1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Keniry, M.A. Owen, E.A. Shafer, R.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C6 H12 O4 148.157 beta-D-Olivopyranose beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE D-saccharide, beta linking C6 H12 O4 148.157 2,6-dideoxy-beta-D-galactopyranose 2,6-DIDEOXY-BETA-D-GALACTOSE; 2,6-DIDEOXY-BETA-D-TALOSE; 2,6-dideoxy-beta-D-lyxo-hexopyranose; 2-deoxy-beta-D-fucopyranose; 2,6-dideoxy-D-galactose; 2,6-dideoxy-galactose D-saccharide, beta linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C21 H24 O7 388.411 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE non-polymer C7 H14 O4 162.184 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose 2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE; 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-ribo-hexose D-saccharide, beta linking Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 R C N 72 N C N 73 R C N 74 S C N 75 R C N 76 N C N 77 N O N 78 N O N 79 N O N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 R C N 94 N C N 95 R C N 96 R C N 97 R C N 98 N C N 99 N O N 100 N O N 101 N O N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N O N 116 N P N 117 N O N 118 N O N 119 N O N 120 N C N 121 R C N 122 N O N 123 S C N 124 N O N 125 N C N 126 R C Y 127 N N Y 128 N C Y 129 N N Y 130 N C N 131 N C N 132 N O N 133 N N N 134 N C N 135 N N N 136 N N Y 137 N C N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N O N 153 N P N 154 N O N 155 N O N 156 N O N 157 N C N 158 R C N 159 N O N 160 S C N 161 N O N 162 N C N 163 R C N 164 N N N 165 N C N 166 N O N 167 N N N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N C N 189 N O Y 190 N C N 191 N C N 192 R C N 193 N C Y 194 N C Y 195 N C Y 196 N C Y 197 N C Y 198 N C Y 199 N C N 200 N C Y 201 N C N 202 N O Y 203 N C Y 204 N C N 205 N O N 206 N C N 207 S C N 208 N O N 209 N C N 210 N O N 211 S C N 212 N O N 213 S C N 214 N O N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 R C N 241 N C N 242 S C N 243 R C N 244 R C N 245 N C N 246 N C N 247 N O N 248 N O N 249 N O N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing Y 141 N sing Y 142 N sing Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing Y 147 N doub N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing Y 197 N doub Y 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing Y 208 N sing Y 209 N doub N 210 N sing Y 211 N sing Y 212 N sing Y 213 N doub N 214 N sing Y 215 N sing N 216 N sing N 217 N sing Y 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing Y 223 N sing N 224 N sing Y 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing US Biopolymers BIPMAA 0161 0006-3525 54 104 114 10.1002/1097-0282(200008)54:2<104::AID-BIP3>3.0.CO;2-2 10861371 The three-dimensional structure of the 4:1 mithramycin:d(ACCCGGGT)2 complex: evidence for an interaction between the E saccharides 2000 10.2210/pdb1bp8/pdb pdb_00001bp8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 FOUR MOLECULES OF MITHRAMYCIN (PLICAMYCIN) (RESIDUES DDA-DDA-DXB-DDA-DDL-DDB, CHAINS C, D, E, F) BOUND IN THE MINOR GROOVE. Oxygens of the MITHRAMYCIN chromophore (residue DXB) are complexed with Mg++ 2427.605 5'-D(*AP*CP*CP*CP*GP*GP*GP*T)-3' 2 syn polymer 278.299 beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose 4 man branched 422.468 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose 4 syn branched 24.305 MAGNESIUM ION 2 syn non-polymer 388.411 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE 4 syn non-polymer no no (DA)(DC)(DC)(DC)(DG)(DG)(DG)(DT) ACCCGGGT A,B polydeoxyribonucleotide n n n n n n n n -5.896 1 20 A 1 B 8 -22.361 A_DA1:DT8_B 1 -8.404 -0.422 1.216 -0.313 -1.342 1 19 A 2 B 7 4.791 A_DC2:DG7_B 2 8.824 -0.264 0.912 -0.163 -4.274 1 19 A 3 B 6 6.749 A_DC3:DG6_B 3 -24.129 0.376 -0.098 -0.124 -18.689 1 19 A 4 B 5 2.274 A_DC4:DG5_B 4 7.135 0.501 0.481 -0.002 19.615 1 19 A 5 B 4 3.142 A_DG5:DC4_B 5 -0.427 -0.472 0.515 0.019 5.670 1 19 A 6 B 3 5.755 A_DG6:DC3_B 6 -21.658 -0.254 0.000 -0.081 1.430 1 19 A 7 B 2 3.766 A_DG7:DC2_B 7 7.320 0.339 0.950 -0.193 5.703 1 20 A 8 B 1 -20.935 A_DT8:DA1_B 8 -4.486 0.211 1.344 -0.243 3.258 36.169 A A 1 2 6.643 B B 8 7 3.256 4.105 1.626 -1.457 AA_DA1DC2:DG7DT8_BB 1 4.797 -7.764 35.632 -2.927 -1.941 2.714 38.261 A A 2 3 14.767 B B 7 6 3.017 9.419 0.130 -0.426 AA_DC2DC3:DG6DG7_BB 2 12.328 -19.327 35.082 -1.735 1.223 3.242 34.574 A A 3 4 15.077 B B 6 5 3.529 8.827 -0.334 -0.741 AA_DC3DC4:DG5DG6_BB 3 -5.699 9.734 32.985 -2.692 -0.373 2.229 25.798 A A 4 5 2.148 B B 5 4 2.246 0.959 0.194 -0.496 AA_DC4DG5:DC4DG5_BB 4 0.365 -0.818 25.778 -1.294 -0.365 3.211 36.569 A A 5 6 12.651 B B 4 3 3.446 7.857 0.220 -0.763 AA_DG5DG6:DC3DC4_BB 5 4.894 -7.879 35.417 -2.336 0.348 2.685 38.268 A A 6 7 17.427 B B 3 2 3.033 11.106 -0.116 -0.457 AA_DG6DG7:DC2DC3_BB 6 -11.248 17.649 34.963 -1.976 -1.119 3.038 34.085 A A 7 8 13.849 B B 2 1 3.310 8.022 -1.531 -1.550 AA_DG7DT8:DA1DC2_BB 7 -4.577 7.902 32.845 -3.906 1.892 atom_site ndb_struct_conf_na pdbx_struct_assembly pdbx_struct_assembly_prop pdbx_struct_oper_list struct_conn atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 struct_conn repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Atomic model Data collection Derived calculations Atomic model Data collection Derived calculations Structure summary Data collection Database references Derived calculations Structure summary 1 0 1999-08-16 1 1 2008-04-27 1 2 2011-07-13 2 0 2019-10-02 3 0 2020-07-29 3 1 2023-12-27 _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_value_order _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag DDA 1 n C DDA 1 DDA 1 n C DDA 2 DDA 1 n D DDA 1 DDA 1 n D DDL 2 DDA 1 n D MDA 3 DDA 9 n E DDA 1 DDA 9 n E DDA 2 DDA 9 n F DDA 1 DDA 9 n F DDL 2 DDA 9 n F MDA 3 DDA 2 n G DDA 1 DDA 2 n G DDL 2 DDA 2 n G MDA 3 DDA 2 n H DDA 1 DDA 2 n H DDA 2 DDA 1 n I DDA 1 DDA 1 n I DDA 2 DDA 1 n J DDA 1 DDA 1 n J DDL 2 DDA 1 n J MDA 3 DOlib b-D-Olivopyranose b-D-2,6-deoxy-Glcp Oli b-D-2-deoxy-Fucp N BNL Y RCSB 1998-08-13 REL REL oligosaccharide oligosaccharide DOlib1-3DOlib1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[ad122m-1b_1-5]/1-1/a3-b1 2 PDB2Glycan 1.1.0 WURCS [][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{}} 2 PDB-CARE LINUCS WURCS=2.0/3,3,2/[ad122m-1b_1-5][ad112m-1b_1-5][ad622m-1b_1-5_3*C]/1-2-3/a3-b1_b3-c1 3 PDB2Glycan 1.1.0 WURCS [][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Allp]{}}} 3 PDB-CARE LINUCS C1 O3 DDA DDA 2 1 2 O1 HO3 sing C1 O3 DDL DDA 2 1 3 O1 HO3 sing C1 O3 MDA DDL 3 2 3 O1 HO3 sing n n n n n MG MAGNESIUM ION DXB 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR TWO DIMENSIONAL NMR SPECTROSCOPY 7 1 NOESY PCOSY TOCSY 7.2 1 atm 293 K REFINEMENT DETAILS CAN BE FOUND IN THE JOURNAL CITATION ABOVE FULL RELAXATION MATRIX ANALYSIS AND RESTRAINED MOLECULAR DYNAMICS MSI, WALTHAM , MA refinement CHARMM 23.2 structure solution VNMR structure solution MARDIGRAS structure solution CORMA CHARMM CHARMM 600 Varian INOVA 600 MG 1 4 MG MG 17 A MG 9 4 MG MG 18 A DXB 1 5 DXB DXB 21 A DXB 9 5 DXB DXB 22 A DXB 2 5 DXB DXB 19 B DXB 1 5 DXB DXB 20 B A 1 n 1 DA 1 A C 2 n 2 DC 2 A C 3 n 3 DC 3 A C 4 n 4 DC 4 A G 5 n 5 DG 5 A G 6 n 6 DG 6 A G 7 n 7 DG 7 A T 8 n 8 DT 8 A A 1 n 1 DA 1 B C 2 n 2 DC 2 B C 3 n 3 DC 3 B C 4 n 4 DC 4 B G 5 n 5 DG 5 B G 6 n 6 DG 6 B G 7 n 7 DG 7 B T 8 n 8 DT 8 B author_defined_assembly 2 dimeric 9960 125 1860 A DXB 21 M O9 DXB 1_555 A MG 17 K MG MG 1_555 A DXB 21 M O1 DXB 1_555 83.4 A DXB 21 M O9 DXB 1_555 A MG 17 K MG MG 1_555 B DXB 19 O O9 DXB 1_555 174.1 A DXB 21 M O1 DXB 1_555 A MG 17 K MG MG 1_555 B DXB 19 O O9 DXB 1_555 97.6 A DXB 21 M O9 DXB 1_555 A MG 17 K MG MG 1_555 B DXB 19 O O1 DXB 1_555 111.0 A DXB 21 M O1 DXB 1_555 A MG 17 K MG MG 1_555 B DXB 19 O O1 DXB 1_555 84.9 B DXB 19 O O9 DXB 1_555 A MG 17 K MG MG 1_555 B DXB 19 O O1 DXB 1_555 74.9 A DXB 22 N O9 DXB 1_555 A MG 18 L MG MG 1_555 A DXB 22 N O1 DXB 1_555 74.4 A DXB 22 N O9 DXB 1_555 A MG 18 L MG MG 1_555 B DXB 20 P O1 DXB 1_555 95.7 A DXB 22 N O1 DXB 1_555 A MG 18 L MG MG 1_555 B DXB 20 P O1 DXB 1_555 89.0 A DXB 22 N O9 DXB 1_555 A MG 18 L MG MG 1_555 B DXB 20 P O9 DXB 1_555 177.6 A DXB 22 N O1 DXB 1_555 A MG 18 L MG MG 1_555 B DXB 20 P O9 DXB 1_555 104.2 B DXB 20 P O1 DXB 1_555 A MG 18 L MG MG 1_555 B DXB 20 P O9 DXB 1_555 86.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 3 0.071 SIDE CHAIN 1 A DG 6 0.068 SIDE CHAIN 1 B DC 3 0.076 SIDE CHAIN 1 B DG 6 0.067 SIDE CHAIN 1 -3.67 0.50 129.30 125.63 A A A N1 C2 N3 DA DA DA 1 1 1 N 1 4.39 0.50 110.60 114.99 A A A C2 N3 C4 DA DA DA 1 1 1 N 1 4.86 0.50 117.70 122.56 A A A C5 C6 N1 DA DA DA 1 1 1 N 1 4.43 0.70 132.30 136.73 A A A C6 C5 N7 DA DA DA 1 1 1 N 1 9.39 1.10 109.80 119.19 A A A C5' C4' O4' DC DC DC 2 2 2 N 1 3.06 0.30 108.30 111.36 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 -4.74 0.70 119.20 114.46 A A A N1 C2 N3 DC DC DC 2 2 2 N 1 8.51 0.60 118.90 127.41 A A A N1 C2 O2 DC DC DC 2 2 2 N 1 -2.78 0.40 104.50 101.72 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 12.12 1.10 109.80 121.92 A A A C5' C4' O4' DC DC DC 3 3 3 N 1 3.36 0.30 108.30 111.66 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 4.15 0.60 118.90 123.05 A A A N1 C2 O2 DC DC DC 3 3 3 N 1 3.06 0.30 108.30 111.36 A A A O4' C1' N1 DC DC DC 4 4 4 N 1 4.45 0.60 118.90 123.35 A A A N1 C2 O2 DC DC DC 4 4 4 N 1 -3.82 0.50 128.60 124.78 A A A N3 C4 C5 DG DG DG 5 5 5 N 1 -2.40 0.40 110.80 108.40 A A A C4 C5 N7 DG DG DG 5 5 5 N 1 3.88 0.60 130.40 134.28 A A A C6 C5 N7 DG DG DG 5 5 5 N 1 -3.81 0.60 119.90 116.09 A A A N1 C6 O6 DG DG DG 5 5 5 N 1 12.69 1.40 114.30 126.99 A A A N9 C1' C2' DG DG DG 6 6 6 N 1 -4.05 0.50 128.60 124.55 A A A N3 C4 C5 DG DG DG 6 6 6 N 1 -2.68 0.40 110.80 108.12 A A A C4 C5 N7 DG DG DG 6 6 6 N 1 4.04 0.60 130.40 134.44 A A A C6 C5 N7 DG DG DG 6 6 6 N 1 -4.00 0.60 119.90 115.90 A A A N1 C6 O6 DG DG DG 6 6 6 N 1 2.63 0.30 108.30 110.93 A A A O4' C1' N9 DG DG DG 7 7 7 N 1 -3.75 0.50 128.60 124.85 A A A N3 C4 C5 DG DG DG 7 7 7 N 1 -2.80 0.40 110.80 108.00 A A A C4 C5 N7 DG DG DG 7 7 7 N 1 4.34 0.60 130.40 134.74 A A A C6 C5 N7 DG DG DG 7 7 7 N 1 -3.84 0.60 119.90 116.06 A A A N1 C6 O6 DG DG DG 7 7 7 N 1 8.27 0.90 103.10 111.37 A A A C4' C3' C2' DT DT DT 8 8 8 N 1 3.91 0.30 108.30 112.21 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 -3.52 0.50 129.30 125.78 B B B N1 C2 N3 DA DA DA 1 1 1 N 1 4.50 0.50 110.60 115.10 B B B C2 N3 C4 DA DA DA 1 1 1 N 1 4.85 0.50 117.70 122.55 B B B C5 C6 N1 DA DA DA 1 1 1 N 1 2.46 0.40 105.80 108.26 B B B N9 C4 C5 DA DA DA 1 1 1 N 1 4.98 0.70 132.30 137.28 B B B C6 C5 N7 DA DA DA 1 1 1 N 1 8.57 1.10 109.80 118.37 B B B C5' C4' O4' DC DC DC 2 2 2 N 1 2.20 0.30 108.30 110.50 B B B O4' C1' N1 DC DC DC 2 2 2 N 1 -4.61 0.70 119.20 114.59 B B B N1 C2 N3 DC DC DC 2 2 2 N 1 8.33 0.60 118.90 127.23 B B B N1 C2 O2 DC DC DC 2 2 2 N 1 8.05 1.10 109.80 117.85 B B B C5' C4' O4' DC DC DC 3 3 3 N 1 4.77 0.30 108.30 113.07 B B B O4' C1' N1 DC DC DC 3 3 3 N 1 3.73 0.30 108.30 112.03 B B B O4' C1' N1 DC DC DC 4 4 4 N 1 2.44 0.40 120.30 122.74 B B B C6 N1 C2 DC DC DC 4 4 4 N 1 4.31 0.60 118.90 123.21 B B B N1 C2 O2 DC DC DC 4 4 4 N 1 -4.21 0.50 128.60 124.39 B B B N3 C4 C5 DG DG DG 5 5 5 N 1 3.67 0.60 126.00 129.67 B B B N3 C4 N9 DG DG DG 5 5 5 N 1 -3.91 0.60 119.90 115.99 B B B N1 C6 O6 DG DG DG 5 5 5 N 1 12.07 1.40 114.30 126.37 B B B N9 C1' C2' DG DG DG 6 6 6 N 1 -4.18 0.50 128.60 124.42 B B B N3 C4 C5 DG DG DG 6 6 6 N 1 -2.55 0.40 110.80 108.25 B B B C4 C5 N7 DG DG DG 6 6 6 N 1 3.82 0.60 130.40 134.22 B B B C6 C5 N7 DG DG DG 6 6 6 N 1 -4.08 0.60 119.90 115.82 B B B N1 C6 O6 DG DG DG 6 6 6 N 1 -3.91 0.50 128.60 124.69 B B B N3 C4 C5 DG DG DG 7 7 7 N 1 -2.92 0.40 110.80 107.88 B B B C4 C5 N7 DG DG DG 7 7 7 N 1 4.52 0.60 130.40 134.92 B B B C6 C5 N7 DG DG DG 7 7 7 N 1 -4.27 0.60 119.90 115.63 B B B N1 C6 O6 DG DG DG 7 7 7 N 1 4.64 0.30 108.30 112.94 B B B O4' C1' N1 DT DT DT 8 8 8 N 1 A A O5' C5' DA DA 1 1 -0.642 0.025 1.418 0.776 N 1 A A C4 C5 DC DC 2 2 -0.060 0.008 1.425 1.365 N 1 A A C5' C4' DC DC 3 3 0.045 0.007 1.512 1.557 N 1 A A N1 C6 DC DC 3 3 -0.084 0.006 1.367 1.283 N 1 A A C4 C5 DC DC 3 3 -0.053 0.008 1.425 1.372 N 1 A A N1 C6 DC DC 4 4 -0.058 0.006 1.367 1.309 N 1 A A N1 C2 DG DG 5 5 -0.070 0.008 1.373 1.303 N 1 A A N7 C8 DG DG 5 5 0.045 0.006 1.305 1.350 N 1 A A C8 N9 DG DG 5 5 -0.068 0.007 1.374 1.306 N 1 A A N1 C2 DG DG 6 6 -0.077 0.008 1.373 1.296 N 1 A A N7 C8 DG DG 6 6 0.044 0.006 1.305 1.349 N 1 A A C8 N9 DG DG 6 6 -0.044 0.007 1.374 1.330 N 1 A A N1 C2 DG DG 7 7 -0.085 0.008 1.373 1.288 N 1 A A N7 C8 DG DG 7 7 0.040 0.006 1.305 1.345 N 1 A A C8 N9 DG DG 7 7 -0.049 0.007 1.374 1.325 N 1 A A C3' C2' DT DT 8 8 -0.179 0.008 1.516 1.337 N 1 A A O3' C3' DT DT 8 8 -0.221 0.006 1.419 1.198 N 1 A A C2 N3 DT DT 8 8 -0.051 0.008 1.373 1.322 N 1 A A N3 C4 DT DT 8 8 -0.050 0.008 1.382 1.332 N 1 A A C6 N1 DT DT 8 8 -0.064 0.007 1.378 1.314 N 1 B B C4 C5 DC DC 2 2 -0.062 0.008 1.425 1.363 N 1 B B C2' C1' DC DC 3 3 -0.062 0.010 1.518 1.456 N 1 B B N1 C6 DC DC 3 3 -0.074 0.006 1.367 1.293 N 1 B B C4 C5 DC DC 3 3 -0.053 0.008 1.425 1.372 N 1 B B N1 C6 DC DC 4 4 -0.059 0.006 1.367 1.308 N 1 B B N1 C2 DG DG 5 5 -0.070 0.008 1.373 1.303 N 1 B B N7 C8 DG DG 5 5 0.042 0.006 1.305 1.347 N 1 B B C8 N9 DG DG 5 5 -0.064 0.007 1.374 1.310 N 1 B B N1 C2 DG DG 6 6 -0.077 0.008 1.373 1.296 N 1 B B N7 C8 DG DG 6 6 0.043 0.006 1.305 1.348 N 1 B B C8 N9 DG DG 6 6 -0.046 0.007 1.374 1.328 N 1 B B N1 C2 DG DG 7 7 -0.089 0.008 1.373 1.284 N 1 B B N7 C8 DG DG 7 7 0.042 0.006 1.305 1.347 N 1 B B C2 N3 DT DT 8 8 -0.058 0.008 1.373 1.315 N 1 B B C6 N1 DT DT 8 8 -0.067 0.007 1.378 1.311 N 4:2:1 mithramycin:Mg++:d(ACCCGGGT)2 complex 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 3 N N 2 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N covale 1.340 one A DXB 21 M C6 DXB 1_555 C DDA 1 C O1 DDA 1_555 covale 1.416 one A DXB 21 M C2 DXB 1_555 D DDA 1 D O1 DDA 1_555 covale 1.356 one A DXB 22 N C6 DXB 1_555 E DDA 1 E O1 DDA 1_555 covale 1.431 one A DXB 22 N C2 DXB 1_555 F DDA 1 F O1 DDA 1_555 covale 1.426 one B DXB 19 O C2 DXB 1_555 G DDA 1 G O1 DDA 1_555 covale 1.356 one B DXB 19 O C6 DXB 1_555 H DDA 1 H O1 DDA 1_555 covale 1.345 one B DXB 20 P C6 DXB 1_555 I DDA 1 I O1 DDA 1_555 covale 1.412 one B DXB 20 P C2 DXB 1_555 J DDA 1 J O1 DDA 1_555 covale 1.386 both C DDA 1 C O3 DDA 1_555 C DDA 2 C C1 DDA 1_555 covale 1.400 both sing D DDA 1 D O3 DDA 1_555 D DDL 2 D C1 DDL 1_555 covale 1.414 both sing D DDL 2 D O3 DDL 1_555 D MDA 3 D C1 MDA 1_555 covale 1.353 both E DDA 1 E O3 DDA 1_555 E DDA 2 E C1 DDA 1_555 covale 1.410 both sing F DDA 1 F O3 DDA 1_555 F DDL 2 F C1 DDL 1_555 covale 1.424 both sing F DDL 2 F O3 DDL 1_555 F MDA 3 F C1 MDA 1_555 covale 1.410 both sing G DDA 1 G O3 DDA 1_555 G DDL 2 G C1 DDL 1_555 covale 1.432 both sing G DDL 2 G O3 DDL 1_555 G MDA 3 G C1 MDA 1_555 covale 1.402 both H DDA 1 H O3 DDA 1_555 H DDA 2 H C1 DDA 1_555 covale 1.404 both I DDA 1 I O3 DDA 1_555 I DDA 2 I C1 DDA 1_555 covale 1.398 both sing J DDA 1 J O3 DDA 1_555 J DDL 2 J C1 DDL 1_555 covale 1.414 both sing J DDL 2 J O3 DDL 1_555 J MDA 3 J C1 MDA 1_555 metalc 1.652 A MG 17 K MG MG 1_555 A DXB 21 M O9 DXB 1_555 metalc 2.133 A MG 17 K MG MG 1_555 A DXB 21 M O1 DXB 1_555 metalc 2.255 A MG 17 K MG MG 1_555 B DXB 19 O O9 DXB 1_555 metalc 2.072 A MG 17 K MG MG 1_555 B DXB 19 O O1 DXB 1_555 metalc 2.305 A MG 18 L MG MG 1_555 A DXB 22 N O9 DXB 1_555 metalc 2.031 A MG 18 L MG MG 1_555 A DXB 22 N O1 DXB 1_555 metalc 2.112 A MG 18 L MG MG 1_555 B DXB 20 P O1 DXB 1_555 metalc 1.657 A MG 18 L MG MG 1_555 B DXB 20 P O9 DXB 1_555 hydrog WATSON-CRICK A DA 1 A N1 DA 1 1_555 B DT 8 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 1 A N6 DA 1 1_555 B DT 8 B O4 DT 8 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 7 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 7 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 7 B N2 DG 7 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 6 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 6 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 6 B N2 DG 6 1_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 B DG 5 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 B DG 5 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 B DG 5 B N2 DG 5 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 4 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 4 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 4 B N4 DC 4 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 3 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 3 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 3 B N4 DC 3 1_555 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 B DC 2 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 B DC 2 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 B DC 2 B N4 DC 2 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 1 B N1 DA 1 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 1 B N6 DA 1 1_555 DNA MITHRAMYCIN, DNA, OLIGONUCLEOTIDE 1BP8 PDB 1 1BP8 1 8 1BP8 1 8 1BP8 A 1 1 8 1 8 1BP8 1 8 1BP8 B 1 1 8 1 P 1