*HEADER DNA 28-AUG-02 1MK6 *TITLE SOLUTION STRUCTURE OF THE 8,9-DIHYDRO-8-(N7-GUANYL)-9- *TITLE 2 HYDROXY-AFLATOXIN B1 ADDUCT MISPAIRED WITH DEOXYADENOSINE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: 5'-D(*AP*CP*AP*TP*CP*(X)P*AP*TP*CP*T)-3'; *COMPND 3 CHAIN: A; *COMPND 4 ENGINEERED: YES; *COMPND 5 MOL_ID: 2; *COMPND 6 MOLECULE: 5'-D(*AP*GP*AP*TP*AP*GP*AP*TP*GP*T)-3'; *COMPND 7 CHAIN: B; *COMPND 8 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 MOL_ID: 2; *SOURCE 4 SYNTHETIC: YES *KEYWDS AFLATOXIN B1- GUANINE ADDUCT OPPOSITE AN ADENINE, MIMICKING *KEYWDS 2 GA TRANSITION *EXPDTA NMR, MINIMIZED AVERAGE STRUCTURE *AUTHOR I GIRI, D.S.JOHNSTON, M.P.STONE *REVDAT 1 16-OCT-02 1MK6 0 NMR derived and Empirical restraints used for MD calculations using Amber Best quality distance restraints Base Assign Atom Base Assign Atom dist1 dist2 1 DA5 H2'' 1 DA5 H1' 2.04 2.38 1 DA5 H5' 1 DA5 H8 3.74 4.88 1 DA5 H5' 1 DA5 H2'' 3.54 4.78 1 DA5 H8 1 DA5 H4' 3.72 5.04 2 DC H6 1 DA5 H2'' 2.21 2.99 2 DC H6 1 DA5 H2' 2.72 3.68 2 DC Q5' 1 DA5 H1' 3.11 3.79 2 DC H6 1 DA5 H1' 2.47 3.03 2 DC H5 1 DA5 H2'' 2.51 3.07 2 DC H5 1 DA5 H2' 2.74 3.34 2 DC H5 1 DA5 H1' 3.41 4.17 2 DC H1' 1 DA5 H2 4.12 5.04 2 DC H6 2 DC H1' 2.62 3.64 2 DC H4' 2 DC H6 4.16 5.08 2 DC H3' 2 DC H2' 2.25 2.75 2 DC H2'' 2 DC H1' 2.29 2.79 2 DC H2' 2 DC H1' 2.56 3.14 2 DC H3' 2 DC H1' 2.93 3.97 2 DC H2' 2 DC H6 1.86 2.52 3 DA Q5' 2 DC H1' 2.62 3.54 3 DA H8 2 DC H6 3.87 5.55 3 DA H8 2 DC H2' 3.42 4.18 3 DA H8 2 DC H1' 2.46 3.00 3 DA Q5' 3 DA H8 2.9 3.92 3 DA Q5' 3 DA H2' 3.01 3.69 3 DA H2' 3 DA H8 2.01 2.45 3 DA H1' 3 DA H8 3.43 4.19 3 DA H1' 4 DT H6 2.68 3.28 4 DT M 3 DA H2' 2.57 3.13 4 DT M 3 DA H8 2.41 3.27 4 DT H6 3 DA H2' 3.35 4.53 4 DT M 4 DT H6 2.23 3.03 4 DT Q5' 4 DT H6 3.82 5.16 4 DT Q5' 4 DT H2' 3.65 4.47 4 DT H4' 4 DT H6 3.94 4.82 4 DT H3' 4 DT H2' 2.1 2.56 4 DT H1' 4 DT H6 3.02 3.7 4 DT H1' 4 DT H3 4.3 5.26 4 DT H1' 4 DT H2' 2.83 3.45 5 DC H6 4 DT H1' 2.16 2.92 5 DC H2' 5 DC H6 1.93 2.61 5 DC Q5' 5 DC H6 3.85 4.71 5 DC H4' 5 DC H6 3.62 4.42 5 DC H1' 5 DC H6 2.89 3.61 5 DC H1' 5 DC H2'' 2.29 2.79 5 DC H1' 6 GAF HM 3.86 4.72 6 GAF HM 5 DC H2'' 4.8 5.86 6 GAF H9A 5 DC H6 3.66 4.48 6 GAF H6A 5 DC H6 2.76 3.38 6 GAF H6A 5 DC H5 2.44 2.98 6 GAF H6A 5 DC H3' 4.24 5.18 6 GAF H6A 5 DC H2'' 3.94 4.82 6 GAF H6A 5 DC H2' 3.15 3.85 6 GAF H9A 5 DC H5 2.84 3.84 6 GAF H5B 5 DC H2'' 2.36 3.18 6 GAF Q5' 6 GAF HM 3.91 5.29 6 GAF Q5' 6 GAF H8 3.38 4.58 6 GAF Q5' 6 GAF H5B 4.52 6.12 6 GAF H9A 6 GAF H8A 2.97 4.33 6 GAF H8A 6 GAF H8 3.2 4.34 6 GAF H6A 6 GAF H9 3.03 4.09 6 GAF H6A 6 GAF H8 3.54 4.8 6 GAF H5B 6 GAF H9 4.66 6.3 6 GAF H2? 6 GAF H3? 2.22 3 6 GAF HM 6 GAF H5B 2.38 2.92 6 GAF HM 6 GAF H1' 3.11 3.81 6 GAF H9A 6 GAF H9 2.38 2.9 6 GAF H9A 6 GAF H8 4.24 5.18 6 GAF H9 6 GAF H8A 2.39 2.91 6 GAF H6A 6 GAF H9A 2.33 2.85 6 GAF H6A 6 GAF H8A 3.39 4.15 6 GAF H5B 6 GAF H6A 4.23 5.17 6 GAF H4' 6 GAF H8 4.01 4.89 6 GAF H3? 6 GAF HM 3.04 3.72 6 GAF H2? 6 GAF H3? 2.86 3.5 6 GAF H2'' 6 GAF H1' 2.02 2.48 6 GAF H2' 6 GAF H8 2.03 2.49 6 GAF H2' 6 GAF H1' 2.23 3.01 7 DA H8 6 GAF H1' 2.63 3.55 7 DA H4' 7 DA H8 3.68 4.98 7 DA H3' 7 DA H2'' 1.98 2.68 7 DA H2'' 7 DA H1' 2.37 3.21 7 DA H2' 7 DA H1' 2.35 3.19 7 DA Q5' 7 DA H8 3.73 4.55 7 DA H8 7 DA H1' 3.6 4.4 7 DA H2' 7 DA H8 2.21 2.71 7 DA H1' 8 DT H6 2.52 3.08 8 DT M 7 DA H8 3.02 3.68 8 DT M 7 DA H3' 4.82 6.52 8 DT M 7 DA H1' 3.93 5.31 8 DT Q5' 8 DT H6 3.13 4.23 8 DT M 8 DT H6 2.29 3.09 8 DT H3' 8 DT H2' 2.17 2.65 8 DT H2' 8 DT M 4.39 5.37 8 DT H1' 8 DT H2'' 2.01 2.45 8 DT H3 13 DA H2 3.14 3.84 8 DT H1' 9 DC H6 2.38 2.92 9 DC H6 8 DT H2'' 2.06 2.78 9 DC H5 8 DT M 4.27 5.21 9 DC H5 8 DT H6 3.13 3.83 9 DC H5 8 DT H2' 2.71 3.31 9 DC H3' 9 DC H1' 2.85 3.85 9 DC H2'' 9 DC H1' 1.73 2.35 9 DC Q5' 9 DC H6 3.81 4.65 9 DC H1' 9 DC H6 2.8 3.62 10 DT3 M 9 DC H6 3.01 3.69 10 DT3 H6 9 DC H1' 2.64 3.22 10 DT3 M 9 DC H3' 4.8 6.5 10 DT3 M 9 DC H1' 3.93 5.31 10 DT3 H6 9 DC H2'' 2.15 2.91 10 DT3 Q5' 10 DT3 H4' 1.73 2.35 10 DT3 M 10 DT3 H6 2.32 3.14 10 DT3 Q5' 10 DT3 H6 3.85 4.71 10 DT3 H2'' 10 DT3 H6 2.45 2.99 10 DT3 H2' 10 DT3 H1' 2.25 2.75 11 DA5 Q5' 11 DA5 H8 4.21 5.15 11 DA5 Q5' 11 DA5 H4' 1.91 2.33 11 DA5 Q5' 11 DA5 H2' 3.2 3.92 11 DA5 H3' 11 DA5 H8 3.74 4.58 11 DA5 H2' 11 DA5 H8 2.16 2.64 11 DA5 H1' 11 DA5 H2'' 2.15 2.63 11 DA5 Q5' 11 DA5 H2'' 3.55 4.81 11 DA5 H8 11 DA5 H4' 3.66 4.94 11 DA5 H1' 12 DG H8 2.39 2.93 12 DG H8 11 DA5 H2'' 2.07 2.53 12 DG H2'' 12 DG H8 2.73 3.69 12 DG H2'' 12 DG H1' 2.38 3.22 12 DG Q5' 12 DG H8 3.66 4.48 12 DG H8 12 DG H1' 3.67 4.49 12 DG H2' 12 DG H8 2.21 2.69 12 DG H2' 12 DG H1' 2.83 3.47 12 DG H1' 12 DG H2' 2.74 3.34 13 DA H8 12 DG H1' 2.67 3.61 13 DA Q5' 13 DA H4' 1.93 2.35 13 DA H4' 13 DA H8 4.94 6.04 13 DA H2'' 13 DA H1' 2.32 2.84 13 DA H2' 13 DA H8 1.84 2.24 14 DT H6 13 DA H2'' 2.07 2.81 14 DT H6 13 DA H1' 2.06 2.78 14 DT Q5' 13 DA H1' 3.06 3.74 14 DT M 13 DA H8 3.13 3.83 14 DT M 13 DA H1' 3.84 4.7 14 DT Q5' 14 DT H6 3.77 5.09 14 DT H3' 14 DT H1' 2.97 4.01 14 DT M 14 DT H6 2.72 3.32 14 DT H6 14 DT H1' 3.28 4.0 14 DT H2'' 14 DT H1' 1.96 2.4 14 DT H2'' 14 DT H6 3.28 4.1 15 DA Q5' 15 DA H8 3.76 4.6 15 DA H4' 15 DA H8 3.96 4.84 15 DA H2'' 15 DA H8 3.36 4.1 15 DA H2' 15 DA H8 2.18 2.66 15 DA H2' 15 DA H1' 2.65 3.23 16 DG Q5' 15 DA H1' 2.58 3.48 16 DG H1 6 GAF HM 3.36 4.26 16 DG Q5' 16 DG H1' 3.76 4.6 16 DG H8 16 DG H1' 3.45 4.21 16 DG H4' 16 DG H1' 2.98 3.64 16 DG H2'' 16 DG H8 3.06 3.74 16 DG H2' 16 DG H8 2.2 2.68 17 DA Q5' 17 DA H8 3.09 4.19 17 DA H4' 17 DA H8 3.58 4.84 17 DA H4' 17 DA H3' 2.02 2.72 17 DA H3' 17 DA H8 3.44 4.66 17 DA H2'' 17 DA H1' 2 2.44 17 DA H2' 17 DA H8 1.99 2.43 17 DA H1' 18 DT M 3.08 4.16 18 DT M 17 DA H2'' 2.79 3.77 18 DT M 17 DA H8 2.7 3.3 18 DT H6 17 DA H2' 3.3 4.04 18 DT Q5' 18 DT H2' 3.19 3.89 18 DT H6 18 DT H1' 3.17 3.87 18 DT H3' 18 DT H1' 3.35 4.09 18 DT H2'' 18 DT H1' 2.2 2.7 18 DT H2' 18 DT H1' 2.47 3.01 18 DT M 18 DT H6 2.51 3.33 18 DT H4' 18 DT H6 4.26 5.76 19 DG H8 18 DT H2'' 2.2 2.88 19 DG H8 18 DT H2' 3.34 4.08 19 DG H8 18 DT H1' 2.58 3.16 19 DG H8 19 DG H1' 3.38 4.12 19 DG H4' 19 DG H3' 2.16 2.64 19 DG H4' 19 DG H2' 3.39 4.15 19 DG H4' 19 DG H1' 2.98 3.64 19 DG H3' 19 DG H8 3.88 4.74 19 DG H3' 19 DG H2'' 2.2 2.7 19 DG H2'' 19 DG H8 3.27 3.99 19 DG H2'' 19 DG H1' 2.21 2.71 19 DG H2' 19 DG H8 2.31 3.03 20 DT3 M 19 DG H8 2.72 3.32 20 DT3 M 19 DG H2' 2.77 3.39 20 DT3 H6 19 DG H3' 3.65 4.93 20 DT3 M 20 DT3 H6 2.47 3.35 20 DT3 H2' 20 DT3 H3' 1.98 2.68 20 DT3 H6 19 DG H1' 2.39 2.93 20 DT3 Q5' 20 DT3 H6 3.66 4.48 20 DT3 H2' 20 DT3 M 5.17 6.33 20 DT3 H2' 20 DT3 H6 2.96 3.62 20 DT3 H2'' 20 DT3 H1' 2.03 2.49 20 DT3 H6 20 DT3 H1' 3.03 3.49 Medium quality distance restraints Base Assign Atom Base Assign Atom dist1 dist2 2 DC H6 1 DA5 H8 3.6 5.18 2 DC H6 2 DC H3' 2.71 3.89 2 DC H3' 2 DC H6 2.81 4.05 2 DC H2'' 2 DC H6 2.5 3.6 3 DA H8 2 DC H2'' 2.3 3.32 4 DT M 3 DA H3' 3.65 5.25 4 DT H6 3 DA H8 3.93 5.65 4 DT H3' 4 DT H6 2.81 4.05 5 DC H3' 5 DC H6 2.74 3.94 6 GAF H8A 6 GAF H8 3.36 4.84 6 GAF H2'' 6 GAF H8 2.73 3.89 6 GAF H8 6 GAF H1' 3.66 5.26 6 GAF H5B 6 GAF H8 3.12 4.48 6 GAF H4' 6 GAF H5B 2.87 4.13 6 GAF H3' 6 GAF H8 4.13 5.95 6 GAF H2? 15 DA H1' 3.55 4.87 6 GAF H2? 15 DA H1' 4.30 5.30 6 GAF H2? 15 DA H2 4.00 5.40 6 GAF H3? 15 DA H2 4.07 5.59 8 DT H6 7 DA H8 3.6 5.18 8 DT H3' 8 DT H6 2.79 4.01 8 DT H1' 8 DT H2' 2.04 2.94 9 DC H6 8 DT H6 3.39 4.89 9 DC H6 8 DT H2' 2.5 3.6 9 DC H6 9 DC H3' 2.63 3.79 9 DC H2' 9 DC H6 1.95 2.81 10 DT3 H4' 10 DT3 H6 3.27 4.71 11 DA5 H2'' 11 DA5 H8 2.47 3.55 11 DA5 H1' 11 DA5 H2' 2 2.88 12 DG H8 11 DA5 H2' 2.44 3.5 12 DG H4' 12 DG H8 3.39 4.87 12 DG H3' 12 DG H8 2.88 4.14 13 DA Q5' 13 DA H8 3.14 4.52 13 DA H8 13 DA H1' 2.67 3.83 13 DA H3' 13 DA H8 2.92 4.2 13 DA H3' 13 DA H1' 2.62 3.78 13 DA H2'' 13 DA H8 2.53 3.65 13 DA H2' 13 DA H1' 2.02 2.9 14 DT H2' 14 DT H6 2.07 2.97! Cannonical value 15 DA H2 6 GAF H9 3.84 5.52 15 DA H2 6 GAF H8A 4.43 6.37 15 DA H8 15 DA H1' 2.63 3.79 15 DA H3' 15 DA H1' 2.7 4.18 15 DA H2'' 15 DA H1' 2.36 3.4 16 DG Q5' 16 DG H8 2.7 3.88 16 DG Q5' 16 DG H4' 2.25 3.23 16 DG H4' 16 DG H8 3.42 4.92 17 DA H2 4 DT H3 2.42 3.48 17 DA H2'' 17 DA H8 2.58 3.72 17 DA Q5' 17 DA H3' 3.02 4.36 18 DT H6 17 DA H8 3.93 5.65 18 DT H6 17 DA H2'' 2.36 3.4 18 DT H3' 18 DT H6 2.75 3.95 18 DT H2'' 18 DT H6 2.51 3.61 18 DT H2' 18 DT H6 2.05 2.95 18 DT Q5' 18 DT H6 3.03 4.41 19 DG Q5' 19 DG H8 3.3 4.76 19 DG H3' 19 DG H2'' 2.52 3.16 20 DT3 H6 19 DG H8 3.41 4.91 20 DT3 H6 19 DG H2' 2.53 3.63 20 DT3 H3' 20 DT3 H1' 2.62 3.78 Poor distance restraints Base Assign Atom Base Assign Atom dist1 dist2 1 DA5 H3' 1 DA5 H1' 3.38 4.34 1 DA5 H2'' 1 DA5 H4' 2.65 4.05 1 DA5 H8 1 DA5 H1' 2.2 3.66 1 DA5 H2' 1 DA5 H1' 1.69 2.81 1 DA5 H2 1 DA5 H1' 2.74 4.56 2 DC H5 1 DA5 H8 2.13 3.55 2 DC H2' 2 DC H5 2.5 4.16 2 DC H3' 2 DC H2'' 1.58 2.98 3 DA H2'' 3 DA H8 2.17 3.33 3 DA H4' 3 DA H8 2.78 4.64 3 DA H3' 3 DA H8 2.71 4.53 4 DT H6 3 DA H2'' 2.24 3.44 4 DT M 3 DA H5' 5.24 6.44 4 DT H2' 4 DT H6 2.19 3.65 4 DT H2'' 4 DT H6 2.56 3.8 4 DT H1' 4 DT H3' 1.92 3.92 5 DC H5 4 DT H6 3.22 4.6 5 DC H1' 5 DC H3' 2.62 3.98 5 DC H1' 5 DC H2' 2.16 3.1 5 DC H4' 5 DC H3' 2.36 3.26 5 DC H2' 5 DC H5 2.61 4.35 5 DC H1' 6 GAF H6A 3.24 5.4 6 GAF H5B 5 DC H1' 2.31 3.55 6 GAF H5B 5 DC H2' 1.99 3.33 6 GAF H4' 6 GAF HM 3.41 5.69 6 GAF H3A 6 GAF HM 3.81 6.35 6 GAF H5B 6 GAF H9A 4.15 6.35 6 GAF H4' 6 GAF H1' 2.38 3.64 7 DA H2'' 7 DA H8 2.56 3.66 7 DA H4' 7 DA H1' 3.59 5.25 8 DT H6 7 DA H1' 2.86 4.76 8 DT H2' 8 DT H6 2.24 3.74 8 DT H2'' 8 DT H6 2.35 3.59 8 DT H1' 9 DC H5 2.46 3.78 9 DC H2' 9 DC H1' 1.85 2.83 9 DC Q5' 9 DC H1' 2.87 4.79 9 DC H4' 9 DC H6 2.85 4.27 9 DC H4' 9 DC H2' 2.31 3.85 9 DC H3' 9 DC H6 2.26 3.78 9 DC H2' 9 DC H5 2.56 4.26 10 DT3 M 9 DC H5 2.5 4.18 10 DT3 H6 9 DC H3' 3.02 4.62 10 DT3 H1' 10 DT3 H6 2.38 3.54 10 DT3 H4' 10 DT3 H3' 2.01 2.81 10 DT3 H3' 10 DT3 M 3.8 6.32 10 DT3 H3' 10 DT3 H6 2.31 3.85 11 DA5 H1' 11 DA5 H2 2.76 4.6 11 DA5 H1' 11 DA5 H8 2.42 3.7 12 DG H3' 12 DG H2' 1.47 2.45 12 DG H4' 12 DG H2' 2.24 3.75 13 DA H2 13 DA H1' 2.77 4.61 14 DT H6 13 DA H2' 2.21 3.39 14 DT H4' 14 DT H6 2.84 4.34 14 DT H3' 14 DT H6 2.54 3.9 15 DA H8 14 DT H6 4.05 5.40 15 DA H8 15 DA H3' 3.94 4.98 17 DA H8 16 DG H1' 2.95 4.53 17 DA H4' 17 DA H1' 2.09 3.49 17 DA H2' 17 DA H1' 1.7 2.84 18 DT H6 17 DA H1' 2.64 4.04 18 DT H1' 17 DA H2 3.29 4.87 18 DT H2' 18 DT M 3.26 4.84 19 DG H4' 19 DG H2'' 2.05 3.74 19 DG H4' 19 DG H8 3.03 4.65 19 DG H2' 19 DG H1' 1.86 2.84 20 DT3 H6 19 DG H2'' 2.04 3.36 20 DT3 H4' 20 DT3 H3' 1.21 2.95 20 DT3 H3' 20 DT3 H6 2.47 3.77 20 DT3 H4' 20 DT3 H6 3.06 4.68 Empirical Base pair restraints Base Assign Atom Base Assign Atom dist1 dist2 1 ADE N6 20 THY O4 2.85 3.05 1 ADE N1 20 THY N3 2.72 2.92 1 ADE N1 20 THY O4 3.53 3.73 2 CYT N4 19 GUA O6 2.81 3.01 2 CYT N3 19 GUA N1 2.85 3.05 2 CYT O2 19 GUA N2 2.76 2.96 2 CYT N3 19 GUA N2 3.55 3.75 2 CYT O2 19 GUA O6 5.32 5.52 3 ADE N6 18 THY O4 2.85 3.05 3 ADE N1 18 THY N3 2.72 2.92 3 ADE N1 18 THY O4 3.53 3.73 4 THY O4 17 ADE N6 2.85 3.05 4 THY N3 17 ADE N1 2.72 2.92 4 THY O4 17 ADE N1 3.53 3.73 5 CYT N4 16 GUA O6 2.81 3.16 5 CYT N3 16 GUA N1 2.85 3.2 5 CYT O2 16 GUA N2 2.76 3.11 5 CYT N3 16 GUA N2 3.55 3.9 5 CYT O2 16 GUA O6 5.32 5.67 7 ADE N6 14 THY O4 2.85 3.2 7 ADE N1 14 THY N3 2.72 3.07 7 ADE N1 14 THY O4 3.53 3.88 8 THY O4 13 ADE N6 2.85 3.05 8 THY N3 13 ADE N1 2.72 2.92 8 THY O4 13 ADE N1 3.53 3.73 9 CYT N4 12 GUA O6 2.81 3.01 9 CYT N3 12 GUA N1 2.85 3.05 9 CYT O2 12 GUA N2 2.76 2.96 9 CYT N3 12 GUA N2 3.55 3.75 9 CYT O2 12 GUA O6 5.32 5.52 10 THY O4 11 ADE N6 2.85 3.05 10 THY N3 11 ADE N1 2.72 2.92 10 THY O4 11 ADE N1 3.53 3.73 Sugar Pucker restraints (pseudo rotation angles) derived from DQF-COSY Base Assign Angle lower upper 1 ADE PPA 110 150 2 CYT PPA 135 170 3 ADE PPA 90 130 4 THY PPA 135 170 5 CYT PPA 125 150 7 ADE PPA 130 150 8 THY PPA 90 130 9 CYT PPA 90 125 12 GUA PPA 145 175 13 ADE PPA 130 170 14 THY PPA 100 120 16 GUA PPA 140 163 17 ADE PPA 100 120 18 THY PPA 130 150 19 GUA PPA 140 180 Empirical Torsion angle restraints Base Assign Angle lower upper 2 CYT ALPHA -95 -25 3 ADE ALPHA -95 -25 4 THY ALPHA -95 -25 5 CYT ALPHA -95 -25 6 GAF ALPHA -95 -25 7 ADE ALPHA -95 -25 8 THY ALPHA -95 -25 9 CYT ALPHA -95 -25 10 THY ALPHA -95 -25 12 GUA ALPHA -95 -25 13 ADE ALPHA -95 -25 14 THY ALPHA -95 -25 15 ADE ALPHA -95 -25 16 GUA ALPHA -95 -25 17 ADE ALPHA -95 -25 18 THY ALPHA -95 -25 19 GUA ALPHA -95 -25 20 THY ALPHA -95 -25 Base Assign Angle lower upper 2 CYT BETA -220 -140 3 ADE BETA -220 -140 4 THY BETA -220 -140 5 CYT BETA -220 -140 6 GAF BETA -220 -140 7 ADE BETA -220 -140 8 THY BETA -220 -140 9 CYT BETA -220 -140 10 THY BETA -220 -140 12 GUA BETA -220 -140 13 ADE BETA -220 -140 14 THY BETA -220 -140 15 ADE BETA -220 -140 16 GUA BETA -220 -140 17 ADE BETA -220 -140 18 THY BETA -220 -140 19 GUA BETA -220 -140 20 THY BETA -220 -140 Base Assign Angle lower upper 1 ADE GAMMA 20 100 2 CYT GAMMA 20 100 3 ADE GAMMA 20 100 4 THY GAMMA 20 100 5 CYT GAMMA 20 100 6 GAF GAMMA 20 100 7 ADE GAMMA 20 100 8 THY GAMMA 20 100 9 CYT GAMMA 20 100 10 THY GAMMA 20 100 11 ADE GAMMA 20 100 12 GUA GAMMA 20 100 13 ADE GAMMA 20 100 14 THY GAMMA 20 100 15 ADE GAMMA 20 100 16 GUA GAMMA 20 100 17 ADE GAMMA 20 100 18 THY GAMMA 20 100 19 GUA GAMMA 20 100 20 THY GAMMA 20 100 Base Assign Angle lower upper 1 ADE ZETA -150 -105 2 CYT ZETA -150 -105 3 ADE ZETA -150 -105 4 THY ZETA -150 -105 5 CYT ZETA -170 -85 6 GAF ZETA -170 -85 7 ADE ZETA -150 -100 8 THY ZETA -150 -100 9 CYT ZETA -150 -100 12 GUA ZETA -150 -100 13 ADE ZETA -150 -100 14 THY ZETA -130 -80 15 ADE ZETA -145 -80 16 GUA ZETA -150 -100 17 ADE ZETA -150 -100 18 THY ZETA -150 -100 19 GUA ZETA -150 -100 Base Assign Angle lower upper 2 CYT EPSLN 130 200 3 ADE EPSLN 130 200 4 THY EPSLN 130 200 5 CYT EPSLN 130 200 6 GAF EPSLN 120 250 7 ADE EPSLN 130 200 8 THY EPSLN 130 200 9 CYT EPSLN 130 200 12 GUA EPSLN 130 200 13 ADE EPSLN 130 200 14 THY EPSLN 140 225 15 ADE EPSLN 150 280 16 GUA EPSLN 110 230 17 ADE EPSLN 120 220 18 THY EPSLN 130 200 19 GUA EPSLN 130 200 Entry H atom name Submitted Coord H atom name 1 1H5* A 1 1H5* A 1 189.216 120.013 16.943 2 2H5* A 1 2H5* A 1 189.446 120.995 15.485 3 H4* A 1 H4* A 1 191.721 119.667 17.033 4 H3* A 1 H3* A 1 190.388 121.728 18.175 5 H1* A 1 H1* A 1 193.202 122.639 15.644 6 H8 A 1 H8 A 1 189.643 123.125 14.119 7 1H6 A 1 1H6 A 1 192.852 124.116 8.839 8 2H6 A 1 2H6 A 1 191.280 124.421 9.595 9 H2 A 1 H2 A 1 195.675 122.884 11.882 10 H5T A 1 H5T A 1 189.614 119.183 14.397 11 1H2* A 1 1H2* A 1 190.270 123.114 16.258 12 2H2* A 1 2H2* A 1 191.716 123.798 17.038 13 1H5* C 2 1H5* C 2 195.190 122.158 18.162 14 2H5* C 2 2H5* C 2 195.708 123.087 19.572 15 H4* C 2 H4* C 2 197.065 123.490 17.540 16 H3* C 2 H3* C 2 196.265 125.535 19.262 17 H1* C 2 H1* C 2 196.566 125.725 15.580 18 1H4 C 2 1H4 C 2 192.016 126.956 11.392 19 2H4 C 2 2H4 C 2 190.711 126.724 12.568 20 H5 C 2 H5 C 2 191.170 126.167 14.911 21 H6 C 2 H6 C 2 192.950 125.603 16.490 22 1H2* C 2 1H2* C 2 194.523 126.248 17.804 23 2H2* C 2 2H2* C 2 195.844 127.320 17.268 24 1H5* A 3 1H5* A 3 199.326 126.206 15.390 25 2H5* A 3 2H5* A 3 200.635 126.865 16.383 26 H4* A 3 H4* A 3 200.954 127.652 14.167 27 H3* A 3 H3* A 3 200.932 129.406 16.274 28 H1* A 3 H1* A 3 198.984 130.209 13.030 29 H8 A 3 H8 A 3 196.650 128.822 15.839 30 1H6 A 3 1H6 A 3 192.181 130.116 11.619 31 2H6 A 3 2H6 A 3 192.426 129.522 13.279 32 H2 A 3 H2 A 3 195.980 131.265 9.919 33 1H2* A 3 1H2* A 3 198.671 130.076 16.044 34 2H2* A 3 2H2* A 3 199.443 131.332 15.054 35 1H5* T 4 1H5* T 4 200.836 131.006 11.951 36 2H5* T 4 2H5* T 4 202.353 131.915 11.796 37 H4* T 4 H4* T 4 200.838 133.019 10.361 38 H3* T 4 H3* T 4 201.807 134.410 12.658 39 1H2* T 4 1H2* T 4 199.761 134.644 13.696 40 2H2* T 4 2H2* T 4 199.567 136.007 12.562 41 H1* T 4 H1* T 4 198.406 134.681 10.965 42 H3 T 4 H3 T 4 194.155 133.761 12.034 43 1H5M T 4 1H5M T 4 196.916 131.730 16.071 44 2H5M T 4 2H5M T 4 195.273 132.310 16.370 45 3H5M T 4 3H5M T 4 196.662 133.382 16.653 46 H6 T 4 H6 T 4 198.290 133.276 14.457 47 1H5* C 5 1H5* C 5 200.266 136.662 8.878 48 2H5* C 5 2H5* C 5 201.171 138.173 8.662 49 H4* C 5 H4* C 5 198.887 138.627 8.051 50 H3* C 5 H3* C 5 199.698 139.726 10.721 51 H1* C 5 H1* C 5 196.252 138.567 9.182 52 1H4 C 5 1H4 C 5 194.903 136.154 15.253 53 2H4 C 5 2H4 C 5 193.382 136.246 14.369 54 H5 C 5 H5 C 5 197.028 136.762 14.274 55 H6 C 5 H6 C 5 198.104 137.673 12.253 56 1H2* C 5 1H2* C 5 197.594 139.986 11.443 57 2H2* C 5 2H2* C 5 197.015 140.608 9.883 58 H1* X 6 H1* X 6 193.935 144.663 10.506 59 1H2* X 6 1H2* X 6 196.606 145.105 11.933 60 2H2* X 6 2H2* X 6 195.334 146.325 11.622 61 H3* X 6 H3* X 6 197.356 145.844 9.812 62 H4* X 6 H4* X 6 195.534 144.051 8.485 63 1H5* X 6 1H5* X 6 197.204 142.421 8.378 64 2H5* X 6 2H5* X 6 197.985 143.990 8.188 65 H8 X 6 H8 X 6 196.149 143.060 13.234 66 H1 X 6 H1 X 6 189.893 143.629 14.718 67 1H2 X 6 H21 X 6 189.692 144.872 11.397 68 2H2 X 6 H22 X 6 188.778 144.474 12.822 69 1H2A X 6 1H2A X 6 187.010 140.112 12.184 70 2H2A X 6 2H2A X 6 187.461 141.665 12.920 71 1H3 X 6 1H3 X 6 189.059 139.899 11.169 72 2H3 X 6 2H3 X 6 189.315 141.625 11.599 73 1HM X 6 HM1 X 6 192.697 141.800 9.191 74 2HM X 6 HM2 X 6 191.288 140.949 8.522 75 3HM X 6 HM3 X 6 192.698 140.022 9.068 76 H5B X 6 H5B X 6 194.194 140.868 10.811 77 H6A X 6 H6A X 6 196.681 139.479 14.649 78 H8A X 6 H8A X 6 195.256 142.780 16.434 79 HO9 X 6 HO9 X 6 195.836 140.199 17.154 80 H9 X 6 H9 X 6 193.297 141.070 16.345 81 H9A X 6 H9A X 6 194.584 138.795 15.533 82 1H5* A 7 1H5* A 7 192.560 146.233 8.911 83 2H5* A 7 2H5* A 7 192.766 147.682 7.918 84 H4* A 7 H4* A 7 190.495 147.596 8.618 85 H3* A 7 H3* A 7 192.048 149.851 8.991 86 H1* A 7 H1* A 7 189.687 148.508 11.823 87 H8 A 7 H8 A 7 193.505 147.832 12.320 88 1H6 A 7 1H6 A 7 193.099 145.936 16.882 89 2H6 A 7 2H6 A 7 191.659 145.512 17.843 90 H2 A 7 H2 A 7 188.114 146.718 15.675 91 1H2* A 7 1H2* A 7 192.463 149.583 11.261 92 2H2* A 7 2H2* A 7 190.926 150.462 11.416 93 1H5* T 8 1H5* T 8 187.821 149.525 10.374 94 2H5* T 8 2H5* T 8 186.845 150.805 9.633 95 H4* T 8 H4* T 8 185.784 150.225 11.675 96 H3* T 8 H3* T 8 186.780 152.890 11.407 97 1H2* T 8 1H2* T 8 188.366 152.674 13.086 98 2H2* T 8 2H2* T 8 186.986 153.040 14.144 99 H1* T 8 H1* T 8 186.479 150.709 14.487 100 H3 T 8 H3 T 8 189.279 149.225 17.691 101 1H5M T 8 1H5M T 8 192.414 152.055 14.628 102 2H5M T 8 2H5M T 8 192.453 150.588 13.632 103 3H5M T 8 3H5M T 8 193.104 150.553 15.281 104 H6 T 8 H6 T 8 190.017 151.367 13.439 105 1H5* C 9 1H5* C 9 183.732 151.384 14.637 106 2H5* C 9 2H5* C 9 182.409 152.555 14.525 107 H4* C 9 H4* C 9 182.328 151.644 16.702 108 H3* C 9 H3* C 9 182.653 154.414 16.404 109 H1* C 9 H1* C 9 184.342 152.241 19.109 110 1H4 C 9 1H4 C 9 190.669 152.142 19.410 111 2H4 C 9 2H4 C 9 190.854 152.952 17.848 112 H5 C 9 H5 C 9 188.945 153.351 16.387 113 H6 C 9 H6 C 9 186.495 153.271 16.265 114 1H2* C 9 1H2* C 9 184.875 154.467 17.080 115 2H2* C 9 2H2* C 9 184.129 154.580 18.684 116 1H5* T 10 1H5* T 10 182.339 152.537 20.494 117 2H5* T 10 2H5* T 10 181.198 153.371 21.566 118 H4* T 10 H4* T 10 183.160 152.683 22.847 119 H3* T 10 H3* T 10 182.328 155.449 22.665 120 1H2* T 10 1H2* T 10 184.319 156.130 21.684 121 2H2* T 10 2H2* T 10 184.873 156.161 23.393 122 H1* T 10 H1* T 10 185.651 153.865 23.245 123 H3 T 10 H3 T 10 189.857 154.672 21.900 124 1H5M T 10 1H5M T 10 186.469 156.456 18.000 125 2H5M T 10 2H5M T 10 187.972 155.676 17.479 126 3H5M T 10 3H5M T 10 188.025 157.271 18.248 127 H6 T 10 H6 T 10 185.575 155.485 19.879 128 H3T T 10 H3T T 10 182.268 154.442 24.651 129 1H5* A 11 1H5* A 11 196.704 153.467 30.081 130 2H5* A 11 2H5* A 11 197.281 154.109 28.520 131 H4* A 11 H4* A 11 194.549 152.844 29.007 132 H3* A 11 H3* A 11 197.108 151.633 28.029 133 H1* A 11 H1* A 11 193.541 152.289 26.737 134 H8 A 11 H8 A 11 196.436 152.766 24.147 135 1H6 A 11 1H6 A 11 193.525 154.689 20.604 136 2H6 A 11 2H6 A 11 191.807 155.138 20.635 137 H2 A 11 H2 A 11 190.176 154.191 24.536 138 H5T A 11 H5T A 11 195.240 155.360 28.576 139 1H2* A 11 1H2* A 11 196.324 151.373 25.938 140 2H2* A 11 2H2* A 11 194.944 150.433 26.542 141 1H5* G 12 1H5* G 12 193.114 150.120 29.565 142 2H5* G 12 2H5* G 12 193.112 148.437 30.106 143 H4* G 12 H4* G 12 190.922 149.079 29.300 144 H3* G 12 H3* G 12 192.248 146.773 28.337 145 H1* G 12 H1* G 12 189.881 149.067 26.459 146 H8 G 12 H8 G 12 193.505 149.606 25.195 147 H1 G 12 H1 G 12 188.937 151.415 21.046 148 1H2 G 12 1H2 G 12 186.832 150.232 23.523 149 2H2 G 12 2H2 G 12 186.929 150.915 21.882 150 1H2* G 12 1H2* G 12 192.605 147.693 26.207 151 2H2* G 12 2H2* G 12 191.002 146.979 25.919 152 1H5* A 13 1H5* A 13 187.944 148.260 27.042 153 2H5* A 13 2H5* A 13 187.110 147.017 27.984 154 H4* A 13 H4* A 13 185.571 147.722 26.349 155 H3* A 13 H3* A 13 186.256 145.062 26.510 156 H1* A 13 H1* A 13 186.029 146.873 23.067 157 H8 A 13 H8 A 13 189.683 146.292 24.313 158 1H6 A 13 1H6 A 13 191.884 148.087 20.307 159 2H6 A 13 2H6 A 13 191.264 148.775 18.797 160 H2 A 13 H2 A 13 186.886 148.766 19.064 161 1H2* A 13 1H2* A 13 187.776 145.024 24.719 162 2H2* A 13 2H2* A 13 186.292 144.655 23.810 163 1H5* T 14 1H5* T 14 183.201 146.242 23.261 164 2H5* T 14 2H5* T 14 181.930 145.030 23.010 165 H4* T 14 H4* T 14 182.762 145.838 20.855 166 H3* T 14 H3* T 14 183.296 142.999 21.613 167 1H2* T 14 1H2* T 14 185.088 142.847 20.281 168 2H2* T 14 2H2* T 14 184.145 143.418 18.871 169 H1* T 14 H1* T 14 184.748 145.643 19.189 170 H3 T 14 H3 T 14 189.058 145.535 17.766 171 1H5M T 14 1H5M T 14 190.481 143.941 21.971 172 2H5M T 14 2H5M T 14 189.512 142.463 21.795 173 3H5M T 14 3H5M T 14 188.962 143.763 22.865 174 H6 T 14 H6 T 14 186.846 143.970 21.752 175 1H5* A 15 1H5* A 15 181.583 143.510 17.337 176 2H5* A 15 2H5* A 15 180.564 142.137 16.875 177 H4* A 15 H4* A 15 182.362 142.826 15.206 178 H3* A 15 H3* A 15 181.508 140.280 15.465 179 H1* A 15 H1* A 15 185.263 140.991 15.805 180 H8 A 15 H8 A 15 183.711 140.121 19.269 181 1H6 A 15 1H6 A 15 189.702 140.083 20.885 182 2H6 A 15 2H6 A 15 188.088 139.558 21.438 183 H2 A 15 H2 A 15 189.464 142.084 17.124 184 1H2* A 15 1H2* A 15 182.938 139.685 17.268 185 2H2* A 15 2H2* A 15 183.897 139.086 15.881 186 1H5* G 16 1H5* G 16 183.681 136.997 13.350 187 2H5* G 16 2H5* G 16 184.417 138.584 13.530 188 H4* G 16 H4* G 16 183.969 138.660 10.855 189 H3* G 16 H3* G 16 183.244 136.046 11.091 190 H1* G 16 H1* G 16 186.923 136.884 10.455 191 H8 G 16 H8 G 16 186.397 136.127 14.267 192 H1 G 16 H1 G 16 192.487 136.862 12.281 193 1H2 G 16 1H2 G 16 192.490 137.614 10.161 194 2H2 G 16 2H2 G 16 190.921 137.748 9.338 195 1H2* G 16 1H2* G 16 185.141 135.387 12.408 196 2H2* G 16 2H2* G 16 185.697 134.905 10.781 197 1H5* A 17 1H5* A 17 186.184 137.229 7.399 198 2H5* A 17 2H5* A 17 185.406 136.392 6.049 199 H4* A 17 H4* A 17 187.755 136.713 5.595 200 H3* A 17 H3* A 17 186.498 134.220 5.325 201 H1* A 17 H1* A 17 190.092 134.751 6.741 202 H8 A 17 H8 A 17 187.405 133.760 9.394 203 1H6 A 17 1H6 A 17 192.283 133.328 13.281 204 2H6 A 17 2H6 A 17 190.532 133.134 13.121 205 H2 A 17 H2 A 17 193.784 134.669 9.374 206 1H2* A 17 1H2* A 17 187.500 133.211 7.157 207 2H2* A 17 2H2* A 17 188.811 132.905 5.992 208 1H5* T 18 1H5* T 18 190.824 135.168 4.290 209 2H5* T 18 2H5* T 18 190.984 134.844 2.556 210 H4* T 18 H4* T 18 193.160 134.652 3.513 211 H3* T 18 H3* T 18 192.094 132.488 2.116 212 1H2* T 18 1H2* T 18 191.519 131.250 4.016 213 2H2* T 18 2H2* T 18 193.158 130.612 3.791 214 H1* T 18 H1* T 18 194.131 132.192 5.290 215 H3 T 18 H3 T 18 193.459 131.030 9.615 216 1H5M T 18 1H5M T 18 189.105 129.420 8.186 217 2H5M T 18 2H5M T 18 188.681 130.680 7.013 218 3H5M T 18 3H5M T 18 188.729 131.060 8.748 219 H6 T 18 H6 T 18 190.504 131.410 5.828 220 1H5* G 19 1H5* G 19 196.306 132.591 4.051 221 2H5* G 19 2H5* G 19 197.428 132.067 2.786 222 H4* G 19 H4* G 19 198.392 131.577 4.930 223 H3* G 19 H3* G 19 198.070 129.616 2.939 224 H1* G 19 H1* G 19 197.777 129.098 6.723 225 H8 G 19 H8 G 19 194.247 129.091 5.086 226 H1 G 19 H1 G 19 194.438 126.834 11.128 227 1H2 G 19 1H2 G 19 197.777 127.669 10.870 228 2H2 G 19 2H2 G 19 196.552 126.876 11.878 229 1H2* G 19 1H2* G 19 196.381 128.454 4.082 230 2H2* G 19 2H2* G 19 197.804 127.639 4.798 231 1H5* T 20 1H5* T 20 200.669 128.620 6.692 232 2H5* T 20 2H5* T 20 202.149 127.795 6.174 233 H4* T 20 H4* T 20 201.419 126.723 8.198 234 H3* T 20 H3* T 20 200.612 125.057 5.780 235 1H2* T 20 1H2* T 20 199.692 123.496 7.225 236 2H2* T 20 2H2* T 20 200.764 123.958 8.578 237 H1* T 20 H1* T 20 199.242 125.407 9.373 238 H3 T 20 H3 T 20 195.198 123.464 9.384 239 1H5M T 20 1H5M T 20 194.356 124.663 4.954 240 2H5M T 20 2H5M T 20 195.989 124.923 4.316 241 3H5M T 20 3H5M T 20 195.093 126.269 5.056 242 H6 T 20 H6 T 20 197.753 125.752 6.010 243 H3T T 20 H3T T 20 202.842 125.122 6.110