0.011521 0.000000 0.000000 0.000000 0.012177 0.000000 0.000000 0.000000 0.022107 0.00000 0.00000 0.00000 Chiu, T.K. Sohn, C. Johnson, R.C. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 86.796 82.120 45.234 C9 H12 I N2 O8 P 434.078 n 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N O N 8 N O N 9 N I N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C N 52 N C N 53 N C N 54 N N N 55 N C N 56 N N N 57 N N N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N N N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N O N 92 N P N 93 N O N 94 N O N 95 N O N 96 N C N 97 R C N 98 N O N 99 S C N 100 N O N 101 N C N 102 R C Y 103 N N Y 104 N C Y 105 N N Y 106 N C Y 107 N C N 108 N N Y 109 N N Y 110 N C Y 111 N N Y 112 N C N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N O N 128 N P N 129 N O N 130 N O N 131 N O N 132 N C N 133 R C N 134 N O N 135 S C N 136 N O N 137 N C N 138 R C N 139 N N N 140 N C N 141 N O N 142 N N N 143 N C N 144 N N N 145 N C N 146 N C N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N O N 162 N P N 163 N O N 164 N O N 165 N O N 166 N C N 167 R C N 168 N O N 169 S C N 170 N O N 171 N C N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N O N 199 N P N 200 N O N 201 N O N 202 N O N 203 N C N 204 R C N 205 N O N 206 S C N 207 N O N 208 N C N 209 R C N 210 N N N 211 N C N 212 N O N 213 N N N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N O N 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N O N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 N C N 275 N C N 276 N O N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C Y 288 N C Y 289 N N Y 290 N C Y 291 N C Y 292 N N N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N O N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 S C N 312 N C N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C N 334 N C N 335 N C N 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N C N 359 N N N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N S N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N C N 425 N C N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N N N 437 S C N 438 N C N 439 N O N 440 N C N 441 N O N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 R C N 455 N O N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N C N 468 N C N 469 N C N 470 N C N 471 N N N 472 N O N 473 N O N 474 N O N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N N N 488 S C N 489 N C N 490 N O N 491 N C Y 492 N C Y 493 N C Y 494 N C Y 495 N C Y 496 N C Y 497 N C N 498 N O N 499 N O N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N N N 512 S C N 513 N C N 514 N O N 515 N C N 516 N C N 517 N C N 518 N O N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing Y 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N doub N 121 N sing N 122 N sing Y 123 N sing Y 124 N doub N 125 N sing Y 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N sing Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N doub N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing Y 295 N sing Y 296 N doub Y 297 N doub N 298 N sing Y 299 N sing N 300 N sing Y 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N doub N 487 N sing N 488 N sing N 489 N sing N 490 N sing Y 491 N doub Y 492 N sing Y 493 N sing N 494 N sing Y 495 N doub N 496 N sing Y 497 N doub N 498 N sing Y 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N doub N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing UK EMBO J. EMJODG 0897 0261-4189 21 801 814 10.1093/emboj/21.4.801 11847127 Testing water-mediated DNA recognition by the Hin recombinase. 2002 Thesis 145 241 How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase 2001 US Science SCIEAS 0038 0036-8075 263 348 355 Hin Recombinase Bound to DNA: The Origin of Specificity in Major and Minor Groove Interactions 1994 10.2210/pdb1jj6/pdb pdb_00001jj6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MULTIPLE WAVELENGTH WITH ANOMALOUS SCATTERING USING THREE IODINE AND ONE BROMINE DERIVATIVES. THE IODINE DERIVATIVES REPLACE THYMINE AT POSITIONS 4, 5, AND 7+19 WITH 5-IODO URACIL. THE BROMINE DERIVATIVE REPLACES CYTOSINE AT POSITION 18 WITH 5-BROMO CYTOSINE. CCD 1999-06-01 MAD M x-ray 1 0.980 1.0 X12C NSLS 0.980 SYNCHROTRON NSLS BEAMLINE X12C 4436.707 5'-D(*TP*GP*TP*(5IT)P*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3' 1 syn polymer 4231.806 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3' 1 syn polymer 6047.051 DNA-INVERTASE HIN RESIDUES 139 TO 190 1 syn polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 18.015 water 10 nat water Hin Recombinase no yes (DT)(DG)(DT)(5IU)(DT)(DT)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA) TGTUTTTGATAAGA A polydeoxyribonucleotide no no (DA)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DA)(DA)(DA)(DA)(DC) ATCTTATCAAAAAC B polydeoxyribonucleotide no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.68 52.3 VAPOR DIFFUSION, HANGING DROP 8.5 Hanging drop vapor diffusion at 4C, with initial concentration in drop of 0.13 mM DNA, 0.33 mM Hin, 46 mM Tris (pH 8.5), 46 mM CaCl2, 63 mM NaCl, 11.6% v/v PEG400, and 2.03 mM Na cacodylate. Reservoir solution contains 100 mM Tris (pH 8.5), 100 mM CaCl2, 100 mM NaCl, and 25% PEG400. Concentration of PEG400 in reservoir solution was increased in 5% increments to 35%., VAPOR DIFFUSION, HANGING DROP, temperature 280K 280 DNA 1 HIN 1 Tris 1 CaCl2 1 NaCl 1 PEG 400 1 sodium cacodylate 1 Tris 2 CaCl2 2 NaCl 2 PEG 400 2 -14.120 1 19 A 3 B 29 4.467 A_DG3:DC29_B 1 6.513 -0.049 -0.530 0.012 -1.034 1 20 A 4 B 28 -9.020 A_DT4:DA28_B 2 -8.971 0.222 0.071 0.063 -2.105 A 5 B 27 4.715 A_5IU5:DA27_B 3 -20.074 0.796 -0.076 0.174 0.935 1 20 A 6 B 26 -0.385 A_DT6:DA26_B 4 -27.209 -0.206 -0.489 -0.045 -8.346 1 20 A 7 B 25 -0.963 A_DT7:DA25_B 5 -11.555 -0.718 -0.355 -0.101 -6.663 1 20 A 8 B 24 -0.738 A_DT8:DA24_B 6 -16.533 -0.339 -0.111 0.129 1.910 1 19 A 9 B 23 0.896 A_DG9:DC23_B 7 -4.363 0.119 -0.016 -0.012 7.547 1 20 A 10 B 22 -4.689 A_DA10:DT22_B 8 -12.339 0.516 0.195 -0.172 -2.695 1 20 A 11 B 21 0.820 A_DT11:DA21_B 9 -7.246 -0.279 -0.106 -0.133 2.007 1 20 A 12 B 20 -3.754 A_DA12:DT20_B 10 -12.230 0.506 -0.511 -0.379 8.226 1 20 A 13 B 19 1.990 A_DA13:DT19_B 11 -13.926 0.045 -0.025 -0.004 2.289 1 19 A 14 B 18 0.916 A_DG14:DC18_B 12 -13.088 0.143 -0.094 -0.163 3.029 34.062 A A 3 4 16.550 B B 29 28 3.112 9.551 -1.199 -0.291 AA_DG3DT4:DA28DC29_BB 1 -3.933 6.816 32.502 -1.960 1.444 3.195 32.197 A A 4 5 9.736 B B 28 27 3.228 5.357 0.561 -0.224 AA_DT45IU5:DA27DA28_BB 2 4.723 -8.584 31.416 -1.354 -0.173 3.026 31.794 A A 5 6 10.932 B B 27 26 3.062 5.952 -0.645 0.322 AA_5IU5DT6:DA26DA27_BB 3 1.927 -3.539 31.188 -0.436 1.509 3.546 38.816 A A 6 7 -2.546 B B 26 25 3.540 -1.691 0.906 0.569 AA_DT6DT7:DA25DA26_BB 4 1.560 -2.349 38.750 1.080 -1.157 3.285 36.565 A A 7 8 0.943 B B 25 24 3.251 0.591 -0.548 -0.220 AA_DT7DT8:DA24DA25_BB 5 -3.605 5.755 36.388 -0.432 0.377 3.307 39.119 A A 8 9 4.610 B B 24 23 3.217 3.084 0.788 1.072 AA_DT8DG9:DC23DA24_BB 6 0.972 -1.453 38.990 1.231 -1.061 3.335 38.107 A A 9 10 4.563 B B 23 22 3.199 2.971 -0.947 0.852 AA_DG9DA10:DT22DC23_BB 7 -4.118 6.325 37.780 0.927 0.928 3.778 27.534 A A 10 11 -1.305 B B 22 21 3.723 -0.620 0.709 -0.843 AA_DA10DT11:DA21DT22_BB 8 1.822 -3.831 27.468 -1.597 -0.977 3.546 41.276 A A 11 12 11.855 B B 21 20 3.385 8.302 -0.452 1.269 AA_DT11DA12:DT20DA21_BB 9 1.664 -2.376 40.435 0.844 0.833 3.064 31.356 A A 12 13 -1.002 B B 20 19 3.097 -0.541 0.418 0.209 AA_DA12DA13:DT19DT20_BB 10 -1.830 3.388 31.299 0.483 -1.098 3.240 35.699 A A 13 14 16.528 B B 19 18 3.503 10.002 0.163 -0.446 AA_DA13DG14:DC18DT19_BB 11 -1.519 2.510 34.280 -2.252 -0.497 chem_comp_atom chem_comp_bond database_2 struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-02-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Native Wild-Type HIN Recombinase DNA-Binding Domain Bound to Underivatized HIXL Half-Site FORM1 BR18 DERIVATIVE FORM2 I4 DERIVATIVE FORM1 A10G MUTANT FORM1 T11G MUTANT FORM1 G9T MUTANT FORM1 T11C MUTANT RCSB Y RCSB 2001-07-03 REL REL TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HOH water SYNTHETIC PEPTIDE sample MIRAS PHASES Other experimental model TRS 203 4 TRS TRS 203 C HOH 206 5 HOH HOH 206 A HOH 210 5 HOH HOH 210 A HOH 212 5 HOH HOH 212 A HOH 201 5 HOH HOH 201 B HOH 202 5 HOH HOH 202 B HOH 204 5 HOH HOH 204 B HOH 205 5 HOH HOH 205 C HOH 207 5 HOH HOH 207 C HOH 208 5 HOH HOH 208 C HOH 211 5 HOH HOH 211 C T 2 n 1 DT 2 A G 3 n 2 DG 3 A T 4 n 3 DT 4 A U 5 n 4 5IU 5 A T 6 n 5 DT 6 A T 7 n 6 DT 7 A T 8 n 7 DT 8 A G 9 n 8 DG 9 A A 10 n 9 DA 10 A T 11 n 10 DT 11 A A 12 n 11 DA 12 A A 13 n 12 DA 13 A G 14 n 13 DG 14 A A 15 n 14 DA 15 A A 16 n 1 DA 16 B T 17 n 2 DT 17 B C 18 n 3 DC 18 B T 19 n 4 DT 19 B T 20 n 5 DT 20 B A 21 n 6 DA 21 B T 22 n 7 DT 22 B C 23 n 8 DC 23 B A 24 n 9 DA 24 B A 25 n 10 DA 25 B A 26 n 11 DA 26 B A 27 n 12 DA 27 B A 28 n 13 DA 28 B C 29 n 14 DC 29 B GLY 139 n 1 GLY 139 C ARG 140 n 2 ARG 140 C PRO 141 n 3 PRO 141 C ARG 142 n 4 ARG 142 C ALA 143 n 5 ALA 143 C ILE 144 n 6 ILE 144 C ASN 145 n 7 ASN 145 C LYS 146 n 8 LYS 146 C HIS 147 n 9 HIS 147 C GLU 148 n 10 GLU 148 C GLN 149 n 11 GLN 149 C GLU 150 n 12 GLU 150 C GLN 151 n 13 GLN 151 C ILE 152 n 14 ILE 152 C SER 153 n 15 SER 153 C ARG 154 n 16 ARG 154 C LEU 155 n 17 LEU 155 C LEU 156 n 18 LEU 156 C GLU 157 n 19 GLU 157 C LYS 158 n 20 LYS 158 C GLY 159 n 21 GLY 159 C HIS 160 n 22 HIS 160 C PRO 161 n 23 PRO 161 C ARG 162 n 24 ARG 162 C GLN 163 n 25 GLN 163 C GLN 164 n 26 GLN 164 C LEU 165 n 27 LEU 165 C ALA 166 n 28 ALA 166 C ILE 167 n 29 ILE 167 C ILE 168 n 30 ILE 168 C PHE 169 n 31 PHE 169 C GLY 170 n 32 GLY 170 C ILE 171 n 33 ILE 171 C GLY 172 n 34 GLY 172 C VAL 173 n 35 VAL 173 C SER 174 n 36 SER 174 C THR 175 n 37 THR 175 C LEU 176 n 38 LEU 176 C TYR 177 n 39 TYR 177 C ARG 178 n 40 ARG 178 C TYR 179 n 41 TYR 179 C PHE 180 n 42 PHE 180 C PRO 181 n 43 PRO 181 C ALA 182 n 44 ALA 182 C SER 183 n 45 SER 183 C SER 184 n 46 SER 184 C ILE 185 n 47 ILE 185 C n 48 186 C n 49 187 C n 50 188 C n 51 189 C n 52 190 C author_defined_assembly 3 trimeric A 5IU 5 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE A 5IU 4 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 C CD LYS 146 C CD LYS 8 1 Y 1 C CE LYS 146 C CE LYS 8 1 Y 1 C NZ LYS 146 C NZ LYS 8 1 Y 1 C CG HIS 147 C CG HIS 9 1 Y 1 C ND1 HIS 147 C ND1 HIS 9 1 Y 1 C CD2 HIS 147 C CD2 HIS 9 1 Y 1 C CE1 HIS 147 C CE1 HIS 9 1 Y 1 C NE2 HIS 147 C NE2 HIS 9 1 Y 1 C CG GLU 157 C CG GLU 19 1 Y 1 C CD GLU 157 C CD GLU 19 1 Y 1 C OE1 GLU 157 C OE1 GLU 19 1 Y 1 C OE2 GLU 157 C OE2 GLU 19 1 Y 1 C CG LYS 158 C CG LYS 20 1 Y 1 C CD LYS 158 C CD LYS 20 1 Y 1 C CE LYS 158 C CE LYS 20 1 Y 1 C NZ LYS 158 C NZ LYS 20 1 Y 1 C CG GLN 164 C CG GLN 26 1 Y 1 C CD GLN 164 C CD GLN 26 1 Y 1 C OE1 GLN 164 C OE1 GLN 26 1 Y 1 C NE2 GLN 164 C NE2 GLN 26 1 Y 1 C LYS 186 C LYS 48 1 Y 1 C LYS 187 C LYS 49 1 Y 1 C ARG 188 C ARG 50 1 Y 1 C MET 189 C MET 51 1 Y 1 C ASN 190 C ASN 52 1 Y 1 A DA 15 0.063 SIDE CHAIN 1 B DA 28 0.094 SIDE CHAIN 1 14.34 1.20 119.70 134.04 A A A C3' O3' P 5IU 5IU DT 5 5 6 Y 1 -14.73 1.90 104.00 89.27 A A A O3' P O5' 5IU DT DT 5 6 6 Y 1 19.88 1.10 110.50 130.38 A A A O3' P OP1 5IU DT DT 5 6 6 Y 1 -10.35 1.60 120.90 110.55 A A A P O5' C5' DT DT DT 6 6 6 N 1 15.04 1.20 115.70 130.74 B B B C5' C4' C3' DA DA DA 16 16 16 A N 1 9.10 0.90 103.10 112.20 B B B C4' C3' C2' DA DA DA 16 16 16 B N 1 A A P O5' DT DT 6 6 0.112 0.010 1.593 1.705 N 1 B B C3' C2' DA DA 16 16 -0.100 0.008 1.516 1.416 B N 1 B B C4' C3' DT DT 17 17 -0.105 0.010 1.521 1.416 A N 1 B B C4' C3' DT DT 17 17 -0.097 0.010 1.521 1.424 B N 1 B B O4' C4' DT DT 17 17 0.076 0.009 1.449 1.525 A N 1 B B O4' C4' DT DT 17 17 0.074 0.009 1.449 1.523 B N PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 52 18.32 0.00 0.00 12.82 0.00 -31.13 0.2807 0.238 0.238 2.30 30.00 681 6695 9.1 89.55 RANDOM 1 ANISOTROPIC_FIXED_ISOTROPIC 0.000 MIRAS MIRAS PHASES MLF 100 0.35 0.50 0.41 5.0 0.54 0.59 2.30 30.00 10 954 9 575 360 0.011 1.887 18.16 1.976 2.0 1.5 4.9 3.0 3.0 2.0 7.6 4.0 0.38 0.356 2.40 61 504 8 6.7 55.33 54 2.30 30.0 1JJ6 6695 0.0 0.067 1 21.07 43 89.55 2.30 2.40 6.34 0.192 55.33 phasing SOLVE refinement CNS data reduction DENZO data scaling SCALEPACK Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations. 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N C ASN 145 C ASN 7 HELX_P C LYS 158 C LYS 20 1 1 14 C PRO 161 C PRO 23 HELX_P C GLY 170 C GLY 32 1 2 10 C GLY 172 C GLY 34 HELX_P C PHE 180 C PHE 42 1 3 9 C PRO 181 C PRO 43 HELX_P C ILE 185 C ILE 47 5 4 5 covale 1.604 both A DT 4 A O3' DT 3 1_555 A 5IU 5 A P 5IU 4 1_555 covale 1.599 both A 5IU 5 A O3' 5IU 4 1_555 A DT 6 A P DT 5 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 2 1_555 B DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 2 1_555 B DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 2 1_555 B DC 29 B N4 DC 14 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 3 1_555 B DA 28 B N1 DA 13 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 3 1_555 B DA 28 B N6 DA 13 1_555 hydrog 5IU-DA PAIR A 5IU 5 A N3 5IU 4 1_555 B DA 27 B N1 DA 12 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 5 1_555 B DA 26 B N1 DA 11 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 5 1_555 B DA 26 B N6 DA 11 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 6 1_555 B DA 25 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 6 1_555 B DA 25 B N6 DA 10 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 7 1_555 B DA 24 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 7 1_555 B DA 24 B N6 DA 9 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 8 1_555 B DC 23 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 8 1_555 B DC 23 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 8 1_555 B DC 23 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 9 1_555 B DT 22 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 9 1_555 B DT 22 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 10 1_555 B DA 21 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 10 1_555 B DA 21 B N6 DA 6 1_555 hydrog WATSON-CRICK A DA 12 A N1 DA 11 1_555 B DT 20 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 12 A N6 DA 11 1_555 B DT 20 B O4 DT 5 1_555 hydrog WATSON-CRICK A DA 13 A N1 DA 12 1_555 B DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 13 A N6 DA 12 1_555 B DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK A DG 14 A N1 DG 13 1_555 B DC 18 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A N2 DG 13 1_555 B DC 18 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A O6 DG 13 1_555 B DC 18 B N4 DC 3 1_555 DNA BINDING PROTEIN/DNA WATER-MEDIATED RECOGNITION, PROTEIN-DNA COMPLEX, HIN RECOMBINASE, I5, DNA BINDING PROTEIN-DNA COMPLEX HIN_SALTY UNP 3 139 P03013 1JJ6 PDB 1 1JJ6 1JJ6 PDB 2 1JJ6 139 190 1JJ6 139 190 P03013 C 1 1 52 2 15 1JJ6 2 15 1JJ6 A 2 1 14 16 29 1JJ6 16 29 1JJ6 B 3 1 14 BINDING SITE FOR RESIDUE TRS C 203 C TRS 203 Software 3 A DG 9 A DG 8 3 1_555 B DC 23 B DC 8 3 6_554 C GLY 170 C GLY 32 3 1_555 20 C 2 2 21