1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Robinson, H. Wang, A.H.-J. Sugiyama, H. Kawai, K. Matsunaga, A. Fujimoto, K. Saito, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C11 H16 N5 O7 P 361.248 n 8-METHYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking N 1 N P N 2 N O N 3 N O N 4 N O Y 5 N N Y 6 N C N 7 N N N 8 N C N 9 N N N 10 N N N 11 N C N 12 N O Y 13 N C Y 14 N N Y 15 N C N 16 N C N 17 N C N 18 R C N 19 N O N 20 R C N 21 S C N 22 N O N 23 N C N 24 N O N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N O N 42 N P N 43 N O N 44 N O N 45 N O N 46 N C N 47 R C N 48 N O N 49 S C N 50 N O N 51 N C N 52 R C N 53 N N N 54 N C N 55 N O N 56 N N N 57 N C N 58 N N N 59 N C N 60 N C N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N O N 76 N P N 77 N O N 78 N O N 79 N O N 80 N C N 81 R C N 82 N O N 83 S C N 84 N O N 85 N C N 86 R C Y 87 N N Y 88 N C Y 89 N N Y 90 N C N 91 N C N 92 N O N 93 N N N 94 N C N 95 N N N 96 N N Y 97 N C N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 1 N sing N 2 N sing N 3 N sing N 4 N doub N 5 N sing N 6 N sing N 7 N sing Y 8 N sing Y 9 N sing N 10 N sing N 11 N sing Y 12 N doub N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N doub N 21 N sing Y 22 N sing Y 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing Y 101 N sing Y 102 N sing Y 103 N doub N 104 N sing Y 105 N sing N 106 N sing Y 107 N doub N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 24 1272 1278 10.1093/nar/24.7.1272 8614630 Synthesis, structure and thermodynamic properties of 8-methylguanine-containing oligonucleotides: Z-DNA under physiological salt conditions. 1996 10.2210/pdb1tne/pdb pdb_00001tne 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1824.232 DNA (5'-D(*CP*GP*CP*(8MG)P*CP*G)-3') 2 syn polymer no yes (DC)(DG)(DC)(8MG)(DC)(DG) CGCGCG A,B polydeoxyribonucleotide n n n n n n 3.272 1 19 A 1 B 12 0.962 A_DC1:DG12_B 1 2.877 0.011 -0.012 -0.095 -6.311 1 19 A 2 B 11 0.367 A_DG2:DC11_B 2 5.565 0.054 -0.082 -0.152 6.683 1 19 A 3 B 10 4.104 A_DC3:8MG10_B 3 10.420 -0.560 -0.065 -0.237 -6.665 1 19 A 4 B 9 4.110 A_8MG4:DC9_B 4 10.428 0.561 -0.064 -0.238 6.330 1 19 A 5 B 8 0.359 A_DC5:DG8_B 5 5.583 -0.054 -0.081 -0.152 -3.253 1 19 A 6 B 7 0.959 A_DG6:DC7_B 6 2.903 -0.010 -0.011 -0.095 5.802 -8.687 A A 1 2 39.717 B B 12 11 3.406 -5.529 -0.015 5.047 AA_DC1DG2:DC11DG12_BB 1 1.126 8.086 -6.608 -11.370 4.371 2.553 -49.974 A A 2 3 11.300 B B 11 10 2.756 -9.494 -0.074 -0.898 AA_DG2DC3:8MG10DC11_BB 2 1.527 1.818 -49.098 1.627 0.003 5.823 -6.336 A A 3 4 25.353 B B 10 9 3.806 -2.712 0.000 5.570 AA_DC38MG4:DC98MG10_BB 3 -0.008 -0.079 -5.727 -30.828 -0.060 2.553 -49.981 A A 4 5 11.297 B B 9 8 2.756 -9.493 0.074 -0.898 AA_8MG4DC5:DG8DC9_BB 4 -1.518 -1.806 -49.106 1.627 -0.003 5.804 -8.697 A A 5 6 39.755 B B 8 7 3.406 -5.540 0.015 5.047 AA_DC5DG6:DC7DG8_BB 5 -1.121 -8.046 -6.612 -11.334 -4.344 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Data collection 1 0 1996-07-11 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-03-02 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag Y BNL 1996-02-13 REL REL 1 ROBINSON refinement SPED-REF C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A +G 4 n 4 8MG 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 1 DC 7 B G 8 n 2 DG 8 B C 9 n 3 DC 9 B +G 10 n 4 8MG 10 B C 11 n 5 DC 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric A 8MG 4 A 8MG 4 DG B 8MG 10 B 8MG 4 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DG 2 0.063 SIDE CHAIN 1 B DG 8 0.063 SIDE CHAIN 1 4.58 0.30 108.30 112.88 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 6.72 1.10 109.80 116.52 A A A C5' C4' O4' DG DG DG 2 2 2 N 1 3.64 0.30 108.30 111.94 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 3.37 0.30 108.30 111.67 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 4.59 0.30 108.30 112.89 B B B O4' C1' N1 DC DC DC 7 7 7 N 1 6.72 1.10 109.80 116.52 B B B C5' C4' O4' DG DG DG 8 8 8 N 1 3.67 0.30 108.30 111.97 B B B O4' C1' N1 DC DC DC 9 9 9 N 1 3.37 0.30 108.30 111.67 B B B O4' C1' N1 DC DC DC 11 11 11 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 NMR STUDY OF Z-DNA AT PHYSIOLOGICAL SALT CONDITIONS, MINIMIZED AVERAGE STRUCTURE 1 N N 1 N N covale 1.607 both A DC 3 A O3' DC 3 1_555 A 8MG 4 A P 8MG 4 1_555 covale 1.616 both A 8MG 4 A O3' 8MG 4 1_555 A DC 5 A P DC 5 1_555 covale 1.607 both B DC 9 B O3' DC 3 1_555 B 8MG 10 B P 8MG 4 1_555 covale 1.615 both B 8MG 10 B O3' 8MG 4 1_555 B DC 11 B P DC 5 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B 8MG 10 B N1 8MG 4 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B 8MG 10 B O6 8MG 4 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B 8MG 10 B N2 8MG 4 1_555 hydrog WATSON-CRICK A 8MG 4 A N1 8MG 4 1_555 B DC 9 B N3 DC 3 1_555 hydrog WATSON-CRICK A 8MG 4 A N2 8MG 4 1_555 B DC 9 B O2 DC 3 1_555 hydrog WATSON-CRICK A 8MG 4 A O6 8MG 4 1_555 B DC 9 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 7 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 7 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 7 B N4 DC 1 1_555 DNA Z-DNA, DNA 1TNE PDB 1 1TNE 1 6 1TNE 1 6 1TNE A 1 1 6 7 12 1TNE 7 12 1TNE B 1 1 6 1 P 1