1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Seppala, R. Tossavainen, H. Heikkinen, S. Koskela, H. Kontinen, V. Permi, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N O N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N N N 31 S C N 32 N C N 33 N O N 34 N C N 35 N C N 36 N C N 37 N O N 38 N N N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N N N 51 S C N 52 N C N 53 N O N 54 N C N 55 N C N 56 N C N 57 N O N 58 N O N 59 N O N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N N N 70 N C N 71 N C N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C Y 84 N C Y 85 N N Y 86 N C Y 87 N C Y 88 N N N 89 N O N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 S C N 102 N C N 103 N O N 104 S C N 105 N C N 106 N C N 107 N C N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N N N 123 S C N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N C N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C N 149 N C N 150 N C N 151 N C N 152 N N N 153 N O N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N S N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N C Y 196 N C Y 197 N C Y 198 N C Y 199 N C N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 N C N 234 N O N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 R C N 248 N O N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing Y 85 N sing Y 86 N doub Y 87 N doub N 88 N sing Y 89 N sing N 90 N sing Y 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing Y 191 N doub Y 192 N sing Y 193 N sing N 194 N sing Y 195 N doub N 196 N sing Y 197 N doub N 198 N sing Y 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing Y 260 N doub Y 261 N sing Y 262 N sing N 263 N sing Y 264 N doub N 265 N sing Y 266 N doub N 267 N sing Y 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing UK Bmc Struct.Biol. 1472-6807 9 17 17 10.1186/1472-6807-9-17 19309529 Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA - Implications for the catalytic mechanism of parvulins. 2009 10.2210/pdb2jzv/pdb pdb_00002jzv 12215.917 Foldase protein prsA 5.2.1.8 UNP residues 140-245 1 man polymer no no GPLGSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDK DFEKALFKLKDGEVSEVVKSSFGYHIIKADK GPLGSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDK DFEKALFKLKDGEVSEVVKSSFGYHIIKADK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 292B sample prsA 1280 Staphylococcus aureus 562 Escherichia coli BL21 pGEX-2T plasmid database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Data collection Database references Derived calculations Data collection 1 0 2009-01-20 1 1 2011-07-13 1 2 2022-03-16 1 3 2024-05-29 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details BMRB Y RCSB 2008-01-21 REL REL 2161 structures with the lowest energy 400 25 0.16 2D 1H-15N HSQC 2D 1H-13C HSQC 3D CBCA(CO)NH 3D C(CO)NH 3D HNCO 3D HNCACB 3D HN(CO)CA 3D H(CCO)NH 3D HCCH-TOCSY 3D HCCH-COSY 3D 1H-15N NOESY 3D 1H-13C NOESY 3D iHNCA 3D 1H-13C NOESY (AROM) (H )C (C C )H (H )C (C C C )H J(CN) intensity modulated constant time 13C-HSQC 3D R1 resolved 1H-15N-HSQC 3D R2 resolved 1H-15N-HSQC exchange rate resolved 1H-15N-HSQC 0.3 mM [U-15N] 20 mM 1 mM 1 mM 1 mM [U-15N] 20 mM 1 mM 1 mM 20 6.8 ambient 298 K Structures were refined with molecular dynamics using Born implicit solvent model in AMBER 8.0 molecular dynamics 1 closest to the average 0.3 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA, 92% H2O/8% D2O 92% H2O/8% D2O 1 mM [U-15N] PrsA-PPIase, 20 mM Bis-TRIS, 1 mM sodium azide, 1 mM EDTA, 92% H2O/8% D2O 92% H2O/8% D2O Varian collection VNMR 6.1C Varian processing VNMR 6.1C Goddard chemical shift assignment Sparky 3.110 Goddard data analysis Sparky 3.110 Goddard peak picking Sparky 3.110 Cornilescu, Delaglio and Bax data analysis TALOS 2003.027.13.05 Guntert, Mumenthaler and Wuthrich structure solution CYANA 2.1 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm refinement Amber 8.0 Laskowski and MacArthur quality control ProcheckNMR Vriend quality control What_check 800 Varian INOVA Varian INOVA 600 Varian INOVA Varian INOVA 500 Varian INOVA Varian INOVA 500 Bruker DRX Bruker DRX GLY -5 n 1 GLY -5 A PRO -4 n 2 PRO -4 A LEU -3 n 3 LEU -3 A GLY -2 n 4 GLY -2 A SER -1 n 5 SER -1 A ASP 140 n 6 ASP 140 A SER 141 n 7 SER 141 A LYS 142 n 8 LYS 142 A LYS 143 n 9 LYS 143 A ALA 144 n 10 ALA 144 A SER 145 n 11 SER 145 A HIS 146 n 12 HIS 146 A ILE 147 n 13 ILE 147 A LEU 148 n 14 LEU 148 A ILE 149 n 15 ILE 149 A LYS 150 n 16 LYS 150 A VAL 151 n 17 VAL 151 A LYS 152 n 18 LYS 152 A SER 153 n 19 SER 153 A LYS 154 n 20 LYS 154 A LYS 155 n 21 LYS 155 A SER 156 n 22 SER 156 A ASP 157 n 23 ASP 157 A LYS 158 n 24 LYS 158 A GLU 159 n 25 GLU 159 A GLY 160 n 26 GLY 160 A LEU 161 n 27 LEU 161 A ASP 162 n 28 ASP 162 A ASP 163 n 29 ASP 163 A LYS 164 n 30 LYS 164 A GLU 165 n 31 GLU 165 A ALA 166 n 32 ALA 166 A LYS 167 n 33 LYS 167 A GLN 168 n 34 GLN 168 A LYS 169 n 35 LYS 169 A ALA 170 n 36 ALA 170 A GLU 171 n 37 GLU 171 A GLU 172 n 38 GLU 172 A ILE 173 n 39 ILE 173 A GLN 174 n 40 GLN 174 A LYS 175 n 41 LYS 175 A GLU 176 n 42 GLU 176 A VAL 177 n 43 VAL 177 A SER 178 n 44 SER 178 A LYS 179 n 45 LYS 179 A ASP 180 n 46 ASP 180 A PRO 181 n 47 PRO 181 A SER 182 n 48 SER 182 A LYS 183 n 49 LYS 183 A PHE 184 n 50 PHE 184 A GLY 185 n 51 GLY 185 A GLU 186 n 52 GLU 186 A ILE 187 n 53 ILE 187 A ALA 188 n 54 ALA 188 A LYS 189 n 55 LYS 189 A LYS 190 n 56 LYS 190 A GLU 191 n 57 GLU 191 A SER 192 n 58 SER 192 A MET 193 n 59 MET 193 A ASP 194 n 60 ASP 194 A THR 195 n 61 THR 195 A GLY 196 n 62 GLY 196 A SER 197 n 63 SER 197 A ALA 198 n 64 ALA 198 A LYS 199 n 65 LYS 199 A LYS 200 n 66 LYS 200 A ASP 201 n 67 ASP 201 A GLY 202 n 68 GLY 202 A GLU 203 n 69 GLU 203 A LEU 204 n 70 LEU 204 A GLY 205 n 71 GLY 205 A TYR 206 n 72 TYR 206 A VAL 207 n 73 VAL 207 A LEU 208 n 74 LEU 208 A LYS 209 n 75 LYS 209 A GLY 210 n 76 GLY 210 A GLN 211 n 77 GLN 211 A THR 212 n 78 THR 212 A ASP 213 n 79 ASP 213 A LYS 214 n 80 LYS 214 A ASP 215 n 81 ASP 215 A PHE 216 n 82 PHE 216 A GLU 217 n 83 GLU 217 A LYS 218 n 84 LYS 218 A ALA 219 n 85 ALA 219 A LEU 220 n 86 LEU 220 A PHE 221 n 87 PHE 221 A LYS 222 n 88 LYS 222 A LEU 223 n 89 LEU 223 A LYS 224 n 90 LYS 224 A ASP 225 n 91 ASP 225 A GLY 226 n 92 GLY 226 A GLU 227 n 93 GLU 227 A VAL 228 n 94 VAL 228 A SER 229 n 95 SER 229 A GLU 230 n 96 GLU 230 A VAL 231 n 97 VAL 231 A VAL 232 n 98 VAL 232 A LYS 233 n 99 LYS 233 A SER 234 n 100 SER 234 A SER 235 n 101 SER 235 A PHE 236 n 102 PHE 236 A GLY 237 n 103 GLY 237 A TYR 238 n 104 TYR 238 A HIS 239 n 105 HIS 239 A ILE 240 n 106 ILE 240 A ILE 241 n 107 ILE 241 A LYS 242 n 108 LYS 242 A ALA 243 n 109 ALA 243 A ASP 244 n 110 ASP 244 A LYS 245 n 111 LYS 245 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 207 A O VAL 73 A N LYS 142 A N LYS 8 A N ILE 149 A N ILE 15 A O TYR 238 A O TYR 104 A O HIS 239 A O HIS 105 A N VAL 232 A N VAL 98 1 A SER 229 -80.40 -107.21 1 A GLU 230 -173.28 -177.26 2 A GLU 159 -170.82 133.00 2 A ASP 201 74.00 31.98 2 A ASP 244 -100.02 -163.89 3 A LYS 158 69.66 -23.03 6 A ASP 140 -143.47 30.36 6 A ASP 180 -151.59 89.75 7 A ASP 201 83.83 25.18 9 A ASP 140 -76.40 46.23 11 A SER -1 -96.95 -106.24 11 A ASP 201 76.49 31.45 15 A ASP 201 81.83 33.69 16 A ASP 244 -111.69 -167.58 17 A LYS 154 56.07 3.86 17 A ASP 201 81.59 29.08 18 A ASP 180 -151.47 86.50 20 A GLU 159 -80.56 -95.35 21 A ASP 180 -157.11 86.74 22 A ASP 180 -152.46 84.24 23 A ASP 201 81.41 20.11 25 A ASP 201 82.74 31.75 Solution structure of S. aureus PrsA-PPIase 1 N N A ASP 162 A ASP 28 HELX_P A LYS 179 A LYS 45 1 1 18 A LYS 183 A LYS 49 HELX_P A SER 192 A SER 58 1 2 10 A ASP 194 A ASP 60 HELX_P A LYS 199 A LYS 65 1 3 6 A ASP 213 A ASP 79 HELX_P A LYS 222 A LYS 88 1 4 10 ISOMERASE PPIase, parvulin, foldase, Staphylococcus aureus, proline isomerase, Lipoprotein, Membrane, Palmitate, Rotamase, ISOMERASE PRSA_STAAM UNP 1 140 P60747 DSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKA LFKLKDGEVSEVVKSSFGYHIIKADK 140 245 2JZV 140 245 P60747 A 1 6 111 1 expression tag GLY -5 2JZV A P60747 UNP 1 1 expression tag PRO -4 2JZV A P60747 UNP 2 1 expression tag LEU -3 2JZV A P60747 UNP 3 1 expression tag GLY -2 2JZV A P60747 UNP 4 1 expression tag SER -1 2JZV A P60747 UNP 5 4 anti-parallel anti-parallel anti-parallel A GLU 203 A GLU 69 A LEU 208 A LEU 74 A SER 141 A SER 7 A LYS 150 A LYS 16 A GLY 237 A GLY 103 A ALA 243 A ALA 109 A VAL 232 A VAL 98 A SER 234 A SER 100