0.008217 0.000000 0.000000 0.000000 0.020618 0.000000 0.000000 0.000000 0.015385 0.00000 0.00000 0.00000 Parikh, S.S. Mol, C.D. Slupphaug, G. Bharati, S. Krokan, H.E. Tainer, J.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 121.700 48.500 65.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 O7 P 214.110 2-DEOXY-5-PHOSPHONO-RIBOSE saccharide C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C4 H4 N2 O2 112.087 URACIL non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking UK EMBO J. EMJODG 0897 0261-4189 17 5214 5226 10.1093/emboj/17.17.5214 9724657 Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. 1998 UK Nature NATUAS 0006 0028-0836 384 87 10.1038/384087a0 A Nucleotide-Flipping Mechanism from the Structure of Human Uracil-DNA Glycosylase Bound to DNA 1996 10.2210/pdb1ssp/pdb pdb_00001ssp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 1997-04-19 SINGLE WAVELENGTH M x-ray 1 1.080 1.0 BL7-1 SSRL 1.080 SYNCHROTRON SSRL BEAMLINE BL7-1 2892.878 5'-D(*CP*TP*GP*TP*(D1P)P*AP*TP*CP*TP*T)-3' 1 syn polymer COMPLEXED WITH URACIL 3399.276 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3' 1 syn polymer 25544.137 URACIL-DNA GLYCOSYLASE 3.2.2.3 MITOCHONDRIAL 1 man polymer 112.087 URACIL 1 syn non-polymer 18.015 water 265 nat water UDG, UNG EC 3.2.2.3 no yes (DC)(DT)(DG)(DT)(ORP)(DA)(DT)(DC)(DT)(DT) CTGTXATCTT A polydeoxyribonucleotide no no (DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA)(DG) AAAGATAACAG B polydeoxyribonucleotide no no MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL E polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 3.0 59 VAPOR DIFFUSION, HANGING DROP 6.5 20% PEG 4000, 100 MM HEPES PH 6.5, 10% DIOXANE, 1 MM DITHIOTHREITOL, VAPOR DIFFUSION, HANGING DROP PEG 4000 1 HEPES 1 DIOXANE 1 DITHIOTHREITOL 1 H2O 1 PEG 4000 2 HEPES 2 -4.885 1 19 A 1 B 31 2.019 A_DC1:DG31_B 1 -8.386 0.530 0.082 -0.344 -2.252 1 20 A 2 B 30 -0.303 A_DT2:DA30_B 2 -4.108 -0.063 0.215 -0.268 -3.271 1 19 A 3 B 29 0.549 A_DG3:DC29_B 3 -2.773 -0.573 -0.266 -0.377 15.460 1 20 A 4 B 28 3.755 A_DT4:DA28_B 4 -1.705 -0.260 -0.351 -0.050 -10.872 1 20 A 6 B 26 -0.640 A_DA6:DT26_B 5 -7.700 0.133 -0.243 -0.149 4.478 1 20 A 7 B 25 2.107 A_DT7:DA25_B 6 -11.074 -0.112 -0.012 -0.107 1.678 1 19 A 8 B 24 0.502 A_DC8:DG24_B 7 -13.634 0.319 -0.129 -0.188 -2.790 1 20 A 9 B 23 -1.010 A_DT9:DA23_B 8 -6.585 -0.226 -0.012 -0.311 -0.974 1 20 A 10 B 22 4.135 A_DT10:DA22_B 9 -10.268 0.105 -0.071 -0.140 3.303 38.300 A A 1 2 4.737 B B 31 30 3.254 3.104 -0.307 0.666 AA_DC1DT2:DA30DG31_BB 1 -0.995 1.519 38.167 0.624 0.342 3.402 38.152 A A 2 3 9.951 B B 30 29 3.326 6.463 0.540 0.507 AA_DT2DG3:DC29DA30_BB 2 4.086 -6.291 37.405 -0.073 -0.290 2.857 31.304 A A 3 4 2.859 B B 29 28 2.846 1.542 -0.249 0.248 AA_DG3DT4:DA28DC29_BB 3 -0.426 0.791 31.264 0.206 0.391 2.904 28.209 A A 6 7 -0.566 B B 26 25 2.889 -0.276 -0.290 -0.456 AA_DA6DT7:DA25DT26_BB 4 -1.329 2.728 28.177 -0.878 0.321 3.324 38.281 A A 7 8 7.204 B B 25 24 3.340 4.712 0.100 0.046 AA_DT7DC8:DG24DA25_BB 5 1.082 -1.655 37.985 -0.535 -0.014 3.366 36.159 A A 8 9 5.224 B B 24 23 3.335 3.235 0.730 -0.012 AA_DC8DT9:DA23DG24_BB 6 2.698 -4.356 35.920 -0.488 -0.785 3.194 32.246 A A 9 10 8.195 B B 23 22 3.199 4.536 0.444 0.068 AA_DT9DT10:DA22DA23_BB 7 1.434 -2.590 31.903 -0.670 -0.549 database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1999-05-06 1 1 2008-04-26 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1999-04-28 REL URA URACIL HOH water 1AKZ PDB ENTRY 1AKZ PDB experimental model URA 55 4 URA URA 55 E HOH 407 5 HOH HOH 407 A HOH 540 5 HOH HOH 540 A HOH 575 5 HOH HOH 575 A HOH 589 5 HOH HOH 589 A HOH 600 5 HOH HOH 600 A HOH 607 5 HOH HOH 607 A HOH 608 5 HOH HOH 608 A HOH 609 5 HOH HOH 609 A HOH 619 5 HOH HOH 619 A HOH 621 5 HOH HOH 621 A HOH 622 5 HOH HOH 622 A HOH 645 5 HOH HOH 645 A HOH 652 5 HOH HOH 652 A HOH 719 5 HOH HOH 719 A HOH 754 5 HOH HOH 754 A HOH 781 5 HOH HOH 781 A HOH 782 5 HOH HOH 782 A HOH 818 5 HOH HOH 818 A HOH 911 5 HOH HOH 911 A HOH 917 5 HOH HOH 917 A HOH 918 5 HOH HOH 918 A HOH 922 5 HOH HOH 922 A HOH 923 5 HOH HOH 923 A HOH 953 5 HOH HOH 953 A HOH 954 5 HOH HOH 954 A HOH 545 5 HOH HOH 545 B HOH 587 5 HOH HOH 587 B HOH 610 5 HOH HOH 610 B HOH 611 5 HOH HOH 611 B HOH 612 5 HOH HOH 612 B HOH 648 5 HOH HOH 648 B HOH 650 5 HOH HOH 650 B HOH 783 5 HOH HOH 783 B HOH 784 5 HOH HOH 784 B HOH 785 5 HOH HOH 785 B HOH 786 5 HOH HOH 786 B HOH 797 5 HOH HOH 797 B HOH 919 5 HOH HOH 919 B HOH 947 5 HOH HOH 947 B HOH 948 5 HOH HOH 948 B HOH 949 5 HOH HOH 949 B HOH 951 5 HOH HOH 951 B HOH 952 5 HOH HOH 952 B HOH 400 5 HOH HOH 400 E HOH 402 5 HOH HOH 402 E HOH 403 5 HOH HOH 403 E HOH 408 5 HOH HOH 408 E HOH 410 5 HOH HOH 410 E HOH 411 5 HOH HOH 411 E HOH 412 5 HOH HOH 412 E HOH 420 5 HOH HOH 420 E HOH 421 5 HOH HOH 421 E HOH 422 5 HOH HOH 422 E HOH 423 5 HOH HOH 423 E HOH 424 5 HOH HOH 424 E HOH 425 5 HOH HOH 425 E HOH 427 5 HOH HOH 427 E HOH 430 5 HOH HOH 430 E HOH 431 5 HOH HOH 431 E HOH 432 5 HOH HOH 432 E HOH 433 5 HOH HOH 433 E HOH 434 5 HOH HOH 434 E HOH 435 5 HOH HOH 435 E HOH 438 5 HOH HOH 438 E HOH 439 5 HOH HOH 439 E HOH 440 5 HOH HOH 440 E HOH 441 5 HOH HOH 441 E HOH 452 5 HOH HOH 452 E HOH 473 5 HOH HOH 473 E HOH 477 5 HOH HOH 477 E HOH 480 5 HOH HOH 480 E HOH 522 5 HOH HOH 522 E HOH 523 5 HOH HOH 523 E HOH 525 5 HOH HOH 525 E HOH 527 5 HOH HOH 527 E HOH 532 5 HOH HOH 532 E HOH 534 5 HOH HOH 534 E HOH 543 5 HOH HOH 543 E HOH 549 5 HOH HOH 549 E HOH 550 5 HOH HOH 550 E HOH 551 5 HOH HOH 551 E HOH 556 5 HOH HOH 556 E HOH 557 5 HOH HOH 557 E HOH 563 5 HOH HOH 563 E HOH 590 5 HOH HOH 590 E HOH 596 5 HOH HOH 596 E HOH 597 5 HOH HOH 597 E HOH 599 5 HOH HOH 599 E HOH 601 5 HOH HOH 601 E HOH 602 5 HOH HOH 602 E HOH 606 5 HOH HOH 606 E HOH 614 5 HOH HOH 614 E HOH 615 5 HOH HOH 615 E HOH 617 5 HOH HOH 617 E HOH 618 5 HOH HOH 618 E HOH 626 5 HOH HOH 626 E HOH 627 5 HOH HOH 627 E HOH 628 5 HOH HOH 628 E HOH 629 5 HOH HOH 629 E HOH 631 5 HOH HOH 631 E HOH 632 5 HOH HOH 632 E HOH 633 5 HOH HOH 633 E HOH 634 5 HOH HOH 634 E HOH 636 5 HOH HOH 636 E HOH 637 5 HOH HOH 637 E HOH 638 5 HOH HOH 638 E HOH 639 5 HOH HOH 639 E HOH 640 5 HOH HOH 640 E HOH 641 5 HOH HOH 641 E HOH 642 5 HOH HOH 642 E HOH 643 5 HOH HOH 643 E HOH 702 5 HOH HOH 702 E HOH 703 5 HOH HOH 703 E HOH 704 5 HOH HOH 704 E HOH 707 5 HOH HOH 707 E HOH 708 5 HOH HOH 708 E HOH 709 5 HOH HOH 709 E HOH 710 5 HOH HOH 710 E HOH 711 5 HOH HOH 711 E HOH 712 5 HOH HOH 712 E HOH 714 5 HOH HOH 714 E HOH 715 5 HOH HOH 715 E HOH 716 5 HOH HOH 716 E HOH 717 5 HOH HOH 717 E HOH 720 5 HOH HOH 720 E HOH 721 5 HOH HOH 721 E HOH 722 5 HOH HOH 722 E HOH 723 5 HOH HOH 723 E HOH 724 5 HOH HOH 724 E HOH 726 5 HOH HOH 726 E HOH 727 5 HOH HOH 727 E HOH 728 5 HOH HOH 728 E HOH 731 5 HOH HOH 731 E HOH 732 5 HOH HOH 732 E HOH 733 5 HOH HOH 733 E HOH 734 5 HOH HOH 734 E HOH 735 5 HOH HOH 735 E HOH 736 5 HOH HOH 736 E HOH 737 5 HOH HOH 737 E HOH 738 5 HOH HOH 738 E HOH 739 5 HOH HOH 739 E HOH 740 5 HOH HOH 740 E HOH 741 5 HOH HOH 741 E HOH 742 5 HOH HOH 742 E HOH 743 5 HOH HOH 743 E HOH 744 5 HOH HOH 744 E HOH 745 5 HOH HOH 745 E HOH 746 5 HOH HOH 746 E HOH 747 5 HOH HOH 747 E HOH 748 5 HOH HOH 748 E HOH 749 5 HOH HOH 749 E HOH 750 5 HOH HOH 750 E HOH 751 5 HOH HOH 751 E HOH 752 5 HOH HOH 752 E HOH 753 5 HOH HOH 753 E HOH 756 5 HOH HOH 756 E HOH 757 5 HOH HOH 757 E HOH 758 5 HOH HOH 758 E HOH 759 5 HOH HOH 759 E HOH 760 5 HOH HOH 760 E HOH 761 5 HOH HOH 761 E HOH 762 5 HOH HOH 762 E HOH 763 5 HOH HOH 763 E HOH 765 5 HOH HOH 765 E HOH 766 5 HOH HOH 766 E HOH 767 5 HOH HOH 767 E HOH 768 5 HOH HOH 768 E HOH 769 5 HOH HOH 769 E HOH 771 5 HOH HOH 771 E HOH 772 5 HOH HOH 772 E HOH 773 5 HOH HOH 773 E HOH 774 5 HOH HOH 774 E HOH 775 5 HOH HOH 775 E HOH 776 5 HOH HOH 776 E HOH 779 5 HOH HOH 779 E HOH 780 5 HOH HOH 780 E HOH 787 5 HOH HOH 787 E HOH 790 5 HOH HOH 790 E HOH 791 5 HOH HOH 791 E HOH 792 5 HOH HOH 792 E HOH 793 5 HOH HOH 793 E HOH 795 5 HOH HOH 795 E HOH 796 5 HOH HOH 796 E HOH 798 5 HOH HOH 798 E HOH 799 5 HOH HOH 799 E HOH 800 5 HOH HOH 800 E HOH 801 5 HOH HOH 801 E HOH 802 5 HOH HOH 802 E HOH 804 5 HOH HOH 804 E HOH 805 5 HOH HOH 805 E HOH 806 5 HOH HOH 806 E HOH 807 5 HOH HOH 807 E HOH 808 5 HOH HOH 808 E HOH 809 5 HOH HOH 809 E HOH 810 5 HOH HOH 810 E HOH 811 5 HOH HOH 811 E HOH 812 5 HOH HOH 812 E HOH 813 5 HOH HOH 813 E HOH 814 5 HOH HOH 814 E HOH 815 5 HOH HOH 815 E HOH 816 5 HOH HOH 816 E HOH 817 5 HOH HOH 817 E HOH 819 5 HOH HOH 819 E HOH 820 5 HOH HOH 820 E HOH 821 5 HOH HOH 821 E HOH 822 5 HOH HOH 822 E HOH 823 5 HOH HOH 823 E HOH 824 5 HOH HOH 824 E HOH 825 5 HOH HOH 825 E HOH 826 5 HOH HOH 826 E HOH 828 5 HOH HOH 828 E HOH 829 5 HOH HOH 829 E HOH 830 5 HOH HOH 830 E HOH 831 5 HOH HOH 831 E HOH 832 5 HOH HOH 832 E HOH 835 5 HOH HOH 835 E HOH 836 5 HOH HOH 836 E HOH 837 5 HOH HOH 837 E HOH 838 5 HOH HOH 838 E HOH 900 5 HOH HOH 900 E HOH 901 5 HOH HOH 901 E HOH 902 5 HOH HOH 902 E HOH 903 5 HOH HOH 903 E HOH 904 5 HOH HOH 904 E HOH 905 5 HOH HOH 905 E HOH 906 5 HOH HOH 906 E HOH 907 5 HOH HOH 907 E HOH 908 5 HOH HOH 908 E HOH 909 5 HOH HOH 909 E HOH 910 5 HOH HOH 910 E HOH 912 5 HOH HOH 912 E HOH 913 5 HOH HOH 913 E HOH 914 5 HOH HOH 914 E HOH 915 5 HOH HOH 915 E HOH 916 5 HOH HOH 916 E HOH 920 5 HOH HOH 920 E HOH 921 5 HOH HOH 921 E HOH 924 5 HOH HOH 924 E HOH 925 5 HOH HOH 925 E HOH 926 5 HOH HOH 926 E HOH 927 5 HOH HOH 927 E HOH 928 5 HOH HOH 928 E HOH 929 5 HOH HOH 929 E HOH 930 5 HOH HOH 930 E HOH 931 5 HOH HOH 931 E HOH 932 5 HOH HOH 932 E HOH 933 5 HOH HOH 933 E HOH 934 5 HOH HOH 934 E HOH 935 5 HOH HOH 935 E HOH 936 5 HOH HOH 936 E HOH 937 5 HOH HOH 937 E HOH 938 5 HOH HOH 938 E HOH 939 5 HOH HOH 939 E HOH 940 5 HOH HOH 940 E HOH 941 5 HOH HOH 941 E HOH 942 5 HOH HOH 942 E HOH 943 5 HOH HOH 943 E HOH 944 5 HOH HOH 944 E HOH 945 5 HOH HOH 945 E HOH 946 5 HOH HOH 946 E HOH 950 5 HOH HOH 950 E HOH 955 5 HOH HOH 955 E HOH 956 5 HOH HOH 956 E HOH 957 5 HOH HOH 957 E HOH 958 5 HOH HOH 958 E C 1 n 1 DC 1 A T 2 n 2 DT 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A D1P 5 n 5 ORP 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A C 8 n 8 DC 8 A T 9 n 9 DT 9 A T 10 n 10 DT 10 A A 21 n 1 DA 21 B A 22 n 2 DA 22 B A 23 n 3 DA 23 B G 24 n 4 DG 24 B A 25 n 5 DA 25 B T 26 n 6 DT 26 B A 27 n 7 DA 27 B A 28 n 8 DA 28 B C 29 n 9 DC 29 B A 30 n 10 DA 30 B G 31 n 11 DG 31 B MET 82 n 1 MET 82 E GLU 83 n 2 GLU 83 E PHE 84 n 3 PHE 84 E PHE 85 n 4 PHE 85 E GLY 86 n 5 GLY 86 E GLU 87 n 6 GLU 87 E SER 88 n 7 SER 88 E TRP 89 n 8 TRP 89 E LYS 90 n 9 LYS 90 E LYS 91 n 10 LYS 91 E HIS 92 n 11 HIS 92 E LEU 93 n 12 LEU 93 E SER 94 n 13 SER 94 E GLY 95 n 14 GLY 95 E GLU 96 n 15 GLU 96 E PHE 97 n 16 PHE 97 E GLY 98 n 17 GLY 98 E LYS 99 n 18 LYS 99 E PRO 100 n 19 PRO 100 E TYR 101 n 20 TYR 101 E PHE 102 n 21 PHE 102 E ILE 103 n 22 ILE 103 E LYS 104 n 23 LYS 104 E LEU 105 n 24 LEU 105 E MET 106 n 25 MET 106 E GLY 107 n 26 GLY 107 E PHE 108 n 27 PHE 108 E VAL 109 n 28 VAL 109 E ALA 110 n 29 ALA 110 E GLU 111 n 30 GLU 111 E GLU 112 n 31 GLU 112 E ARG 113 n 32 ARG 113 E LYS 114 n 33 LYS 114 E HIS 115 n 34 HIS 115 E TYR 116 n 35 TYR 116 E THR 117 n 36 THR 117 E VAL 118 n 37 VAL 118 E TYR 119 n 38 TYR 119 E PRO 120 n 39 PRO 120 E PRO 121 n 40 PRO 121 E PRO 122 n 41 PRO 122 E HIS 123 n 42 HIS 123 E GLN 124 n 43 GLN 124 E VAL 125 n 44 VAL 125 E PHE 126 n 45 PHE 126 E THR 127 n 46 THR 127 E TRP 128 n 47 TRP 128 E THR 129 n 48 THR 129 E GLN 130 n 49 GLN 130 E MET 131 n 50 MET 131 E CYS 132 n 51 CYS 132 E ASP 133 n 52 ASP 133 E ILE 134 n 53 ILE 134 E LYS 135 n 54 LYS 135 E ASP 136 n 55 ASP 136 E VAL 137 n 56 VAL 137 E LYS 138 n 57 LYS 138 E VAL 139 n 58 VAL 139 E VAL 140 n 59 VAL 140 E ILE 141 n 60 ILE 141 E LEU 142 n 61 LEU 142 E GLY 143 n 62 GLY 143 E GLN 144 n 63 GLN 144 E ASP 145 n 64 ASP 145 E PRO 146 n 65 PRO 146 E TYR 147 n 66 TYR 147 E HIS 148 n 67 HIS 148 E GLY 149 n 68 GLY 149 E PRO 150 n 69 PRO 150 E ASN 151 n 70 ASN 151 E GLN 152 n 71 GLN 152 E ALA 153 n 72 ALA 153 E HIS 154 n 73 HIS 154 E GLY 155 n 74 GLY 155 E LEU 156 n 75 LEU 156 E CYS 157 n 76 CYS 157 E PHE 158 n 77 PHE 158 E SER 159 n 78 SER 159 E VAL 160 n 79 VAL 160 E GLN 161 n 80 GLN 161 E ARG 162 n 81 ARG 162 E PRO 163 n 82 PRO 163 E VAL 164 n 83 VAL 164 E PRO 165 n 84 PRO 165 E PRO 166 n 85 PRO 166 E PRO 167 n 86 PRO 167 E PRO 168 n 87 PRO 168 E SER 169 n 88 SER 169 E LEU 170 n 89 LEU 170 E GLU 171 n 90 GLU 171 E ASN 172 n 91 ASN 172 E ILE 173 n 92 ILE 173 E TYR 174 n 93 TYR 174 E LYS 175 n 94 LYS 175 E GLU 176 n 95 GLU 176 E LEU 177 n 96 LEU 177 E SER 178 n 97 SER 178 E THR 179 n 98 THR 179 E ASP 180 n 99 ASP 180 E ILE 181 n 100 ILE 181 E GLU 182 n 101 GLU 182 E ASP 183 n 102 ASP 183 E PHE 184 n 103 PHE 184 E VAL 185 n 104 VAL 185 E HIS 186 n 105 HIS 186 E PRO 187 n 106 PRO 187 E GLY 188 n 107 GLY 188 E HIS 189 n 108 HIS 189 E GLY 190 n 109 GLY 190 E ASP 191 n 110 ASP 191 E LEU 192 n 111 LEU 192 E SER 193 n 112 SER 193 E GLY 194 n 113 GLY 194 E TRP 195 n 114 TRP 195 E ALA 196 n 115 ALA 196 E LYS 197 n 116 LYS 197 E GLN 198 n 117 GLN 198 E GLY 199 n 118 GLY 199 E VAL 200 n 119 VAL 200 E LEU 201 n 120 LEU 201 E LEU 202 n 121 LEU 202 E LEU 203 n 122 LEU 203 E ASN 204 n 123 ASN 204 E ALA 205 n 124 ALA 205 E VAL 206 n 125 VAL 206 E LEU 207 n 126 LEU 207 E THR 208 n 127 THR 208 E VAL 209 n 128 VAL 209 E ARG 210 n 129 ARG 210 E ALA 211 n 130 ALA 211 E HIS 212 n 131 HIS 212 E GLN 213 n 132 GLN 213 E ALA 214 n 133 ALA 214 E ASN 215 n 134 ASN 215 E SER 216 n 135 SER 216 E HIS 217 n 136 HIS 217 E LYS 218 n 137 LYS 218 E GLU 219 n 138 GLU 219 E ARG 220 n 139 ARG 220 E GLY 221 n 140 GLY 221 E TRP 222 n 141 TRP 222 E GLU 223 n 142 GLU 223 E GLN 224 n 143 GLN 224 E PHE 225 n 144 PHE 225 E THR 226 n 145 THR 226 E ASP 227 n 146 ASP 227 E ALA 228 n 147 ALA 228 E VAL 229 n 148 VAL 229 E VAL 230 n 149 VAL 230 E SER 231 n 150 SER 231 E TRP 232 n 151 TRP 232 E LEU 233 n 152 LEU 233 E ASN 234 n 153 ASN 234 E GLN 235 n 154 GLN 235 E ASN 236 n 155 ASN 236 E SER 237 n 156 SER 237 E ASN 238 n 157 ASN 238 E GLY 239 n 158 GLY 239 E LEU 240 n 159 LEU 240 E VAL 241 n 160 VAL 241 E PHE 242 n 161 PHE 242 E LEU 243 n 162 LEU 243 E LEU 244 n 163 LEU 244 E TRP 245 n 164 TRP 245 E GLY 246 n 165 GLY 246 E SER 247 n 166 SER 247 E TYR 248 n 167 TYR 248 E ALA 249 n 168 ALA 249 E GLN 250 n 169 GLN 250 E LYS 251 n 170 LYS 251 E LYS 252 n 171 LYS 252 E GLY 253 n 172 GLY 253 E SER 254 n 173 SER 254 E ALA 255 n 174 ALA 255 E ILE 256 n 175 ILE 256 E ASP 257 n 176 ASP 257 E ARG 258 n 177 ARG 258 E LYS 259 n 178 LYS 259 E ARG 260 n 179 ARG 260 E HIS 261 n 180 HIS 261 E HIS 262 n 181 HIS 262 E VAL 263 n 182 VAL 263 E LEU 264 n 183 LEU 264 E GLN 265 n 184 GLN 265 E THR 266 n 185 THR 266 E ALA 267 n 186 ALA 267 E HIS 268 n 187 HIS 268 E PRO 269 n 188 PRO 269 E SER 270 n 189 SER 270 E PRO 271 n 190 PRO 271 E LEU 272 n 191 LEU 272 E SER 273 n 192 SER 273 E VAL 274 n 193 VAL 274 E TYR 275 n 194 TYR 275 E ARG 276 n 195 ARG 276 E GLY 277 n 196 GLY 277 E PHE 278 n 197 PHE 278 E PHE 279 n 198 PHE 279 E GLY 280 n 199 GLY 280 E CYS 281 n 200 CYS 281 E ARG 282 n 201 ARG 282 E HIS 283 n 202 HIS 283 E PHE 284 n 203 PHE 284 E SER 285 n 204 SER 285 E LYS 286 n 205 LYS 286 E THR 287 n 206 THR 287 E ASN 288 n 207 ASN 288 E GLU 289 n 208 GLU 289 E LEU 290 n 209 LEU 290 E LEU 291 n 210 LEU 291 E GLN 292 n 211 GLN 292 E LYS 293 n 212 LYS 293 E SER 294 n 213 SER 294 E GLY 295 n 214 GLY 295 E LYS 296 n 215 LYS 296 E LYS 297 n 216 LYS 297 E PRO 298 n 217 PRO 298 E ILE 299 n 218 ILE 299 E ASP 300 n 219 ASP 300 E TRP 301 n 220 TRP 301 E LYS 302 n 221 LYS 302 E GLU 303 n 222 GLU 303 E LEU 304 n 223 LEU 304 E author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 E O LEU 201 C O LEU 120 E N VAL 139 C N VAL 58 E O VAL 140 C O VAL 59 E N VAL 241 C N VAL 160 E O PHE 242 C O PHE 161 E N HIS 262 C N HIS 181 1 E GLU 83 -159.50 -145.23 1 E GLN 152 -93.26 -70.68 1 E HIS 154 -143.20 20.79 1 E PHE 158 69.64 -6.01 1 E SER 273 -144.21 -11.27 PARHCSDX.PRO TOPHCSDX.PRO PARAM_NDBX.DNA TOP_NDBX.DNA PARAM19.SOL TOPH19.SOL -11.6 0.0 0.0 5.74 0.0 5.95 0.245 0.198 0.198 1.9 20.0 29732 10.0 97.58 RANDOM 100000.0 0.1 1 THROUGHOUT 2 MOLECULAR REPLACEMENT PDB ENTRY 1AKZ 1.9 20.0 265 2498 8 417 1808 0.008 1.34 0.292 0.268 1.99 2953 8 85.3 1.9 20.0 1SSP 30394 0.06 1 18.9 3.3 97.5 1.90 1.97 4.2 0.212 87.1 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement X-PLOR 3.851 WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N E GLU 87 C GLU 6 HELX_P E PHE 97 C PHE 16 1 1 11 E PRO 100 C PRO 19 HELX_P E HIS 115 C HIS 34 1 2 16 E PRO 122 C PRO 41 HELX_P E GLN 124 C GLN 43 5 3 3 E THR 127 C THR 46 HELX_P E GLN 130 C GLN 49 1 4 4 E ILE 134 C ILE 53 HELX_P E ASP 136 C ASP 55 5 5 3 E PRO 168 C PRO 87 HELX_P E ASP 180 C ASP 99 1 6 13 E SER 193 C SER 112 HELX_P E GLN 198 C GLN 117 1 7 6 E TRP 222 C TRP 141 HELX_P E GLN 235 C GLN 154 1 8 14 E SER 247 C SER 166 HELX_P E ALA 255 C ALA 174 1 9 9 E PRO 271 C PRO 190 HELX_P E ARG 276 C ARG 195 1 10 6 E HIS 283 C HIS 202 HELX_P E LYS 293 C LYS 212 1 11 11 covale 1.601 both A DT 4 A O3' DT 4 1_555 A ORP 5 A P ORP 5 1_555 covale 1.597 one A ORP 5 A O3 ORP 5 1_555 A DA 6 A P DA 6 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 31 B N1 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 31 B O6 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 31 B N2 DG 11 1_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 B DA 30 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 B DA 30 B N6 DA 10 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 29 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 29 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 29 B N4 DC 9 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 28 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 28 B N6 DA 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 26 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 26 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 25 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 25 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 24 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 24 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 24 B N2 DG 4 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 B DA 23 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 B DA 23 B N6 DA 3 1_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 B DA 22 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 B DA 22 B N6 DA 2 1_555 HYDROLASE/DNA DNA GLYCOSYLASE, DNA BASE EXCISION REPAIR, URACIL, DNA, PROTEIN/DNA, HYDROLASE-DNA COMPLEX E TYR 119 C TYR 38 1 E PRO 120 C PRO 39 -0.30 E ARG 162 C ARG 81 1 E PRO 163 C PRO 82 0.19 UNG_HUMAN UNP 3 94 P13051 1SSP PDB 1 1SSP 1SSP PDB 2 1SSP 94 313 1SSP 85 304 P13051 E 1 4 223 1 10 1SSP 1 10 1SSP A 2 1 10 21 31 1SSP 21 31 1SSP B 3 1 11 4 parallel parallel parallel E VAL 200 C VAL 119 E ASN 204 C ASN 123 E VAL 139 C VAL 58 E GLY 143 C GLY 62 E VAL 241 C VAL 160 E TRP 245 C TRP 164 E HIS 262 C HIS 181 E THR 266 C THR 185 BINDING SITE FOR RESIDUE URA E 55 E URA 55 Software 10 A ORP 5 A ORP 5 10 1_555 E GLY 143 C GLY 62 10 1_555 E GLN 144 C GLN 63 10 1_555 E ASP 145 C ASP 64 10 1_555 E TYR 147 C TYR 66 10 1_555 E CYS 157 C CYS 76 10 1_555 E PHE 158 C PHE 77 10 1_555 E ASN 204 C ASN 123 10 1_555 E HIS 268 C HIS 187 10 1_555 E HOH 804 G HOH 10 1_555 18 orthorhombic P 21 21 2