN 182 n 50 ASN 182 A GLN 183 n 51 GLN 183 A ARG 184 n 52 ARG 184 A ALA 185 n 53 ALA 185 A GLU 186 n 54 GLU 186 A ILE 187 n 55 ILE 187 A HIS 188 n 56 HIS 188 A ALA 189 n 57 ALA 189 A ALA 190 n 58 ALA 190 A CYS 191 n 59 CYS 191 A LYS 192 n 60 LYS 192 A ALA 193 n 61 ALA 193 A ILE 194 n 62 ILE 194 A GLU 195 n 63 GLU 195 A GLN 196 n 64 GLN 196 A ALA 197 n 65 ALA 197 A LYS 198 n 66 LYS 198 A THR 199 n 67 THR 199 A GLN 200 n 68 GLN 200 A ASN 201 n 69 ASN 201 A ILE 202 n 70 ILE 202 A ASN 203 n 71 ASN 203 A LYS 204 n 72 LYS 204 A LEU 205 n 73 LEU 205 A VAL 206 n 74 VAL 206 A LEU 207 n 75 LEU 207 A TYR 208 n 76 TYR 208 A THR 209 n 77 THR 209 A ASP 210 n 78 ASN 210 A SER 211 n 79 SER 211 A MET 212 n 80 MET 212 A PHE 213 n 81 PHE 213 A THR 214 n 82 THR 214 A ILE 215 n 83 ILE 215 A ASN 216 n 84 ASN 216 A GLY 217 n 85 GLY 217 A ILE 218 n 86 ILE 218 A THR 219 n 87 THR 219 A ASN 220 n 88 ASN 220 A TRP 221 n 89 TRP 221 A VAL 222 n 90 VAL 222 A GLN 223 n 91 GLN 223 A GLY 224 n 92 GLY 224 A TRP 225 n 93 TRP 225 A LYS 226 n 94 LYS 226 A LYS 227 n 95 LYS 227 A ASN 228 n 96 ASN 228 A GLY 229 n 97 GLY 229 A TRP 230 n 98 TRP 230 A LYS 231 n 99 LYS 231 A THR 232 n 100 THR 232 A SER 233 n 101 SER 233 A ALA 234 n 102 ALA 234 A GLY 235 n 103 GLY 235 A LYS 236 n 104 LYS 236 A GLU 237 n 105 GLU 237 A VAL 238 n 106 VAL 238 A ILE 239 n 107 ILE 239 A ASN 240 n 108 ASN 240 A LYS 241 n 109 LYS 241 A GLU 242 n 110 GLU 242 A ASP 243 n 111 ASP 243 A PHE 244 n 112 PHE 244 A VAL 245 n 113 VAL 245 A ALA 246 n 114 ALA 246 A LEU 247 n 115 LEU 247 A GLU 248 n 116 GLU 248 A ARG 249 n 117 ARG 249 A LEU 250 n 118 LEU 250 A THR 251 n 119 THR 251 A GLN 252 n 120 GLN 252 A GLY 253 n 121 GLY 253 A MET 254 n 122 MET 254 A ASP 255 n 123 ASP 255 A ILE 256 n 124 ILE 256 A GLN 257 n 125 GLN 257 A TRP 258 n 126 TRP 258 A MET 259 n 127 MET 259 A HIS 260 n 128 HIS 260 A VAL 261 n 129 VAL 261 A PRO 262 n 130 PRO 262 A GLY 263 n 131 GLY 263 A HIS 264 n 132 HIS 264 A SER 265 n 133 SER 265 A GLY 266 n 134 GLY 266 A PHE 267 n 135 PHE 267 A ILE 268 n 136 ILE 268 A GLY 269 n 137 GLY 269 A ASN 270 n 138 ASN 270 A GLU 271 n 139 GLU 271 A GLU 272 n 140 GLU 272 A ALA 273 n 141 ALA 273 A ASP 274 n 142 ASP 274 A ARG 275 n 143 ARG 275 A LEU 276 n 144 LEU 276 A ALA 277 n 145 ALA 277 A ARG 278 n 146 ARG 278 A GLU 279 n 147 GLU 279 A GLY 280 n 148 GLY 280 A ALA 281 n 149 ALA 281 A LYS 282 n 150 LYS 282 A GLN 283 n 151 GLN 283 A SER 284 n 152 SER 284 A GLU 285 n 153 GLU 285 A ASP 286 n 154 ASP 286 A author_defined_assembly 3 trimeric B A 9 A O3' A 9 1_555 A NA 9001 H NA NA 1_555 B C 10 A OP1 C 10 1_555 54.2 B A 9 A O3' A 9 1_555 A NA 9001 H NA NA 1_555 A ASP 145 C OD2 ASP 13 1_555 139.1 B C 10 A OP1 C 10 1_555 A NA 9001 H NA NA 1_555 A ASP 145 C OD2 ASP 13 1_555 85.5 B A 9 A O3' A 9 1_555 A NA 9001 H NA NA 1_555 A GLU 186 C OE1 GLU 54 1_555 125.7 B C 10 A OP1 C 10 1_555 A NA 9001 H NA NA 1_555 A GLU 186 C OE1 GLU 54 1_555 145.8 A ASP 145 C OD2 ASP 13 1_555 A NA 9001 H NA NA 1_555 A GLU 186 C OE1 GLU 54 1_555 82.4 B A 9 A O3' A 9 1_555 A NA 9001 H NA NA 1_555 A GLU 186 C OE2 GLU 54 1_555 79.0 B C 10 A OP1 C 10 1_555 A NA 9001 H NA NA 1_555 A GLU 186 C OE2 GLU 54 1_555 117.3 A ASP 145 C OD2 ASP 13 1_555 A NA 9001 H NA NA 1_555 A GLU 186 C OE2 GLU 54 1_555 120.2 A GLU 186 C OE1 GLU 54 1_555 A NA 9001 H NA NA 1_555 A GLU 186 C OE2 GLU 54 1_555 46.8 B A 9 A O3' A 9 1_555 A NA 9001 H NA NA 1_555 A ASN 210 C ND2 ASN 78 1_555 94.0 B C 10 A OP1 C 10 1_555 A NA 9001 H NA NA 1_555 A ASN 210 C ND2 ASN 78 1_555 84.9 A ASP 145 C OD2 ASP 13 1_555 A NA 9001 H NA NA 1_555 A ASN 210 C ND2 ASN 78 1_555 88.7 A GLU 186 C OE1 GLU 54 1_555 A NA 9001 H NA NA 1_555 A ASN 210 C ND2 ASN 78 1_555 126.5 A GLU 186 C OE2 GLU 54 1_555 A NA 9001 H NA NA 1_555 A ASN 210 C ND2 ASN 78 1_555 143.1 B A 9 A O3' A 9 1_555 A NA 9001 H NA NA 1_555 A HOH 9037 R O HOH 1_555 138.1 B C 10 A OP1 C 10 1_555 A NA 9001 H NA NA 1_555 A HOH 9037 R O HOH 1_555 147.2 A ASP 145 C OD2 ASP 13 1_555 A NA 9001 H NA NA 1_555 A HOH 9037 R O HOH 1_555 79.5 A GLU 186 C OE1 GLU 54 1_555 A NA 9001 H NA NA 1_555 A HOH 9037 R O HOH 1_555 60.6 A GLU 186 C OE2 GLU 54 1_555 A NA 9001 H NA NA 1_555 A HOH 9037 R O HOH 1_555 95.4 A ASN 210 C ND2 ASN 78 1_555 A NA 9001 H NA NA 1_555 A HOH 9037 R O HOH 1_555 65.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 174 C O ILE 42 A N ILE 160 C N ILE 28 A O ARG 157 C O ARG 25 A N SER 149 C N SER 17 A N VAL 142 C N VAL 10 A O TYR 208 C O TYR 76 A N LEU 207 C N LEU 75 A O MET 259 C O MET 127 1 A OG SER 134 C OG SER 2 1 Y 1 A CG HIS 135 C CG HIS 3 1 Y 1 A ND1 HIS 135 C ND1 HIS 3 1 Y 1 A CD2 HIS 135 C CD2 HIS 3 1 Y 1 A CE1 HIS 135 C CE1 HIS 3 1 Y 1 A NE2 HIS 135 C NE2 HIS 3 1 Y 1 A CG ASP 286 C CG ASP 154 1 Y 1 A OD1 ASP 286 C OD1 ASP 154 1 Y 1 A OD2 ASP 286 C OD2 ASP 154 1 Y 1 A GLY 133 C GLY 1 1 Y 1 A A OA1 O FLC HOH 1001 9021 2.06 1 -7.78 0.90 105.70 97.92 C C C O5' P OP1 DG DG DG 29 29 29 N 1 -12.60 1.90 109.30 96.70 C C C C5' C4' O4' DG DG DG 29 29 29 N 1 A HIS 135 13.99 -89.57 1 A MET 136 88.18 103.74 1 A ASN 220 -164.17 -69.17 1 A ASN 228 -143.95 19.66 43.3 The last round of refinement in CNS was carried out with the pucker restraints for the DNA strand removed 0.216 0.19 2.55 30 2085 22505 21164 94 Random 1 MOLECULAR REPLACEMENT Original low resolution strcture solved with the same crystal and SeMet SIRAS Engh & Huber 2.55 30 109 2112 69 746 1188 0.013483 1.86942 1.418 1.5 2.437 2.0 1.904 2.0 2.908 2.5 2.55 30 2QK9 22505 21164 0.074 1 38.7 94 0.456 2.55 2.64 4.1 1 refinement CNS 1.1 data reduction HKL-2000 data scaling HKL-2000 N Human RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybrid 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N 6 N N 7 N N 4 N N 4 N N 4 N N 4 N N 8 N N 8 N N 9 N N 9 N N 9 N N A THR 181 C THR 49 HELX_P A GLN 200 C GLN 68 1 1 20 A SER 211 C SER 79 HELX_P A ASN 220 C ASN 88 1 2 10 A ASN 220 C ASN 88 HELX_P A LYS 227 C LYS 95 1 3 8 A ASN 240 C ASN 108 HELX_P A GLN 252 C GLN 120 1 4 13 A PHE 267 C PHE 135 HELX_P A ALA 281 C ALA 149 1 5 15 metalc 2.858 B A 9 A O3' A 9 1_555 A NA 9001 H NA NA 1_555 metalc 2.475 B C 10 A OP1 C 10 1_555 A NA 9001 H NA NA 1_555 metalc 2.376 A ASP 145 C OD2 ASP 13 1_555 A NA 9001 H NA NA 1_555 metalc 2.931 A GLU 186 C OE1 GLU 54 1_555 A NA 9001 H NA NA 1_555 metalc 2.535 A GLU 186 C OE2 GLU 54 1_555 A NA 9001 H NA NA 1_555 metalc 2.554 A ASN 210 C ND2 ASN 78 1_555 A NA 9001 H NA NA 1_555 metalc 2.878 A NA 9001 H NA NA 1_555 A HOH 9037 R O HOH 1_555 hydrog WATSON-CRICK B A 1 A N1 A 1 1_555 C DT 36 B N3 DT 18 1_555 hydrog WATSON-CRICK B A 1 A N6 A 1 1_555 C DT 36 B O4 DT 18 1_555 hydrog WATSON-CRICK B G 2 A N1 G 2 1_555 C DC 35 B N3 DC 17 1_555 hydrog WATSON-CRICK B G 2 A N2 G 2 1_555 C DC 35 B O2 DC 17 1_555 hydrog WATSON-CRICK B G 2 A O6 G 2 1_555 C DC 35 B N4 DC 17 1_555 hydrog WATSON-CRICK B U 3 A N3 U 3 1_555 C DA 34 B N1 DA 16 1_555 hydrog WATSON-CRICK B U 3 A O4 U 3 1_555 C DA 34 B N6 DA 16 1_555 hydrog WATSON-CRICK B G 4 A N1 G 4 1_555 C DC 33 B N3 DC 15 1_555 hydrog WATSON-CRICK B G 4 A N2 G 4 1_555 C DC 33 B O2 DC 15 1_555 hydrog WATSON-CRICK B G 4 A O6 G 4 1_555 C DC 33 B N4 DC 15 1_555 hydrog WATSON-CRICK B C 5 A N3 C 5 1_555 C DG 32 B N1 DG 14 1_555 hydrog WATSON-CRICK B C 5 A N4 C 5 1_555 C DG 32 B O6 DG 14 1_555 hydrog WATSON-CRICK B C 5 A O2 C 5 1_555 C DG 32 B N2 DG 14 1_555 hydrog WATSON-CRICK B G 6 A N1 G 6 1_555 C DC 31 B N3 DC 13 1_555 hydrog WATSON-CRICK B G 6 A N2 G 6 1_555 C DC 31 B O2 DC 13 1_555 hydrog WATSON-CRICK B G 6 A O6 G 6 1_555 C DC 31 B N4 DC 13 1_555 hydrog WATSON-CRICK B A 7 A N1 A 7 1_555 C DT 30 B N3 DT 12 1_555 hydrog WATSON-CRICK B A 7 A N6 A 7 1_555 C DT 30 B O4 DT 12 1_555 hydrog WATSON-CRICK B C 8 A N3 C 8 1_555 C DG 29 B N1 DG 11 1_555 hydrog WATSON-CRICK B C 8 A N4 C 8 1_555 C DG 29 B O6 DG 11 1_555 hydrog WATSON-CRICK B C 8 A O2 C 8 1_555 C DG 29 B N2 DG 11 1_555 hydrog WATSON-CRICK B A 9 A N1 A 9 1_555 C DT 28 B N3 DT 10 1_555 hydrog WATSON-CRICK B A 9 A N6 A 9 1_555 C DT 28 B O4 DT 10 1_555 hydrog WATSON-CRICK B C 10 A N3 C 10 1_555 C DG 27 B N1 DG 9 1_555 hydrog WATSON-CRICK B C 10 A N4 C 10 1_555 C DG 27 B O6 DG 9 1_555 hydrog WATSON-CRICK B C 10 A O2 C 10 1_555 C DG 27 B N2 DG 9 1_555 hydrog WATSON-CRICK B C 11 A N3 C 11 1_555 C DG 26 B N1 DG 8 1_555 hydrog WATSON-CRICK B C 11 A N4 C 11 1_555 C DG 26 B O6 DG 8 1_555 hydrog WATSON-CRICK B C 11 A O2 C 11 1_555 C DG 26 B N2 DG 8 1_555 hydrog WATSON-CRICK B U 12 A N3 U 12 1_555 C DA 25 B N1 DA 7 1_555 hydrog WATSON-CRICK B U 12 A O4 U 12 1_555 C DA 25 B N6 DA 7 1_555 hydrog WATSON-CRICK B G 13 A N1 G 13 1_555 C DC 24 B N3 DC 6 1_555 hydrog WATSON-CRICK B G 13 A N2 G 13 1_555 C DC 24 B O2 DC 6 1_555 hydrog WATSON-CRICK B G 13 A O6 G 13 1_555 C DC 24 B N4 DC 6 1_555 hydrog WATSON-CRICK B A 14 A N1 A 14 1_555 C DT 23 B N3 DT 5 1_555 hydrog WATSON-CRICK B A 14 A N6 A 14 1_555 C DT 23 B O4 DT 5 1_555 hydrog WATSON-CRICK B U 15 A N3 U 15 1_555 C DA 22 B N1 DA 4 1_555 hydrog WATSON-CRICK B U 15 A O4 U 15 1_555 C DA 22 B N6 DA 4 1_555 hydrog WATSON-CRICK B U 16 A N3 U 16 1_555 C DA 21 B N1 DA 3 1_555 hydrog WATSON-CRICK B U 16 A O4 U 16 1_555 C DA 21 B N6 DA 3 1_555 hydrog WATSON-CRICK B C 17 A N3 C 17 1_555 C DG 20 B N1 DG 2 1_555 hydrog WATSON-CRICK B C 17 A N4 C 17 1_555 C DG 20 B O6 DG 2 1_555 hydrog WATSON-CRICK B C 17 A O2 C 17 1_555 C DG 20 B N2 DG 2 1_555 hydrog WATSON-CRICK B C 18 A N3 C 18 1_555 C DG 19 B N1 DG 1 1_555 hydrog WATSON-CRICK B C 18 A N4 C 18 1_555 C DG 19 B O6 DG 1 1_555 hydrog WATSON-CRICK B C 18 A O2 C 18 1_555 C DG 19 B N2 DG 1 1_555 HYDROLASE/DNA/RNA RNase H; RNA/DNA hybrid, HYDROLASE-DNA-RNA COMPLEX RNH1_HUMAN UNP 3 136 O60930 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTI NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9 PDB 1 2QK9 2QK9 PDB 2 2QK9 136 286 2QK9 136 286 O60930 A 1 4 154 1 18 2QK9 1 18 2QK9 B 2 1 18 19 36 2QK9 19 36 2QK9 C 3 1 18 1 expression tag GLY 133 2QK9 A O60930 UNP 1 1 expression tag SER 134 2QK9 A O60930 UNP 2 1 expression tag HIS 135 2QK9 A O60930 UNP 3 1 ASP engineered mutation ASN 210 2QK9 A O60930 UNP 210 78 5 anti-parallel anti-parallel parallel parallel A VAL 172 C VAL 40 A ARG 175 C ARG 43 A ARG 157 C ARG 25 A TYR 163 C TYR 31 A VAL 140 C VAL 8 A SER 149 C SER 17 A LYS 204 C LYS 72 A THR 209 C THR 77 A ASP 255 C ASP 123 A HIS 260 C HIS 128 BINDING SITE FOR RESIDUE SO4 B 1007 B SO4 1007 Software 3 BINDING SITE FOR RESIDUE SO4 B 1008 B SO4 1008 Software 3 BINDING SITE FOR RESIDUE SO4 C 1009 C SO4 1009 Software 2 BINDING SITE FOR RESIDUE NA A 9001 A NA 9001 Software 6 BINDING SITE FOR RESIDUE FLC A 1001 A FLC 1001 Software 13 BINDING SITE FOR RESIDUE SO4 A 1005 A SO4 1005 Software 4 BINDING SITE FOR RESIDUE SO4 A 1006 A SO4 1006 Software 4 BINDING SITE FOR RESIDUE SO4 A 1010 A SO4 1010 Software 3 BINDING SITE FOR RESIDUE SO4 A 1011 A SO4 1011 Software 3 BINDING SITE FOR RESIDUE 16D C 1004 C 16D 1004 Software 7 BINDING SITE FOR RESIDUE GOL A 1002 A GOL 1002 Software 6 BINDING SITE FOR RESIDUE GOL A 1003 A GOL 1003 Software 3 B C 8 A C 8 3 1_555 B A 9 A A 9 3 1_555 C 16D 1004 G 16D 3 1_555 B G 13 A G 13 3 1_555 B A 14 A A 14 3 1_555 C DA 25 B DA 7 3 1_555 C DT 30 B DT 12 2 1_555 C DC 31 B DC 13 2 1_555 A ASP 145 C ASP 13 6 1_555 A GLU 186 C GLU 54 6 1_555 A ASN 210 C ASN 78 6 1_555 A HOH 9037 R HOH 6 1_555 B A 9 A A 9 6 1_555 B C 10 A C 10 6 1_555 A VAL 140 C VAL 8 13 3_565 A TRP 164 C TRP 32 13 3_565 A HIS 168 C HIS 36 13 3_565 A GLY 173 C GLY 41 13 1_555 A GLN 200 C GLN 68 13 3_565 A ILE 202 C ILE 70 13 3_565 A GLN 283 C GLN 151 13 1_555 A HOH 9014 R HOH 13 1_555 A HOH 9018 R HOH 13 1_555 A HOH 9021 R HOH 13 1_555 A HOH 9038 R HOH 13 1_555 A HOH 9041 R HOH 13 1_555 A HOH 9045 R HOH 13 1_555 A ARG 157 C ARG 25 4 1_555 A ARG 175 C ARG 43 4 1_555 A SER 284 C SER 152 4 1_555 A GLU 285 C GLU 153 4 1_555 A HIS 264 C HIS 132 4 1_555 A HOH 9054 R HOH 4 1_555 B C 10 A C 10 4 1_555 B C 11 A C 11 4 1_555 A ARG 153 C ARG 21 3 1_555 C DG 26 B DG 8 3 1_555 C DG 27 B DG 9 3 1_555 A ARG 153 C ARG 21 3 1_555 A ARG 154 C ARG 22 3 1_555 A HOH 9058 R HOH 3 1_555 B A 7 A A 7 7 1_555 B SO4 1007 D SO4 7 1_555 B HOH 1027 P HOH 7 1_555 C DT 28 B DT 10 7 1_555 C DG 29 B DG 11 7 1_555 C DT 30 B DT 12 7 1_555 C HOH 1033 Q HOH 7 1_555 A ARG 179 C ARG 47 6 1_555 A ARG 184 C ARG 52 6 1_555 A ILE 239 C ILE 107 6 1_555 A ASN 240 C ASN 108 6 1_555 A GLU 242 C GLU 110 6 1_555 A ASP 243 C ASP 111 6 1_555 A HIS 188 C HIS 56 3 1_555 A CYS 191 C CYS 59 3 1_555 A GLU 195 C GLU 63 3 1_555 155 H 3 2