0.014810 0.000000 0.000000 0.000000 0.014810 0.000000 0.000000 0.000000 0.007757 0.00000 0.00000 0.00000 Bellizzi III, J.J. Widom, J. Kemp, C. Lu, J.Y. Das, A.K. Hofmann, S.L. Clardy, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.520 67.520 128.920 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C16 H32 O2 256.424 PALMITIC ACID non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 R C N 251 R C N 252 R C N 253 S C N 254 R C N 255 N C N 256 N C N 257 N C N 258 N N N 259 N O N 260 N O N 261 N O N 262 N O N 263 N O N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N C N 304 N O N 305 N O N 306 N C N 307 N C N 308 N C N 309 N C N 310 N C N 311 N C N 312 N C N 313 N C N 314 N C N 315 N C N 316 N C N 317 N C N 318 N C N 319 N C N 320 N C N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C N 358 N C N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N O N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 R C N 389 N O N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N N Y 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N C N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N N N 453 S C N 454 N C N 455 N O N 456 N C N 457 N C N 458 N C N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing Y 278 N doub Y 279 N sing Y 280 N sing N 281 N sing Y 282 N doub N 283 N sing Y 284 N doub N 285 N sing Y 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N doub Y 401 N sing Y 402 N sing N 403 N sing Y 404 N sing Y 405 N doub N 406 N sing Y 407 N doub N 408 N sing Y 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N doub N 429 N sing Y 430 N doub N 431 N sing Y 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 4573 4578 10.1073/pnas.080508097 10781062 The crystal structure of palmitoyl protein thioesterase 1 and the molecular basis of infantile neuronal ceroid lipofuscinosis. 2000 UK Nature NATUAS 0006 0028-0836 376 584 587 10.1038/376584a0 Mutations in the Palmitoyl Protein Thioesterase Gene Causing Infantile Neuronal Ceroid Lipofuscinosis 1995 US J.Biol.Chem. JBCHA3 0071 0021-9258 268 22566 22574 Purification and Properties of a Palmitoyl Protein Thioesterase that Cleaves Palmitate from H-Ras 1993 10.2210/pdb1eh5/pdb pdb_00001eh5 NAG B 1 HAS WRONG CHIRALITY AT ATOM C1 NAG A 400 HAS WRONG CHIRALITY AT ATOM C1 NAG A 410 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 1999-03-06 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0088 1.0 14-BM-D APS 1.0088 SYNCHROTRON APS BEAMLINE 14-BM-D 31447.111 PALMITOYL PROTEIN THIOESTERASE 1 3.1.2.22 1 man polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 2 man non-polymer 256.424 PALMITIC ACID 1 syn non-polymer 18.015 water 36 nat water no no DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos fall armyworm Spodoptera sample 10 L BIOREACTOR 9913 Bos taurus SF21 CELLS 7108 Spodoptera frugiperda 1 2.041 39.79 VAPOR DIFFUSION, SITTING DROP 6.5 55% Polypropylene Glycol 400, 100 mM Bis-Tris pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 20.0K 293.0 software citation_author citation_author exptl_crystal_grow exptl_crystal_grow atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_entry_details pdbx_modification_feature repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Refinement description Database references Database references Experimental preparation Experimental preparation Advisory Atomic model Data collection Derived calculations Non-polymer description Structure summary Data collection Database references Refinement description Structure summary Structure summary 1 0 2000-04-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2018-01-24 1 5 2018-01-31 1 6 2018-02-28 2 0 2020-07-29 2 1 2023-08-09 2 2 2024-10-16 _software.name _citation_author.name _citation_author.name _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_entry_details.has_protein_modification NAG 420 n B NAG 1 NAG 421 n B NAG 2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Crystal structure of Palmitoyl Protein Thioesterase 1 RCSB Y RCSB 2000-02-18 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose PLM PALMITIC ACID HOH water Asn197, Asn212 and Asn232 are glycosylated. The OG of Ser115 is covalently modified by palmitate. Y 1EI9 1ei9 (uncomplexed ppt1) PDB experimental model B NAG 1 Carbohydrate C1 B NAG A ASN 232 ASN ND2 A ASN 205 1_555 NAG 1 1_555 N-Glycosylation A NAG 400 Carbohydrate C1 C NAG A ASN 197 ASN ND2 A ASN 170 1_555 NAG 1 1_555 N-Glycosylation A NAG 410 Carbohydrate C1 D NAG A ASN 212 ASN ND2 A ASN 185 1_555 NAG 1 1_555 N-Glycosylation A PLM 430 Lipid/lipid-like C1 E PLM A SER 115 SER OG A SER 88 1_555 PLM 4 1_555 Palmitoylation A CYS 45 Disulfide bridge SG A CYS 18 A CYS 46 SG A CYS 19 1_555 1_555 None A CYS 96 Disulfide bridge SG A CYS 69 A CYS 128 SG A CYS 101 1_555 1_555 None A CYS 152 Disulfide bridge SG A CYS 125 A CYS 160 SG A CYS 133 1_555 1_555 None NAG 400 3 NAG NAG 400 A NAG 410 3 NAG NAG 410 A PLM 430 4 PLM PLM 430 A WAT 500 5 HOH HOH 500 A WAT 501 5 HOH HOH 501 A WAT 502 5 HOH HOH 502 A WAT 503 5 HOH HOH 503 A WAT 504 5 HOH HOH 504 A WAT 505 5 HOH HOH 505 A WAT 506 5 HOH HOH 506 A WAT 507 5 HOH HOH 507 A WAT 508 5 HOH HOH 508 A WAT 509 5 HOH HOH 509 A WAT 510 5 HOH HOH 510 A WAT 511 5 HOH HOH 511 A WAT 512 5 HOH HOH 512 A WAT 513 5 HOH HOH 513 A WAT 514 5 HOH HOH 514 A WAT 515 5 HOH HOH 515 A WAT 516 5 HOH HOH 516 A WAT 517 5 HOH HOH 517 A WAT 518 5 HOH HOH 518 A WAT 519 5 HOH HOH 519 A WAT 520 5 HOH HOH 520 A WAT 521 5 HOH HOH 521 A WAT 522 5 HOH HOH 522 A WAT 523 5 HOH HOH 523 A WAT 524 5 HOH HOH 524 A WAT 525 5 HOH HOH 525 A WAT 526 5 HOH HOH 526 A WAT 527 5 HOH HOH 527 A WAT 528 5 HOH HOH 528 A WAT 529 5 HOH HOH 529 A WAT 530 5 HOH HOH 530 A WAT 531 5 HOH HOH 531 A WAT 532 5 HOH HOH 532 A WAT 533 5 HOH HOH 533 A WAT 534 5 HOH HOH 534 A WAT 535 5 HOH HOH 535 A ASP 28 n 1 ASP 28 A PRO 29 n 2 PRO 29 A PRO 30 n 3 PRO 30 A ALA 31 n 4 ALA 31 A PRO 32 n 5 PRO 32 A LEU 33 n 6 LEU 33 A PRO 34 n 7 PRO 34 A LEU 35 n 8 LEU 35 A VAL 36 n 9 VAL 36 A ILE 37 n 10 ILE 37 A TRP 38 n 11 TRP 38 A HIS 39 n 12 HIS 39 A GLY 40 n 13 GLY 40 A MET 41 n 14 MET 41 A GLY 42 n 15 GLY 42 A ASP 43 n 16 ASP 43 A SER 44 n 17 SER 44 A CYS 45 n 18 CYS 45 A CYS 46 n 19 CYS 46 A ASN 47 n 20 ASN 47 A PRO 48 n 21 PRO 48 A LEU 49 n 22 LEU 49 A SER 50 n 23 SER 50 A MET 51 n 24 MET 51 A GLY 52 n 25 GLY 52 A ALA 53 n 26 ALA 53 A ILE 54 n 27 ILE 54 A LYS 55 n 28 LYS 55 A LYS 56 n 29 LYS 56 A MET 57 n 30 MET 57 A VAL 58 n 31 VAL 58 A GLU 59 n 32 GLU 59 A LYS 60 n 33 LYS 60 A LYS 61 n 34 LYS 61 A ILE 62 n 35 ILE 62 A PRO 63 n 36 PRO 63 A GLY 64 n 37 GLY 64 A ILE 65 n 38 ILE 65 A HIS 66 n 39 HIS 66 A VAL 67 n 40 VAL 67 A LEU 68 n 41 LEU 68 A SER 69 n 42 SER 69 A LEU 70 n 43 LEU 70 A GLU 71 n 44 GLU 71 A ILE 72 n 45 ILE 72 A GLY 73 n 46 GLY 73 A LYS 74 n 47 LYS 74 A THR 75 n 48 THR 75 A LEU 76 n 49 LEU 76 A ARG 77 n 50 ARG 77 A GLU 78 n 51 GLU 78 A ASP 79 n 52 ASP 79 A VAL 80 n 53 VAL 80 A GLU 81 n 54 GLU 81 A ASN 82 n 55 ASN 82 A SER 83 n 56 SER 83 A PHE 84 n 57 PHE 84 A PHE 85 n 58 PHE 85 A LEU 86 n 59 LEU 86 A ASN 87 n 60 ASN 87 A VAL 88 n 61 VAL 88 A ASN 89 n 62 ASN 89 A SER 90 n 63 SER 90 A GLN 91 n 64 GLN 91 A VAL 92 n 65 VAL 92 A THR 93 n 66 THR 93 A THR 94 n 67 THR 94 A VAL 95 n 68 VAL 95 A CYS 96 n 69 CYS 96 A GLN 97 n 70 GLN 97 A ILE 98 n 71 ILE 98 A LEU 99 n 72 LEU 99 A ALA 100 n 73 ALA 100 A LYS 101 n 74 LYS 101 A ASP 102 n 75 ASP 102 A PRO 103 n 76 PRO 103 A LYS 104 n 77 LYS 104 A LEU 105 n 78 LEU 105 A GLN 106 n 79 GLN 106 A GLN 107 n 80 GLN 107 A GLY 108 n 81 GLY 108 A TYR 109 n 82 TYR 109 A ASN 110 n 83 ASN 110 A ALA 111 n 84 ALA 111 A MET 112 n 85 MET 112 A GLY 113 n 86 GLY 113 A PHE 114 n 87 PHE 114 A SER 115 n 88 SER 115 A GLN 116 n 89 GLN 116 A GLY 117 n 90 GLY 117 A GLY 118 n 91 GLY 118 A GLN 119 n 92 GLN 119 A PHE 120 n 93 PHE 120 A LEU 121 n 94 LEU 121 A ARG 122 n 95 ARG 122 A ALA 123 n 96 ALA 123 A VAL 124 n 97 VAL 124 A ALA 125 n 98 ALA 125 A GLN 126 n 99 GLN 126 A ARG 127 n 100 ARG 127 A CYS 128 n 101 CYS 128 A PRO 129 n 102 PRO 129 A SER 130 n 103 SER 130 A PRO 131 n 104 PRO 131 A PRO 132 n 105 PRO 132 A MET 133 n 106 MET 133 A VAL 134 n 107 VAL 134 A ASN 135 n 108 ASN 135 A LEU 136 n 109 LEU 136 A ILE 137 n 110 ILE 137 A SER 138 n 111 SER 138 A VAL 139 n 112 VAL 139 A GLY 140 n 113 GLY 140 A GLY 141 n 114 GLY 141 A GLN 142 n 115 GLN 142 A HIS 143 n 116 HIS 143 A GLN 144 n 117 GLN 144 A GLY 145 n 118 GLY 145 A VAL 146 n 119 VAL 146 A PHE 147 n 120 PHE 147 A GLY 148 n 121 GLY 148 A LEU 149 n 122 LEU 149 A PRO 150 n 123 PRO 150 A ARG 151 n 124 ARG 151 A CYS 152 n 125 CYS 152 A PRO 153 n 126 PRO 153 A GLY 154 n 127 GLY 154 A GLU 155 n 128 GLU 155 A SER 156 n 129 SER 156 A SER 157 n 130 SER 157 A HIS 158 n 131 HIS 158 A ILE 159 n 132 ILE 159 A CYS 160 n 133 CYS 160 A ASP 161 n 134 ASP 161 A PHE 162 n 135 PHE 162 A ILE 163 n 136 ILE 163 A ARG 164 n 137 ARG 164 A LYS 165 n 138 LYS 165 A THR 166 n 139 THR 166 A LEU 167 n 140 LEU 167 A ASN 168 n 141 ASN 168 A ALA 169 n 142 ALA 169 A GLY 170 n 143 GLY 170 A ALA 171 n 144 ALA 171 A TYR 172 n 145 TYR 172 A ASN 173 n 146 ASN 173 A LYS 174 n 147 LYS 174 A ALA 175 n 148 ALA 175 A ILE 176 n 149 ILE 176 A GLN 177 n 150 GLN 177 A GLU 178 n 151 GLU 178 A ARG 179 n 152 ARG 179 A LEU 180 n 153 LEU 180 A VAL 181 n 154 VAL 181 A GLN 182 n 155 GLN 182 A ALA 183 n 156 ALA 183 A GLU 184 n 157 GLU 184 A TYR 185 n 158 TYR 185 A TRP 186 n 159 TRP 186 A HIS 187 n 160 HIS 187 A ASP 188 n 161 ASP 188 A PRO 189 n 162 PRO 189 A ILE 190 n 163 ILE 190 A ARG 191 n 164 ARG 191 A GLU 192 n 165 GLU 192 A ASP 193 n 166 ASP 193 A ILE 194 n 167 ILE 194 A TYR 195 n 168 TYR 195 A ARG 196 n 169 ARG 196 A ASN 197 n 170 ASN 197 A HIS 198 n 171 HIS 198 A SER 199 n 172 SER 199 A ILE 200 n 173 ILE 200 A PHE 201 n 174 PHE 201 A LEU 202 n 175 LEU 202 A ALA 203 n 176 ALA 203 A ASP 204 n 177 ASP 204 A ILE 205 n 178 ILE 205 A ASN 206 n 179 ASN 206 A GLN 207 n 180 GLN 207 A GLU 208 n 181 GLU 208 A ARG 209 n 182 ARG 209 A GLY 210 n 183 GLY 210 A VAL 211 n 184 VAL 211 A ASN 212 n 185 ASN 212 A GLU 213 n 186 GLU 213 A SER 214 n 187 SER 214 A TYR 215 n 188 TYR 215 A LYS 216 n 189 LYS 216 A LYS 217 n 190 LYS 217 A ASN 218 n 191 ASN 218 A LEU 219 n 192 LEU 219 A MET 220 n 193 MET 220 A ALA 221 n 194 ALA 221 A LEU 222 n 195 LEU 222 A LYS 223 n 196 LYS 223 A LYS 224 n 197 LYS 224 A PHE 225 n 198 PHE 225 A VAL 226 n 199 VAL 226 A MET 227 n 200 MET 227 A VAL 228 n 201 VAL 228 A LYS 229 n 202 LYS 229 A PHE 230 n 203 PHE 230 A LEU 231 n 204 LEU 231 A ASN 232 n 205 ASN 232 A ASP 233 n 206 ASP 233 A THR 234 n 207 THR 234 A ILE 235 n 208 ILE 235 A VAL 236 n 209 VAL 236 A ASP 237 n 210 ASP 237 A PRO 238 n 211 PRO 238 A VAL 239 n 212 VAL 239 A ASP 240 n 213 ASP 240 A SER 241 n 214 SER 241 A GLU 242 n 215 GLU 242 A TRP 243 n 216 TRP 243 A PHE 244 n 217 PHE 244 A GLY 245 n 218 GLY 245 A PHE 246 n 219 PHE 246 A TYR 247 n 220 TYR 247 A ARG 248 n 221 ARG 248 A SER 249 n 222 SER 249 A GLY 250 n 223 GLY 250 A GLN 251 n 224 GLN 251 A ALA 252 n 225 ALA 252 A LYS 253 n 226 LYS 253 A GLU 254 n 227 GLU 254 A THR 255 n 228 THR 255 A ILE 256 n 229 ILE 256 A PRO 257 n 230 PRO 257 A LEU 258 n 231 LEU 258 A GLN 259 n 232 GLN 259 A GLU 260 n 233 GLU 260 A SER 261 n 234 SER 261 A THR 262 n 235 THR 262 A LEU 263 n 236 LEU 263 A TYR 264 n 237 TYR 264 A THR 265 n 238 THR 265 A GLN 266 n 239 GLN 266 A ASP 267 n 240 ASP 267 A ARG 268 n 241 ARG 268 A LEU 269 n 242 LEU 269 A GLY 270 n 243 GLY 270 A LEU 271 n 244 LEU 271 A LYS 272 n 245 LYS 272 A ALA 273 n 246 ALA 273 A MET 274 n 247 MET 274 A ASP 275 n 248 ASP 275 A LYS 276 n 249 LYS 276 A ALA 277 n 250 ALA 277 A GLY 278 n 251 GLY 278 A GLN 279 n 252 GLN 279 A LEU 280 n 253 LEU 280 A VAL 281 n 254 VAL 281 A PHE 282 n 255 PHE 282 A LEU 283 n 256 LEU 283 A ALA 284 n 257 ALA 284 A LEU 285 n 258 LEU 285 A GLU 286 n 259 GLU 286 A GLY 287 n 260 GLY 287 A ASP 288 n 261 ASP 288 A HIS 289 n 262 HIS 289 A LEU 290 n 263 LEU 290 A GLN 291 n 264 GLN 291 A LEU 292 n 265 LEU 292 A SER 293 n 266 SER 293 A GLU 294 n 267 GLU 294 A GLU 295 n 268 GLU 295 A TRP 296 n 269 TRP 296 A PHE 297 n 270 PHE 297 A TYR 298 n 271 TYR 298 A ALA 299 n 272 ALA 299 A HIS 300 n 273 HIS 300 A ILE 301 n 274 ILE 301 A ILE 302 n 275 ILE 302 A PRO 303 n 276 PRO 303 A PHE 304 n 277 PHE 304 A LEU 305 n 278 LEU 305 A GLU 306 n 279 GLU 306 A author_defined_assembly 1 monomeric A ASN 197 GLYCOSYLATION SITE A ASN 170 ASN A ASN 232 GLYCOSYLATION SITE A ASN 205 ASN A ASN 212 GLYCOSYLATION SITE A ASN 185 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 68 A N LEU 41 A O LEU 35 A O LEU 8 A N VAL 36 A N VAL 9 A O ASN 110 A O ASN 83 A O TYR 109 A O TYR 82 A N VAL 134 A N VAL 107 A N LEU 136 A N LEU 109 A O LYS 224 A O LYS 197 A N MET 227 A N MET 200 A O VAL 281 A O VAL 254 A O PHE 246 A O PHE 219 A N ILE 256 A N ILE 229 1 B C1 NAG 1 WRONG HAND 1 A C1 NAG 400 WRONG HAND 1 A C1 NAG 410 WRONG HAND 1 A PRO 30 -42.00 -75.52 1 A ALA 31 -25.51 -54.46 1 A SER 50 -97.10 -78.93 1 A SER 115 57.69 -125.69 1 A VAL 134 -103.09 -79.04 1 A PHE 147 -151.26 74.78 1 A LEU 167 -130.27 -32.40 1 A ALA 171 -48.52 -18.88 1 A ILE 190 -71.67 -78.75 1 A PHE 201 -125.58 -75.38 1 A GLU 295 -43.53 -70.93 protein_rep.param protein.top carbohydrate.param water.top water_rep.param carbohydrate.top 31.80 0.00 0.00 0.00 0.00 0.00 0.00 Used simulated annealing, energy minimization, individual B-factor refinement. Used isotropic B-factor correction and bulk solvent correction. 0.27 0.012 0.2262 0.2337 0.2337 2.50 20.0 512 10900 10620 4.8 97.4 Random 1390208.41 1 THROUGHOUT 0.00 0.00 difference fourier 1ei9 (uncomplexed ppt1) Generated parameter/topology files for palmitate with XPLO2D flat model 49.5058 0.34248 0.42 0.34 5.00 0.39 0.33 2.50 20.0 36 2319 73 0 2210 1.4 0.008 23.1 0.83 2.09 1.50 3.36 2.00 1.80 2.00 3.04 2.50 0.374 0.039 0.318 2.66 92 1628 5.3 97.9 43.8 2.500 21.064 1EH5 47325 46474 0.0 0.0 0.148 1 10.1 4.4 98.2 0.362 2.50 2.64 1507 1 4.2 97.8 data reduction MOSFLM data scaling SCALA data reduction TRUNCATE refinement CNS data scaling CCP4 (SCALA data scaling TRUNCATE phasing CNS CRYSTAL STRUCTURE OF PALMITOYL PROTEIN THIOESTERASE 1 COMPLEXED WITH PALMITATE 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N A SER 50 A SER 23 HELX_P A ILE 62 A ILE 35 1 1 13 A THR 75 A THR 48 HELX_P A LEU 86 A LEU 59 1 2 12 A ASN 87 A ASN 60 HELX_P A LYS 101 A LYS 74 1 3 15 A ASP 102 A ASP 75 HELX_P A GLN 106 A GLN 79 5 4 5 A GLN 116 A GLN 89 HELX_P A CYS 128 A CYS 101 1 5 13 A SER 157 A SER 130 HELX_P A THR 166 A THR 139 1 6 10 A ASN 173 A ASN 146 HELX_P A GLU 178 A GLU 151 1 7 6 A VAL 181 A VAL 154 HELX_P A TYR 185 A TYR 158 5 8 5 A ARG 191 A ARG 164 HELX_P A SER 199 A SER 172 1 9 9 A PHE 201 A PHE 174 HELX_P A ASN 206 A ASN 179 1 10 6 A ASN 212 A ASN 185 HELX_P A ALA 221 A ALA 194 1 11 10 A PRO 238 A PRO 211 HELX_P A PHE 244 A PHE 217 5 12 7 A PRO 257 A PRO 230 HELX_P A GLU 260 A GLU 233 5 13 4 A SER 261 A SER 234 HELX_P A GLN 266 A GLN 239 1 14 6 A GLY 270 A GLY 243 HELX_P A ALA 277 A ALA 250 1 15 8 A SER 293 A SER 266 HELX_P A ILE 301 A ILE 274 1 16 9 A ILE 301 A ILE 274 HELX_P A GLU 306 A GLU 279 1 17 6 disulf 2.051 A CYS 45 A SG CYS 18 1_555 A CYS 46 A SG CYS 19 1_555 disulf 2.041 A CYS 96 A SG CYS 69 1_555 A CYS 128 A SG CYS 101 1_555 disulf 2.040 A CYS 152 A SG CYS 125 1_555 A CYS 160 A SG CYS 133 1_555 covale 1.284 one A SER 115 A OG SER 88 1_555 A PLM 430 E C1 PLM 1_555 covale 1.451 one N-Glycosylation A ASN 197 A ND2 ASN 170 1_555 A NAG 400 C C1 NAG 1_555 covale 1.453 one N-Glycosylation A ASN 212 A ND2 ASN 185 1_555 A NAG 410 D C1 NAG 1_555 covale 1.452 one N-Glycosylation A ASN 232 A ND2 ASN 205 1_555 B NAG 1 B C1 NAG 1_555 covale 1.393 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 HYDROLASE ALPHA/BETA HYDROLASE, GLYCOPROTEIN, HYDROLASE A SER 130 A SER 103 1 A PRO 131 A PRO 104 -0.39 A ASP 237 A ASP 210 1 A PRO 238 A PRO 211 0.32 PPT_BOVIN UNP 1 28 P45478 DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 28 306 1EH5 28 306 P45478 A 1 1 279 6 2 parallel parallel parallel parallel parallel anti-parallel A VAL 67 A VAL 40 A SER 69 A SER 42 A LEU 35 A LEU 8 A TRP 38 A TRP 11 A TYR 109 A TYR 82 A PHE 114 A PHE 87 A MET 133 A MET 106 A VAL 139 A VAL 112 A LYS 224 A LYS 197 A PHE 230 A PHE 203 A LEU 280 A LEU 253 A LEU 285 A LEU 258 A PHE 246 A PHE 219 A TYR 247 A TYR 220 A THR 255 A THR 228 A ILE 256 A ILE 229 91 P 41 2 2