1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hsu, S.-T.D. Varnai, P. Bugaut, A. Reszka, A.P. Neidle, S. Balasubramanian, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking K 1 39.098 POTASSIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N K N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 131 13399 13409 10.1021/ja904007p 19705869 A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics 2009 US Biochemistry BICHAW 0033 0006-2960 45 7854 7860 10.1021/bi0601510 16784237 A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene 2006 10.2210/pdb2kqh/pdb pdb_00002kqh 6651.258 5'-D(*CP*GP*GP*GP*CP*GP*GP*GP*CP*GP*CP*GP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3' 1 syn polymer 39.098 POTASSIUM ION 2 syn non-polymer no no (DC)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DC)(DG)(DC)(DG)(DA)(DG)(DG)(DG)(DA)(DG)(DG)(DG) (DT) CGGGCGGGCGCGAGGGAGGGT A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n chem_comp_atom chem_comp_bond database_2 pdbx_nmr_software pdbx_nmr_spectrometer struct_conn struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2009-11-24 1 1 2011-07-13 1 2 2024-05-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 2009-11-24 SPRSDE BMRB Y PDBJ 2009-11-05 REL REL K POTASSIUM ION structures with the least restraint violations 100 10 1 2D 1H-1H NOESY 2D 1H-1H TOCSY 2D DQF-COSY 200 uM 10 mM 10 7.0 ambient 298 K Explicit water refinement including potassium ions within the G-tetrads. simulated annealing, molecular dynamics 1 lowest energy 200 micro-M DNA; 10mM potassium phosphate; 93% H2O/7% D2O 93% H2O/7% D2O Goddard chemical shift assignment Sparky Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm structure solution Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm refinement Amber 700 Bruker AVANCE Bruker Avance K 22 2 K K 22 A K 23 2 K K 23 A DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DG 6 n 6 DG 6 A DG 7 n 7 DG 7 A DG 8 n 8 DG 8 A DC 9 n 9 DC 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DA 13 n 13 DA 13 A DG 14 n 14 DG 14 A DG 15 n 15 DG 15 A DG 16 n 16 DG 16 A DA 17 n 17 DA 17 A DG 18 n 18 DG 18 A DG 19 n 19 DG 19 A DG 20 n 20 DG 20 A DT 21 n 21 DT 21 A author_defined_assembly 1 monomeric A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 A DG 3 A O6 DG 3 1_555 70.3 A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 A DG 6 A O6 DG 6 1_555 77.7 A DG 3 A O6 DG 3 1_555 A K 22 B K K 1_555 A DG 6 A O6 DG 6 1_555 87.1 A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 A DG 7 A O6 DG 7 1_555 128.1 A DG 3 A O6 DG 3 1_555 A K 22 B K K 1_555 A DG 7 A O6 DG 7 1_555 66.0 A DG 6 A O6 DG 6 1_555 A K 22 B K K 1_555 A DG 7 A O6 DG 7 1_555 73.5 A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 A DG 14 A O6 DG 14 1_555 126.3 A DG 3 A O6 DG 3 1_555 A K 22 B K K 1_555 A DG 14 A O6 DG 14 1_555 154.7 A DG 6 A O6 DG 6 1_555 A K 22 B K K 1_555 A DG 14 A O6 DG 14 1_555 79.4 A DG 7 A O6 DG 7 1_555 A K 22 B K K 1_555 A DG 14 A O6 DG 14 1_555 89.5 A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 A DG 15 A O6 DG 15 1_555 147.4 A DG 3 A O6 DG 3 1_555 A K 22 B K K 1_555 A DG 15 A O6 DG 15 1_555 99.2 A DG 6 A O6 DG 6 1_555 A K 22 B K K 1_555 A DG 15 A O6 DG 15 1_555 133.8 A DG 7 A O6 DG 7 1_555 A K 22 B K K 1_555 A DG 15 A O6 DG 15 1_555 67.9 A DG 14 A O6 DG 14 1_555 A K 22 B K K 1_555 A DG 15 A O6 DG 15 1_555 75.9 A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 A DG 18 A O6 DG 18 1_555 76.9 A DG 3 A O6 DG 3 1_555 A K 22 B K K 1_555 A DG 18 A O6 DG 18 1_555 131.3 A DG 6 A O6 DG 6 1_555 A K 22 B K K 1_555 A DG 18 A O6 DG 18 1_555 120.1 A DG 7 A O6 DG 7 1_555 A K 22 B K K 1_555 A DG 18 A O6 DG 18 1_555 154.9 A DG 14 A O6 DG 14 1_555 A K 22 B K K 1_555 A DG 18 A O6 DG 18 1_555 74.0 A DG 15 A O6 DG 15 1_555 A K 22 B K K 1_555 A DG 18 A O6 DG 18 1_555 89.5 A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 A DG 19 A O6 DG 19 1_555 80.4 A DG 3 A O6 DG 3 1_555 A K 22 B K K 1_555 A DG 19 A O6 DG 19 1_555 64.8 A DG 6 A O6 DG 6 1_555 A K 22 B K K 1_555 A DG 19 A O6 DG 19 1_555 149.0 A DG 7 A O6 DG 7 1_555 A K 22 B K K 1_555 A DG 19 A O6 DG 19 1_555 104.1 A DG 14 A O6 DG 14 1_555 A K 22 B K K 1_555 A DG 19 A O6 DG 19 1_555 131.5 A DG 15 A O6 DG 15 1_555 A K 22 B K K 1_555 A DG 19 A O6 DG 19 1_555 67.4 A DG 18 A O6 DG 18 1_555 A K 22 B K K 1_555 A DG 19 A O6 DG 19 1_555 75.1 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 A DG 4 A O6 DG 4 1_555 68.9 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 A DG 7 A O6 DG 7 1_555 63.4 A DG 4 A O6 DG 4 1_555 A K 23 C K K 1_555 A DG 7 A O6 DG 7 1_555 94.7 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 A DG 8 A O6 DG 8 1_555 119.2 A DG 4 A O6 DG 4 1_555 A K 23 C K K 1_555 A DG 8 A O6 DG 8 1_555 81.4 A DG 7 A O6 DG 7 1_555 A K 23 C K K 1_555 A DG 8 A O6 DG 8 1_555 67.9 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 A DG 15 A O6 DG 15 1_555 99.7 A DG 4 A O6 DG 4 1_555 A K 23 C K K 1_555 A DG 15 A O6 DG 15 1_555 157.7 A DG 7 A O6 DG 7 1_555 A K 23 C K K 1_555 A DG 15 A O6 DG 15 1_555 63.1 A DG 8 A O6 DG 8 1_555 A K 23 C K K 1_555 A DG 15 A O6 DG 15 1_555 88.3 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 A DG 16 A O6 DG 16 1_555 157.9 A DG 4 A O6 DG 4 1_555 A K 23 C K K 1_555 A DG 16 A O6 DG 16 1_555 127.7 A DG 7 A O6 DG 7 1_555 A K 23 C K K 1_555 A DG 16 A O6 DG 16 1_555 122.2 A DG 8 A O6 DG 8 1_555 A K 23 C K K 1_555 A DG 16 A O6 DG 16 1_555 80.5 A DG 15 A O6 DG 15 1_555 A K 23 C K K 1_555 A DG 16 A O6 DG 16 1_555 69.1 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 A DG 19 A O6 DG 19 1_555 64.3 A DG 4 A O6 DG 4 1_555 A K 23 C K K 1_555 A DG 19 A O6 DG 19 1_555 121.8 A DG 7 A O6 DG 7 1_555 A K 23 C K K 1_555 A DG 19 A O6 DG 19 1_555 93.6 A DG 8 A O6 DG 8 1_555 A K 23 C K K 1_555 A DG 19 A O6 DG 19 1_555 152.4 A DG 15 A O6 DG 15 1_555 A K 23 C K K 1_555 A DG 19 A O6 DG 19 1_555 64.6 A DG 16 A O6 DG 16 1_555 A K 23 C K K 1_555 A DG 19 A O6 DG 19 1_555 93.7 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 A DG 20 A O6 DG 20 1_555 92.5 A DG 4 A O6 DG 4 1_555 A K 23 C K K 1_555 A DG 20 A O6 DG 20 1_555 79.3 A DG 7 A O6 DG 7 1_555 A K 23 C K K 1_555 A DG 20 A O6 DG 20 1_555 155.5 A DG 8 A O6 DG 8 1_555 A K 23 C K K 1_555 A DG 20 A O6 DG 20 1_555 133.2 A DG 15 A O6 DG 15 1_555 A K 23 C K K 1_555 A DG 20 A O6 DG 20 1_555 121.4 A DG 16 A O6 DG 16 1_555 A K 23 C K K 1_555 A DG 20 A O6 DG 20 1_555 78.6 A DG 19 A O6 DG 19 1_555 A K 23 C K K 1_555 A DG 20 A O6 DG 20 1_555 70.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HO5' OP1 DC DG 1 2 1.54 10 A A HO5' OP1 DC DG 1 2 1.60 1 A DC 1 0.093 SIDE CHAIN 1 A DG 2 0.064 SIDE CHAIN 1 A DG 15 0.068 SIDE CHAIN 1 A DG 16 0.058 SIDE CHAIN 1 A DG 20 0.077 SIDE CHAIN 2 A DG 8 0.069 SIDE CHAIN 2 A DG 16 0.055 SIDE CHAIN 2 A DG 19 0.065 SIDE CHAIN 3 A DG 3 0.063 SIDE CHAIN 3 A DG 4 0.056 SIDE CHAIN 3 A DG 8 0.062 SIDE CHAIN 3 A DG 18 0.067 SIDE CHAIN 3 A DG 19 0.068 SIDE CHAIN 4 A DG 2 0.061 SIDE CHAIN 4 A DG 4 0.056 SIDE CHAIN 4 A DC 5 0.077 SIDE CHAIN 4 A DG 8 0.085 SIDE CHAIN 4 A DG 15 0.051 SIDE CHAIN 4 A DA 17 0.098 SIDE CHAIN 4 A DG 18 0.074 SIDE CHAIN 4 A DG 20 0.088 SIDE CHAIN 4 A DT 21 0.086 SIDE CHAIN 5 A DG 4 0.109 SIDE CHAIN 5 A DC 5 0.081 SIDE CHAIN 5 A DG 12 0.060 SIDE CHAIN 6 A DG 10 0.056 SIDE CHAIN 6 A DG 20 0.082 SIDE CHAIN 7 A DC 1 0.077 SIDE CHAIN 7 A DG 2 0.068 SIDE CHAIN 7 A DG 3 0.067 SIDE CHAIN 7 A DG 6 0.067 SIDE CHAIN 7 A DG 10 0.057 SIDE CHAIN 7 A DG 14 0.078 SIDE CHAIN 7 A DG 15 0.075 SIDE CHAIN 7 A DG 18 0.068 SIDE CHAIN 8 A DC 1 0.084 SIDE CHAIN 8 A DG 2 0.088 SIDE CHAIN 8 A DG 3 0.058 SIDE CHAIN 8 A DA 13 0.109 SIDE CHAIN 8 A DG 19 0.066 SIDE CHAIN 9 A DC 1 0.126 SIDE CHAIN 9 A DG 2 0.065 SIDE CHAIN 9 A DG 4 0.054 SIDE CHAIN 9 A DG 8 0.069 SIDE CHAIN 9 A DC 11 0.108 SIDE CHAIN 9 A DG 15 0.066 SIDE CHAIN 9 A DA 17 0.061 SIDE CHAIN 9 A DG 19 0.069 SIDE CHAIN 10 A DC 1 0.079 SIDE CHAIN 10 A DG 3 0.065 SIDE CHAIN 10 A DG 6 0.060 SIDE CHAIN 10 A DG 12 0.074 SIDE CHAIN 10 A DG 14 0.123 SIDE CHAIN 10 A DG 16 0.081 SIDE CHAIN 10 A DG 19 0.073 SIDE CHAIN 1 3.41 0.30 108.30 111.71 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 3.78 0.60 118.90 122.68 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 -5.24 0.70 121.90 116.66 A A A N3 C2 O2 DC DC DC 1 1 1 N 1 3.92 0.30 108.30 112.22 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 2.40 0.30 108.30 110.70 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -4.99 0.70 121.90 116.91 A A A N3 C2 O2 DC DC DC 5 5 5 N 1 3.63 0.30 108.30 111.93 A A A O4' C1' N9 DG DG DG 7 7 7 N 1 -4.69 0.70 121.90 117.21 A A A N3 C2 O2 DC DC DC 9 9 9 N 1 4.37 0.30 108.30 112.67 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 -5.72 0.70 121.90 116.18 A A A N3 C2 O2 DC DC DC 11 11 11 N 1 4.74 0.30 108.30 113.04 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 3.42 0.30 108.30 111.72 A A A O4' C1' N9 DA DA DA 13 13 13 N 1 -3.71 0.50 117.00 113.29 A A A C4 C5 C6 DA DA DA 13 13 13 N 1 3.90 0.50 117.70 121.60 A A A C5 C6 N1 DA DA DA 13 13 13 N 1 -6.09 0.60 118.60 112.51 A A A N1 C6 N6 DA DA DA 13 13 13 N 1 3.05 0.30 108.30 111.35 A A A O4' C1' N9 DG DG DG 15 15 15 N 1 2.97 0.30 108.30 111.27 A A A O4' C1' N9 DG DG DG 16 16 16 N 1 3.43 0.30 108.30 111.73 A A A O4' C1' N9 DA DA DA 17 17 17 N 1 -3.53 0.50 117.00 113.47 A A A C4 C5 C6 DA DA DA 17 17 17 N 1 3.66 0.50 117.70 121.36 A A A C5 C6 N1 DA DA DA 17 17 17 N 1 -6.16 0.60 118.60 112.44 A A A N1 C6 N6 DA DA DA 17 17 17 N 1 6.43 0.30 108.30 114.73 A A A O4' C1' N9 DG DG DG 18 18 18 N 1 4.67 0.30 108.30 112.97 A A A O4' C1' N9 DG DG DG 19 19 19 N 1 3.14 0.30 108.30 111.44 A A A O4' C1' N1 DT DT DT 21 21 21 N 1 -3.72 0.60 122.90 119.18 A A A C6 C5 C7 DT DT DT 21 21 21 N 2 -5.71 0.70 121.90 116.19 A A A N3 C2 O2 DC DC DC 1 1 1 N 2 3.41 0.30 108.30 111.71 A A A O4' C1' N9 DG DG DG 3 3 3 N 2 1.88 0.30 108.30 110.18 A A A O4' C1' N9 DG DG DG 4 4 4 N 2 2.89 0.30 108.30 111.19 A A A O4' C1' N1 DC DC DC 5 5 5 N 2 -5.28 0.70 121.90 116.62 A A A N3 C2 O2 DC DC DC 5 5 5 N 2 3.18 0.30 108.30 111.48 A A A O4' C1' N9 DG DG DG 7 7 7 N 2 3.07 0.30 108.30 111.37 A A A O4' C1' N9 DG DG DG 8 8 8 N 2 6.43 0.30 108.30 114.73 A A A O4' C1' N1 DC DC DC 9 9 9 N 2 2.41 0.40 121.90 124.31 A A A N3 C4 C5 DC DC DC 9 9 9 N 2 3.72 0.60 118.90 122.62 A A A N1 C2 O2 DC DC DC 9 9 9 N 2 -5.57 0.70 121.90 116.33 A A A N3 C2 O2 DC DC DC 9 9 9 N 2 1.84 0.30 108.30 110.14 A A A O4' C1' N1 DC DC DC 11 11 11 N 2 -4.83 0.70 121.90 117.07 A A A N3 C2 O2 DC DC DC 11 11 11 N 2 1.91 0.30 108.30 110.21 A A A O4' C1' N9 DG DG DG 12 12 12 N 2 4.80 0.30 108.30 113.10 A A A O4' C1' N9 DA DA DA 13 13 13 N 2 4.00 0.50 117.70 121.70 A A A C5 C6 N1 DA DA DA 13 13 13 N 2 -5.16 0.60 118.60 113.44 A A A N1 C6 N6 DA DA DA 13 13 13 N 2 3.78 0.30 108.30 112.08 A A A O4' C1' N9 DG DG DG 15 15 15 N 2 -4.53 0.70 119.90 115.37 A A A N3 C2 N2 DG DG DG 15 15 15 N 2 2.24 0.30 108.30 110.54 A A A O4' C1' N9 DG DG DG 16 16 16 N 2 2.24 0.30 108.30 110.54 A A A O4' C1' N9 DA DA DA 17 17 17 N 2 -3.10 0.50 117.00 113.90 A A A C4 C5 C6 DA DA DA 17 17 17 N 2 3.41 0.50 117.70 121.11 A A A C5 C6 N1 DA DA DA 17 17 17 N 2 -5.98 0.60 118.60 112.62 A A A N1 C6 N6 DA DA DA 17 17 17 N 2 2.85 0.30 108.30 111.15 A A A O4' C1' N9 DG DG DG 18 18 18 N 2 2.70 0.30 108.30 111.00 A A A O4' C1' N9 DG DG DG 19 19 19 N 2 2.27 0.30 108.30 110.57 A A A O4' C1' N9 DG DG DG 20 20 20 N 2 3.23 0.30 108.30 111.53 A A A O4' C1' N1 DT DT DT 21 21 21 N 2 -3.64 0.60 122.90 119.26 A A A C6 C5 C7 DT DT DT 21 21 21 N 3 4.73 0.30 108.30 113.03 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 -4.31 0.70 121.90 117.59 A A A N3 C2 O2 DC DC DC 1 1 1 N 3 2.51 0.30 108.30 110.81 A A A O4' C1' N9 DG DG DG 4 4 4 N 3 -4.62 0.70 121.90 117.28 A A A N3 C2 O2 DC DC DC 5 5 5 N 3 4.26 0.30 108.30 112.56 A A A O4' C1' N9 DG DG DG 7 7 7 N 3 3.46 0.30 108.30 111.76 A A A O4' C1' N9 DG DG DG 8 8 8 N 3 2.77 0.30 108.30 111.07 A A A O4' C1' N1 DC DC DC 9 9 9 N 3 -4.93 0.70 121.90 116.97 A A A N3 C2 O2 DC DC DC 9 9 9 N 3 2.93 0.30 108.30 111.23 A A A O4' C1' N9 DG DG DG 10 10 10 N 3 7.02 0.30 108.30 115.32 A A A O4' C1' N1 DC DC DC 11 11 11 N 3 -5.05 0.70 121.90 116.85 A A A N3 C2 O2 DC DC DC 11 11 11 N 3 2.83 0.30 108.30 111.13 A A A O4' C1' N9 DA DA DA 13 13 13 N 3 -3.41 0.50 117.00 113.59 A A A C4 C5 C6 DA DA DA 13 13 13 N 3 4.00 0.50 117.70 121.70 A A A C5 C6 N1 DA DA DA 13 13 13 N 3 -6.63 0.60 118.60 111.97 A A A N1 C6 N6 DA DA DA 13 13 13 N 3 3.10 0.30 108.30 111.40 A A A O4' C1' N9 DG DG DG 15 15 15 N 3 2.90 0.30 108.30 111.20 A A A O4' C1' N9 DA DA DA 17 17 17 N 3 -3.25 0.50 117.00 113.75 A A A C4 C5 C6 DA DA DA 17 17 17 N 3 3.71 0.50 117.70 121.41 A A A C5 C6 N1 DA DA DA 17 17 17 N 3 -5.28 0.60 118.60 113.32 A A A N1 C6 N6 DA DA DA 17 17 17 N 3 5.88 0.30 108.30 114.18 A A A O4' C1' N9 DG DG DG 18 18 18 N 3 4.65 0.30 108.30 112.95 A A A O4' C1' N9 DG DG DG 19 19 19 N 3 1.86 0.30 108.30 110.16 A A A O4' C1' N9 DG DG DG 20 20 20 N 3 -4.01 0.60 122.90 118.89 A A A C6 C5 C7 DT DT DT 21 21 21 N 4 2.94 0.30 108.30 111.24 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 -4.73 0.70 121.90 117.17 A A A N3 C2 O2 DC DC DC 1 1 1 N 4 2.53 0.30 108.30 110.83 A A A O4' C1' N9 DG DG DG 2 2 2 N 4 3.49 0.30 108.30 111.79 A A A O4' C1' N9 DG DG DG 3 3 3 N 4 2.78 0.30 108.30 111.08 A A A O4' C1' N9 DG DG DG 4 4 4 N 4 -5.11 0.70 119.90 114.79 A A A N3 C2 N2 DG DG DG 4 4 4 N 4 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DC DC DC 5 5 5 N 4 -4.45 0.70 121.90 117.45 A A A N3 C2 O2 DC DC DC 5 5 5 N 4 -3.67 0.60 119.90 116.23 A A A N1 C6 O6 DG DG DG 6 6 6 N 4 3.38 0.30 108.30 111.68 A A A O4' C1' N9 DG DG DG 8 8 8 N 4 -4.97 0.70 121.90 116.93 A A A N3 C2 O2 DC DC DC 9 9 9 N 4 7.70 1.20 119.70 127.40 A A A C3' O3' P DC DC DG 9 9 10 Y 4 2.20 0.30 108.30 110.50 A A A O4' C1' N9 DG DG DG 10 10 10 N 4 -5.53 0.70 121.90 116.37 A A A N3 C2 O2 DC DC DC 11 11 11 N 4 2.15 0.30 108.30 110.45 A A A O4' C1' N9 DG DG DG 12 12 12 N 4 -3.15 0.50 117.00 113.85 A A A C4 C5 C6 DA DA DA 13 13 13 N 4 3.26 0.50 117.70 120.96 A A A C5 C6 N1 DA DA DA 13 13 13 N 4 -4.78 0.60 118.60 113.82 A A A N1 C6 N6 DA DA DA 13 13 13 N 4 2.81 0.30 108.30 111.11 A A A O4' C1' N9 DG DG DG 15 15 15 N 4 2.90 0.30 108.30 111.20 A A A O4' C1' N9 DA DA DA 17 17 17 N 4 -3.13 0.50 117.00 113.87 A A A C4 C5 C6 DA DA DA 17 17 17 N 4 3.39 0.50 117.70 121.09 A A A C5 C6 N1 DA DA DA 17 17 17 N 4 -5.75 0.60 118.60 112.85 A A A N1 C6 N6 DA DA DA 17 17 17 N 4 3.27 0.30 108.30 111.57 A A A O4' C1' N9 DG DG DG 18 18 18 N 4 3.77 0.30 108.30 112.07 A A A O4' C1' N9 DG DG DG 19 19 19 N 4 3.61 0.30 108.30 111.91 A A A O4' C1' N9 DG DG DG 20 20 20 N 4 1.82 0.30 108.30 110.12 A A A O4' C1' N1 DT DT DT 21 21 21 N 5 5.99 0.30 108.30 114.29 A A A O4' C1' N1 DC DC DC 1 1 1 N 5 -5.43 0.70 121.90 116.47 A A A N3 C2 O2 DC DC DC 1 1 1 N 5 3.14 0.30 108.30 111.44 A A A O4' C1' N9 DG DG DG 2 2 2 N 5 1.99 0.30 108.30 110.29 A A A O4' C1' N9 DG DG DG 3 3 3 N 5 4.11 0.30 108.30 112.41 A A A O4' C1' N9 DG DG DG 4 4 4 N 5 2.72 0.30 108.30 111.02 A A A O4' C1' N1 DC DC DC 5 5 5 N 5 3.61 0.30 108.30 111.91 A A A O4' C1' N9 DG DG DG 6 6 6 N 5 5.00 0.30 108.30 113.30 A A A O4' C1' N9 DG DG DG 7 7 7 N 5 3.88 0.30 108.30 112.18 A A A O4' C1' N1 DC DC DC 9 9 9 N 5 -5.11 0.70 121.90 116.79 A A A N3 C2 O2 DC DC DC 9 9 9 N 5 -5.24 0.70 121.90 116.66 A A A N3 C2 O2 DC DC DC 11 11 11 N 5 2.36 0.30 108.30 110.66 A A A O4' C1' N9 DA DA DA 13 13 13 N 5 -3.52 0.50 117.00 113.48 A A A C4 C5 C6 DA DA DA 13 13 13 N 5 3.74 0.50 117.70 121.44 A A A C5 C6 N1 DA DA DA 13 13 13 N 5 -5.76 0.60 118.60 112.84 A A A N1 C6 N6 DA DA DA 13 13 13 N 5 3.19 0.30 108.30 111.49 A A A O4' C1' N9 DG DG DG 14 14 14 N 5 3.38 0.30 108.30 111.68 A A A O4' C1' N9 DG DG DG 15 15 15 N 5 2.08 0.30 108.30 110.38 A A A O4' C1' N9 DG DG DG 16 16 16 N 5 3.89 0.30 108.30 112.19 A A A O4' C1' N9 DA DA DA 17 17 17 N 5 -3.20 0.50 117.00 113.80 A A A C4 C5 C6 DA DA DA 17 17 17 N 5 3.84 0.50 117.70 121.54 A A A C5 C6 N1 DA DA DA 17 17 17 N 5 -6.07 0.60 118.60 112.53 A A A N1 C6 N6 DA DA DA 17 17 17 N 5 5.49 0.30 108.30 113.79 A A A O4' C1' N9 DG DG DG 18 18 18 N 5 3.47 0.30 108.30 111.77 A A A O4' C1' N9 DG DG DG 19 19 19 N 5 1.89 0.30 108.30 110.19 A A A O4' C1' N9 DG DG DG 20 20 20 N 5 4.91 0.30 108.30 113.21 A A A O4' C1' N1 DT DT DT 21 21 21 N 6 -4.53 0.70 121.90 117.37 A A A N3 C2 O2 DC DC DC 1 1 1 N 6 2.78 0.30 108.30 111.08 A A A O4' C1' N9 DG DG DG 2 2 2 N 6 2.01 0.30 108.30 110.31 A A A O4' C1' N9 DG DG DG 3 3 3 N 6 5.52 0.30 108.30 113.82 A A A O4' C1' N9 DG DG DG 4 4 4 N 6 3.25 0.30 108.30 111.55 A A A O4' C1' N1 DC DC DC 5 5 5 N 6 -4.86 0.70 121.90 117.04 A A A N3 C2 O2 DC DC DC 5 5 5 N 6 3.62 0.30 108.30 111.92 A A A O4' C1' N9 DG DG DG 6 6 6 N 6 3.28 0.30 108.30 111.58 A A A O4' C1' N9 DG DG DG 7 7 7 N 6 1.84 0.30 108.30 110.14 A A A O4' C1' N9 DG DG DG 8 8 8 N 6 3.68 0.60 118.90 122.58 A A A N1 C2 O2 DC DC DC 9 9 9 N 6 -5.96 0.70 121.90 115.94 A A A N3 C2 O2 DC DC DC 9 9 9 N 6 4.26 0.30 108.30 112.56 A A A O4' C1' N9 DG DG DG 10 10 10 N 6 2.26 0.30 108.30 110.56 A A A O4' C1' N1 DC DC DC 11 11 11 N 6 -4.99 0.70 121.90 116.91 A A A N3 C2 O2 DC DC DC 11 11 11 N 6 3.36 0.30 108.30 111.66 A A A O4' C1' N9 DG DG DG 12 12 12 N 6 4.93 0.30 108.30 113.23 A A A O4' C1' N9 DA DA DA 13 13 13 N 6 -3.16 0.50 117.00 113.84 A A A C4 C5 C6 DA DA DA 13 13 13 N 6 3.65 0.50 117.70 121.35 A A A C5 C6 N1 DA DA DA 13 13 13 N 6 -6.26 0.60 118.60 112.34 A A A N1 C6 N6 DA DA DA 13 13 13 N 6 2.72 0.30 108.30 111.02 A A A O4' C1' N9 DG DG DG 14 14 14 N 6 2.02 0.30 108.30 110.32 A A A O4' C1' N9 DG DG DG 15 15 15 N 6 2.00 0.30 108.30 110.30 A A A O4' C1' N9 DG DG DG 16 16 16 N 6 3.49 0.50 117.70 121.19 A A A C5 C6 N1 DA DA DA 17 17 17 N 6 -4.37 0.60 118.60 114.23 A A A N1 C6 N6 DA DA DA 17 17 17 N 6 4.23 0.30 108.30 112.53 A A A O4' C1' N9 DG DG DG 18 18 18 N 6 5.63 0.30 108.30 113.93 A A A O4' C1' N9 DG DG DG 19 19 19 N 6 4.85 0.30 108.30 113.15 A A A O4' C1' N9 DG DG DG 20 20 20 N 6 2.56 0.30 108.30 110.86 A A A O4' C1' N1 DT DT DT 21 21 21 N 6 -3.73 0.60 122.90 119.17 A A A C6 C5 C7 DT DT DT 21 21 21 N 7 -5.37 0.70 121.90 116.53 A A A N3 C2 O2 DC DC DC 1 1 1 N 7 3.23 0.30 108.30 111.53 A A A O4' C1' N9 DG DG DG 2 2 2 N 7 2.56 0.30 108.30 110.86 A A A O4' C1' N9 DG DG DG 3 3 3 N 7 4.87 0.30 108.30 113.17 A A A O4' C1' N9 DG DG DG 4 4 4 N 7 4.06 0.60 118.90 122.96 A A A N1 C2 O2 DC DC DC 5 5 5 N 7 -6.15 0.70 121.90 115.75 A A A N3 C2 O2 DC DC DC 5 5 5 N 7 2.23 0.30 108.30 110.53 A A A O4' C1' N9 DG DG DG 7 7 7 N 7 2.48 0.30 108.30 110.78 A A A O4' C1' N9 DG DG DG 8 8 8 N 7 3.75 0.30 108.30 112.05 A A A O4' C1' N1 DC DC DC 9 9 9 N 7 -5.03 0.70 121.90 116.87 A A A N3 C2 O2 DC DC DC 9 9 9 N 7 3.93 0.30 108.30 112.23 A A A O4' C1' N1 DC DC DC 11 11 11 N 7 -4.96 0.70 121.90 116.94 A A A N3 C2 O2 DC DC DC 11 11 11 N 7 2.13 0.30 108.30 110.43 A A A O4' C1' N9 DG DG DG 12 12 12 N 7 -3.44 0.50 117.00 113.56 A A A C4 C5 C6 DA DA DA 13 13 13 N 7 4.16 0.50 117.70 121.86 A A A C5 C6 N1 DA DA DA 13 13 13 N 7 -6.63 0.60 118.60 111.97 A A A N1 C6 N6 DA DA DA 13 13 13 N 7 3.12 0.30 108.30 111.42 A A A O4' C1' N9 DG DG DG 14 14 14 N 7 2.28 0.30 108.30 110.58 A A A O4' C1' N9 DG DG DG 16 16 16 N 7 -3.35 0.50 117.00 113.65 A A A C4 C5 C6 DA DA DA 17 17 17 N 7 3.77 0.50 117.70 121.47 A A A C5 C6 N1 DA DA DA 17 17 17 N 7 -4.68 0.60 118.60 113.92 A A A N1 C6 N6 DA DA DA 17 17 17 N 7 3.41 0.30 108.30 111.71 A A A O4' C1' N9 DG DG DG 18 18 18 N 7 4.63 0.30 108.30 112.93 A A A O4' C1' N9 DG DG DG 19 19 19 N 7 4.05 0.30 108.30 112.35 A A A O4' C1' N9 DG DG DG 20 20 20 N 7 -3.88 0.60 122.90 119.02 A A A C6 C5 C7 DT DT DT 21 21 21 N 8 -5.61 0.70 121.90 116.29 A A A N3 C2 O2 DC DC DC 1 1 1 N 8 3.94 0.30 108.30 112.24 A A A O4' C1' N9 DG DG DG 2 2 2 N 8 3.49 0.30 108.30 111.79 A A A O4' C1' N9 DG DG DG 4 4 4 N 8 -4.99 0.70 121.90 116.91 A A A N3 C2 O2 DC DC DC 5 5 5 N 8 3.45 0.30 108.30 111.75 A A A O4' C1' N9 DG DG DG 6 6 6 N 8 -3.68 0.60 119.90 116.22 A A A N1 C6 O6 DG DG DG 6 6 6 N 8 2.77 0.30 108.30 111.07 A A A O4' C1' N9 DG DG DG 7 7 7 N 8 -4.26 0.70 119.90 115.64 A A A N3 C2 N2 DG DG DG 7 7 7 N 8 2.70 0.30 108.30 111.00 A A A O4' C1' N9 DG DG DG 8 8 8 N 8 2.71 0.30 108.30 111.01 A A A O4' C1' N1 DC DC DC 9 9 9 N 8 -5.14 0.70 121.90 116.76 A A A N3 C2 O2 DC DC DC 9 9 9 N 8 2.36 0.30 108.30 110.66 A A A O4' C1' N9 DG DG DG 10 10 10 N 8 4.63 0.30 108.30 112.93 A A A O4' C1' N1 DC DC DC 11 11 11 N 8 6.82 0.30 108.30 115.12 A A A O4' C1' N9 DG DG DG 12 12 12 N 8 -3.24 0.50 117.00 113.76 A A A C4 C5 C6 DA DA DA 13 13 13 N 8 3.68 0.50 117.70 121.38 A A A C5 C6 N1 DA DA DA 13 13 13 N 8 -5.80 0.60 118.60 112.80 A A A N1 C6 N6 DA DA DA 13 13 13 N 8 4.33 0.30 108.30 112.63 A A A O4' C1' N9 DG DG DG 16 16 16 N 8 3.89 0.30 108.30 112.19 A A A O4' C1' N9 DA DA DA 17 17 17 N 8 -3.01 0.50 117.00 113.99 A A A C4 C5 C6 DA DA DA 17 17 17 N 8 3.64 0.50 117.70 121.34 A A A C5 C6 N1 DA DA DA 17 17 17 N 8 -4.98 0.60 118.60 113.62 A A A N1 C6 N6 DA DA DA 17 17 17 N 8 3.46 0.30 108.30 111.76 A A A O4' C1' N9 DG DG DG 18 18 18 N 8 4.96 0.30 108.30 113.26 A A A O4' C1' N9 DG DG DG 19 19 19 N 8 -4.08 0.60 122.90 118.82 A A A C6 C5 C7 DT DT DT 21 21 21 N 9 3.80 0.60 118.90 122.70 A A A N1 C2 O2 DC DC DC 1 1 1 N 9 -5.17 0.70 121.90 116.73 A A A N3 C2 O2 DC DC DC 1 1 1 N 9 2.63 0.30 108.30 110.93 A A A O4' C1' N9 DG DG DG 3 3 3 N 9 4.99 0.30 108.30 113.29 A A A O4' C1' N9 DG DG DG 4 4 4 N 9 3.77 0.30 108.30 112.07 A A A O4' C1' N1 DC DC DC 5 5 5 N 9 -4.51 0.70 121.90 117.39 A A A N3 C2 O2 DC DC DC 5 5 5 N 9 3.09 0.30 108.30 111.39 A A A O4' C1' N9 DG DG DG 7 7 7 N 9 2.41 0.30 108.30 110.71 A A A O4' C1' N9 DG DG DG 8 8 8 N 9 2.77 0.30 108.30 111.07 A A A O4' C1' N1 DC DC DC 9 9 9 N 9 -4.85 0.70 121.90 117.05 A A A N3 C2 O2 DC DC DC 9 9 9 N 9 3.33 0.30 108.30 111.63 A A A O4' C1' N9 DG DG DG 10 10 10 N 9 3.86 0.30 108.30 112.16 A A A O4' C1' N1 DC DC DC 11 11 11 N 9 3.67 0.60 118.90 122.57 A A A N1 C2 O2 DC DC DC 11 11 11 N 9 -5.46 0.70 121.90 116.44 A A A N3 C2 O2 DC DC DC 11 11 11 N 9 4.12 0.30 108.30 112.42 A A A O4' C1' N9 DG DG DG 12 12 12 N 9 4.64 0.30 108.30 112.94 A A A O4' C1' N9 DA DA DA 13 13 13 N 9 -3.62 0.50 117.00 113.38 A A A C4 C5 C6 DA DA DA 13 13 13 N 9 3.73 0.50 117.70 121.43 A A A C5 C6 N1 DA DA DA 13 13 13 N 9 -6.24 0.60 118.60 112.36 A A A N1 C6 N6 DA DA DA 13 13 13 N 9 3.87 0.30 108.30 112.17 A A A O4' C1' N9 DG DG DG 14 14 14 N 9 4.89 0.30 108.30 113.19 A A A O4' C1' N9 DA DA DA 17 17 17 N 9 -3.28 0.50 117.00 113.72 A A A C4 C5 C6 DA DA DA 17 17 17 N 9 4.02 0.50 117.70 121.72 A A A C5 C6 N1 DA DA DA 17 17 17 N 9 -6.01 0.60 118.60 112.59 A A A N1 C6 N6 DA DA DA 17 17 17 N 9 4.43 0.30 108.30 112.73 A A A O4' C1' N9 DG DG DG 18 18 18 N 9 5.77 0.30 108.30 114.07 A A A O4' C1' N9 DG DG DG 19 19 19 N 9 4.95 0.30 108.30 113.25 A A A O4' C1' N1 DT DT DT 21 21 21 N 9 -3.82 0.60 122.90 119.08 A A A C6 C5 C7 DT DT DT 21 21 21 N 10 -5.06 0.70 121.90 116.84 A A A N3 C2 O2 DC DC DC 1 1 1 N 10 2.81 0.30 108.30 111.11 A A A O4' C1' N9 DG DG DG 2 2 2 N 10 2.52 0.30 108.30 110.82 A A A O4' C1' N9 DG DG DG 4 4 4 N 10 3.78 0.30 108.30 112.08 A A A O4' C1' N1 DC DC DC 5 5 5 N 10 -4.76 0.70 121.90 117.14 A A A N3 C2 O2 DC DC DC 5 5 5 N 10 3.54 0.30 108.30 111.84 A A A O4' C1' N9 DG DG DG 6 6 6 N 10 3.63 0.30 108.30 111.93 A A A O4' C1' N9 DG DG DG 7 7 7 N 10 2.94 0.30 108.30 111.24 A A A O4' C1' N9 DG DG DG 8 8 8 N 10 -4.79 0.70 121.90 117.11 A A A N3 C2 O2 DC DC DC 9 9 9 N 10 4.27 0.30 108.30 112.57 A A A O4' C1' N1 DC DC DC 11 11 11 N 10 -4.88 0.70 121.90 117.02 A A A N3 C2 O2 DC DC DC 11 11 11 N 10 1.84 0.30 108.30 110.14 A A A O4' C1' N9 DG DG DG 12 12 12 N 10 3.37 0.50 117.70 121.07 A A A C5 C6 N1 DA DA DA 13 13 13 N 10 -3.66 0.60 118.60 114.94 A A A N1 C6 N6 DA DA DA 13 13 13 N 10 8.17 0.30 108.30 116.47 A A A O4' C1' N9 DG DG DG 14 14 14 N 10 1.97 0.30 108.30 110.27 A A A O4' C1' N9 DG DG DG 16 16 16 N 10 -4.73 0.70 119.90 115.17 A A A N3 C2 N2 DG DG DG 16 16 16 N 10 3.66 0.50 117.70 121.36 A A A C5 C6 N1 DA DA DA 17 17 17 N 10 -4.19 0.60 118.60 114.41 A A A N1 C6 N6 DA DA DA 17 17 17 N 10 4.66 0.30 108.30 112.96 A A A O4' C1' N9 DG DG DG 18 18 18 N 10 4.56 0.30 108.30 112.86 A A A O4' C1' N9 DG DG DG 19 19 19 N 10 -4.38 0.70 119.90 115.52 A A A N3 C2 N2 DG DG DG 19 19 19 N 10 2.33 0.30 108.30 110.63 A A A O4' C1' N9 DG DG DG 20 20 20 N 10 2.90 0.30 108.30 111.20 A A A O4' C1' N1 DT DT DT 21 21 21 N 10 -3.62 0.60 122.90 119.28 A A A C6 C5 C7 DT DT DT 21 21 21 N lowest energy, model 1 A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics 1 N N 2 N N 2 N N metalc 2.658 A DG 2 A O6 DG 2 1_555 A K 22 B K K 1_555 metalc 2.972 A DG 3 A O6 DG 3 1_555 A K 22 B K K 1_555 metalc 2.882 A DG 3 A O6 DG 3 1_555 A K 23 C K K 1_555 metalc 2.690 A DG 4 A O6 DG 4 1_555 A K 23 C K K 1_555 metalc 2.731 A DG 6 A O6 DG 6 1_555 A K 22 B K K 1_555 metalc 2.741 A DG 7 A O6 DG 7 1_555 A K 22 B K K 1_555 metalc 3.046 A DG 7 A O6 DG 7 1_555 A K 23 C K K 1_555 metalc 2.642 A DG 8 A O6 DG 8 1_555 A K 23 C K K 1_555 metalc 2.652 A DG 14 A O6 DG 14 1_555 A K 22 B K K 1_555 metalc 2.818 A DG 15 A O6 DG 15 1_555 A K 22 B K K 1_555 metalc 2.887 A DG 15 A O6 DG 15 1_555 A K 23 C K K 1_555 metalc 2.649 A DG 16 A O6 DG 16 1_555 A K 23 C K K 1_555 metalc 2.647 A DG 18 A O6 DG 18 1_555 A K 22 B K K 1_555 metalc 2.774 A DG 19 A O6 DG 19 1_555 A K 22 B K K 1_555 metalc 2.919 A DG 19 A O6 DG 19 1_555 A K 23 C K K 1_555 metalc 2.711 A DG 20 A O6 DG 20 1_555 A K 23 C K K 1_555 hydrog TYPE_6_PAIR A DG 2 A N1 DG 2 1_555 A DG 6 A O6 DG 6 1_555 hydrog TYPE_6_PAIR A DG 2 A N2 DG 2 1_555 A DG 6 A N7 DG 6 1_555 hydrog TYPE_6_PAIR A DG 2 A N7 DG 2 1_555 A DG 18 A N2 DG 18 1_555 hydrog TYPE_6_PAIR A DG 2 A O6 DG 2 1_555 A DG 18 A N1 DG 18 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 7 A O6 DG 7 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 7 A N7 DG 7 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 19 A N2 DG 19 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 19 A N1 DG 19 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 8 A N7 DG 8 1_555 hydrog TYPE_6_PAIR A DG 4 A N7 DG 4 1_555 A DG 20 A N2 DG 20 1_555 hydrog TYPE_6_PAIR A DG 4 A O6 DG 4 1_555 A DG 20 A N1 DG 20 1_555 hydrog TYPE_6_PAIR A DG 6 A N1 DG 6 1_555 A DG 14 A O6 DG 14 1_555 hydrog TYPE_6_PAIR A DG 6 A N2 DG 6 1_555 A DG 14 A N7 DG 14 1_555 hydrog TYPE_6_PAIR A DG 7 A N1 DG 7 1_555 A DG 15 A O6 DG 15 1_555 hydrog TYPE_6_PAIR A DG 7 A N2 DG 7 1_555 A DG 15 A N7 DG 15 1_555 hydrog TYPE_6_PAIR A DG 8 A N1 DG 8 1_555 A DG 16 A O6 DG 16 1_555 hydrog TYPE_6_PAIR A DG 8 A N2 DG 8 1_555 A DG 16 A N7 DG 16 1_555 hydrog TYPE_6_PAIR A DG 14 A N1 DG 14 1_555 A DG 18 A O6 DG 18 1_555 hydrog TYPE_6_PAIR A DG 14 A N2 DG 14 1_555 A DG 18 A N7 DG 18 1_555 hydrog TYPE_6_PAIR A DG 15 A N1 DG 15 1_555 A DG 19 A O6 DG 19 1_555 hydrog TYPE_6_PAIR A DG 15 A N2 DG 15 1_555 A DG 19 A N7 DG 19 1_555 hydrog TYPE_6_PAIR A DG 16 A N1 DG 16 1_555 A DG 20 A O6 DG 20 1_555 hydrog TYPE_6_PAIR A DG 16 A N2 DG 16 1_555 A DG 20 A N7 DG 20 1_555 hydrog DG-DT MISPAIR A DG 16 A N1 DG 16 1_555 A DT 21 A O4 DT 21 1_555 DNA c-kit2, oncogene, promoter, G-quadruplex, DNA 2KQH PDB 1 1 2KQH CGGGCGGGCGCGAGGGAGGGT 1 21 2KQH 1 21 2KQH A 1 1 21 BINDING SITE FOR RESIDUE K A 22 A K 22 Software 8 BINDING SITE FOR RESIDUE K A 23 A K 23 Software 8 A DG 2 A DG 2 8 1_555 A DG 3 A DG 3 8 1_555 A DG 6 A DG 6 8 1_555 A DG 7 A DG 7 8 1_555 A DG 14 A DG 14 8 1_555 A DG 15 A DG 15 8 1_555 A DG 18 A DG 18 8 1_555 A DG 19 A DG 19 8 1_555 A DG 3 A DG 3 8 1_555 A DG 4 A DG 4 8 1_555 A DG 7 A DG 7 8 1_555 A DG 8 A DG 8 8 1_555 A DG 15 A DG 15 8 1_555 A DG 16 A DG 16 8 1_555 A DG 19 A DG 19 8 1_555 A DG 20 A DG 20 8 1_555