1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Dempsey, B.R. Wrona, M. Moulin, J.M. Gloor, G.B. Jalilehvand, F. Lajoie, G. Shaw, G.S. Shilton, B.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N N N 29 S C N 30 N C N 31 N O N 32 N C N 33 N C N 34 N O N 35 N N N 36 N O N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N C N 51 N O N 52 N O N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N N N 62 R C N 63 N C N 64 N O N 65 N C N 66 N S N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 N C N 97 N C N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 S C N 107 N C N 108 N O N 109 N C Y 110 N C Y 111 N N Y 112 N C Y 113 N C Y 114 N N N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N C N 134 N N N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N N N 169 S C N 170 N C N 171 N O N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 N C Y 187 N C Y 188 N C Y 189 N C Y 190 N C Y 191 N C Y 192 N C N 193 N O N 194 N O N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N O N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing Y 110 N sing Y 111 N doub Y 112 N doub N 113 N sing Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N doub Y 186 N sing Y 187 N sing N 188 N sing Y 189 N doub N 190 N sing Y 191 N doub N 192 N sing Y 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing US Biochemistry BICHAW 0033 0006-2960 43 9361 9371 10.1021/bi0493057 15260479 Solution NMR Structure and X-ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the SecA ATPase. 2004 10.2210/pdb1sx0/pdb pdb_00001sx0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2425.836 SecA C-terminal Zinc Binding Domain 1 syn polymer no no KVGRNDPCPCGSGKKYKQCHGR KVGRNDPCPCGSGKKYKQCHGR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 2004-07-06 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-02 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession Solution NMR Structure and X-Ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the SecA ATPase RCSB Y RCSB 2004-03-30 REL REL Solid phase peptide synthesis, N-terminally acetylated. The sequence of this peptide naturally exists in Escherichia coli sample This structure was determined using standard two-dimensional 1H NMR techniques. This set of structures is the calculation of the initial fold of the domain without using restraints for zinc coordination. A second set of structures has been deposited that is a refinement of this fold using zinc coordination restraints based on EXAFS data for this domain. structures with the least restraint violations 100 20 DQF-COSY 2D NOESY 2D NOESY 50mM NaCl, 5mM NaN3, 3.4mM ZnCl2 7.0 ambient 298 K 50mM NaCl, 5mM NaN3, 7mM ZnCl2 7.0 ambient 298 K structures based on 307 restraints, 274 are NOE-derived distance restraints, 33 are dihedral angle restraints. simulated annealing 1 closest to the average 1.7mM SecA Zinc Binding Domain NA; 20mM deuterated Pipes buffer, 50mM NaCl, 5mM NaN3, 0.5mM TCEP, 3.4mM ZnCl2 90% H2O/10% D2O 3.5mM SecA Zinc Binding Domain NA; 20mM deuterated Pipes buffer, 50mM NaCl, 5mM NaN3, 0.5mM TCEP, 7mM ZnCl2 90% H2O/10% D2O 1.7mM SecA Zinc Binding Domain NA; 20mM deuterated Pipes buffer, 50mM NaCl, 5mM NaN3, 0.5mM TCEP, 3.4mM ZnCl2 100% D2O 3.5mM SecA Zinc Binding Domain NA; 20mM deuterated Pipes buffer, 50mM NaCl, 5mM NaN3, 0.5mM TCEP, 7mM ZnCl2 100% D2O Brunger et al. structure solution CNS 1.1 Delaglio et al. processing NMRPipe 2.1 Varian processing VNMR 6.1c Garrett et al. data analysis Pipp/Stapp 4.3.3 Brunger et al. refinement CNS 1.1 500 Varian UNITY 600 Varian INOVA LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A GLY 3 n 3 GLY 3 A ARG 4 n 4 ARG 4 A ASN 5 n 5 ASN 5 A ASP 6 n 6 ASP 6 A PRO 7 n 7 PRO 7 A CYS 8 n 8 CYS 8 A PRO 9 n 9 PRO 9 A CYS 10 n 10 CYS 10 A GLY 11 n 11 GLY 11 A SER 12 n 12 SER 12 A GLY 13 n 13 GLY 13 A LYS 14 n 14 LYS 14 A LYS 15 n 15 LYS 15 A TYR 16 n 16 TYR 16 A LYS 17 n 17 LYS 17 A GLN 18 n 18 GLN 18 A CYS 19 n 19 CYS 19 A HIS 20 n 20 HIS 20 A GLY 21 n 21 GLY 21 A ARG 22 n 22 ARG 22 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H GLY ASP 3 6 1.59 2 A A O H GLY ASP 3 6 1.60 3 A A O H GLY ASP 3 6 1.55 4 A A O H GLY ASP 3 6 1.60 5 A A O H GLY ASP 3 6 1.59 6 A A O H GLY ASP 3 6 1.58 7 A A O H GLY ASP 3 6 1.58 8 A A O H GLY ASP 3 6 1.58 9 A A O H GLY ASP 3 6 1.57 10 A A O H GLY ASP 3 6 1.57 12 A A O H GLY ASP 3 6 1.58 13 A A O H GLY ASP 3 6 1.58 14 A A O H GLY ASP 3 6 1.57 16 A A O H GLY ASP 3 6 1.57 17 A A O H GLY ASP 3 6 1.60 19 A A O H GLY ASP 3 6 1.58 20 A A O H GLY ASP 3 6 1.59 1 A CYS 19 -150.19 -71.40 2 A ARG 4 -36.97 -29.99 2 A SER 12 -90.21 -62.44 2 A TYR 16 -47.14 -70.44 2 A CYS 19 -150.32 -75.16 3 A ARG 4 -32.02 -35.46 3 A CYS 8 -35.35 134.85 3 A CYS 19 -119.96 -70.35 3 A HIS 20 -87.79 -74.85 4 A ARG 4 -36.38 -30.14 4 A CYS 19 -150.32 -71.47 5 A CYS 8 -39.19 134.41 5 A TYR 16 -48.19 -70.09 5 A CYS 19 -150.37 -74.66 6 A LYS 15 -58.82 172.86 6 A CYS 19 -150.07 -71.85 7 A CYS 8 -39.60 135.27 7 A CYS 19 -150.29 -120.21 8 A CYS 8 -39.59 134.48 8 A TYR 16 -50.15 -71.95 8 A CYS 19 -150.33 -72.80 9 A CYS 19 -150.22 -70.10 9 A HIS 20 -94.08 -86.17 10 A SER 12 -90.20 -61.46 10 A CYS 19 -150.78 -70.05 10 A HIS 20 -99.65 -85.20 11 A ARG 4 -36.38 -30.61 11 A CYS 19 -150.39 -69.95 11 A HIS 20 -91.08 -83.99 12 A CYS 8 -39.23 134.40 12 A CYS 19 -150.05 -71.74 13 A CYS 19 -123.06 -79.20 14 A ARG 4 -33.17 -34.27 14 A CYS 8 -34.09 134.55 14 A CYS 19 -150.17 -69.15 15 A ARG 4 -37.68 -29.66 15 A SER 12 -90.07 -73.94 15 A LYS 14 -79.99 -168.57 15 A CYS 19 -150.41 -71.25 15 A HIS 20 -95.93 -84.05 16 A ARG 4 -32.53 -35.03 16 A CYS 8 -35.25 134.69 16 A CYS 19 -150.33 -69.14 17 A ARG 4 -37.23 -29.99 17 A CYS 19 -150.69 -70.31 17 A HIS 20 -100.24 -86.86 18 A ARG 4 -37.42 -29.46 18 A CYS 19 -150.37 -70.02 19 A CYS 19 -150.20 -120.57 20 A ARG 4 -35.57 -31.01 20 A CYS 8 -38.24 134.11 20 A CYS 19 -150.16 -70.05 Solution NMR Structure and X-Ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the SecA ATPase 1 N N PROTEIN TRANSPORT zinc, metal ion, tetrahedral coordination, no secondary structure, structural zinc coordination, PROTEIN TRANSPORT 1SX0 PDB 1 1SX0 1 22 1SX0 1 22 1SX0 A 1 1 22