7.21 9.402 20.159 22.575 A O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 5.99 9.725 21.188 23.423 A C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 5.78 11.126 21.146 23.863 A C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 5.82 11.377 19.997 24.733 A O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 5.66 12.207 21.038 22.712 A C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 5.19 13.306 21.799 23.058 A O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 5.84 12.501 19.515 22.662 A C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 5.27 12.455 19.165 24.213 A C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 4.80 11.986 17.751 24.326 A N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 4.51 12.962 16.785 24.455 A C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 5.08 14.150 17.068 24.490 A O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 4.65 12.526 15.500 24.568 A N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 4.96 11.215 15.091 24.512 A C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 4.91 10.903 13.757 24.529 A N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 4.61 10.240 16.122 24.369 A C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 4.55 10.650 17.373 24.236 A C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 6.74 13.887 22.924 22.131 A P DG 2 ATOM A P DG 1 2 1.00 1 P 6.96 14.896 23.692 22.856 A OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 7.20 12.795 23.592 21.545 A OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 6.84 14.613 22.138 20.886 A O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 6.92 15.775 21.353 21.275 A C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 7.32 16.125 20.559 19.998 A C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 6.63 15.161 19.481 19.963 A O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 8.13 15.959 21.337 18.674 A C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 10.37 17.026 20.918 17.825 A O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 7.05 14.643 20.785 18.005 A C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 6.64 14.780 19.276 18.587 A C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 6.53 13.616 18.487 18.444 A N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 6.46 12.313 18.854 18.420 A C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 6.11 11.451 17.828 18.247 A N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 5.80 12.302 16.759 18.104 A C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 5.84 12.047 15.378 17.897 A C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 5.84 10.904 14.846 17.797 A O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 5.19 13.084 14.538 17.940 A N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 5.40 14.330 15.021 18.093 A C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 5.73 15.301 14.239 18.114 A N2 DG 2 ATOM A N2 DG 1 2 1.00 1 N 5.84 14.720 16.295 18.269 A N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 5.72 13.618 17.091 18.299 A C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 13.42 17.862 21.860 16.888 A P DA 3 ATOM A P DA 1 3 1.00 1 P 12.14 18.572 22.718 17.746 A OP1 DA 3 ATOM A OP1 DA 1 3 1.00 1 O 13.24 17.019 22.368 15.783 A OP2 DA 3 ATOM A OP2 DA 1 3 1.00 1 O 10.62 19.092 20.920 16.329 A O5' DA 3 ATOM A O5' DA 1 3 1.00 1 O 8.71 19.884 20.368 17.301 A C5' DA 3 ATOM A C5' DA 1 3 1.00 1 C 6.88 20.100 18.951 16.719 A C4' DA 3 ATOM A C4' DA 1 3 1.00 1 C 5.16 18.880 18.192 16.910 A O4' DA 3 ATOM A O4' DA 1 3 1.00 1 O 7.60 20.495 18.843 15.218 A C3' DA 3 ATOM A C3' DA 1 3 1.00 1 C 8.38 21.609 18.120 15.114 A O3' DA 3 ATOM A O3' DA 1 3 1.00 1 O 6.89 19.308 18.145 14.611 A C2' DA 3 ATOM A C2' DA 1 3 1.00 1 C 5.97 18.719 17.295 15.850 A C1' DA 3 ATOM A C1' DA 1 3 1.00 1 C 4.95 17.293 17.183 15.615 A N9 DA 3 ATOM A N9 DA 1 3 1.00 1 N 4.20 16.403 18.177 15.554 A C8 DA 3 ATOM A C8 DA 1 3 1.00 1 C 4.48 15.171 17.760 15.271 A N7 DA 3 ATOM A N7 DA 1 3 1.00 1 N 3.83 15.314 16.405 15.163 A C5 DA 3 ATOM A C5 DA 1 3 1.00 1 C 3.43 14.355 15.371 14.869 A C6 DA 3 ATOM A C6 DA 1 3 1.00 1 C 3.45 13.056 15.620 14.707 A N6 DA 3 ATOM A N6 DA 1 3 1.00 1 N 3.81 14.854 14.112 14.772 A N1 DA 3 ATOM A N1 DA 1 3 1.00 1 N 3.43 16.145 13.881 15.005 A C2 DA 3 ATOM A C2 DA 1 3 1.00 1 C 3.38 17.104 14.765 15.263 A N3 DA 3 ATOM A N3 DA 1 3 1.00 1 N 3.85 16.603 16.006 15.336 A C4 DA 3 ATOM A C4 DA 1 3 1.00 1 C 10.67 22.492 17.754 13.849 A P DT 4 ATOM A P DT 1 4 1.00 1 P 11.17 23.705 17.310 14.468 A OP1 DT 4 ATOM A OP1 DT 1 4 1.00 1 O 11.20 22.429 18.822 12.910 A OP2 DT 4 ATOM A OP2 DT 1 4 1.00 1 O 8.98 21.915 16.358 13.171 A O5' DT 4 ATOM A O5' DT 1 4 1.00 1 O 8.22 22.088 15.179 13.862 A C5' DT 4 ATOM A C5' DT 1 4 1.00 1 C 6.94 21.520 14.083 12.927 A C4' DT 4 ATOM A C4' DT 1 4 1.00 1 C 6.44 20.122 14.190 12.920 A O4' DT 4 ATOM A O4' DT 1 4 1.00 1 O 7.41 22.005 14.196 11.427 A C3' DT 4 ATOM A C3' DT 1 4 1.00 1 C 7.98 22.583 13.026 11.082 A O3' DT 4 ATOM A O3' DT 1 4 1.00 1 O 6.43 20.683 14.429 10.651 A C2' DT 4 ATOM A C2' DT 1 4 1.00 1 C 6.42 19.625 13.931 11.595 A C1' DT 4 ATOM A C1' DT 1 4 1.00 1 C 7.09 18.312 14.678 11.584 A N1 DT 4 ATOM A N1 DT 1 4 1.00 1 N 6.48 17.176 13.919 11.474 A C2 DT 4 ATOM A C2 DT 1 4 1.00 1 C 7.01 17.176 12.714 11.400 A O2 DT 4 ATOM A O2 DT 1 4 1.00 1 O 6.10 16.003 14.599 11.504 A N3 DT 4 ATOM A N3 DT 1 4 1.00 1 N 6.47 15.859 15.975 11.639 A C4 DT 4 ATOM A C4 DT 1 4 1.00 1 C 6.23 14.720 16.452 11.658 A O4 DT 4 ATOM A O4 DT 1 4 1.00 1 O 6.71 17.062 16.735 11.756 A C5 DT 4 ATOM A C5 DT 1 4 1.00 1 C 6.43 17.081 18.229 11.920 A C7 DT 4 ATOM A C7 DT 1 4 1.00 1 C 7.07 18.223 16.059 11.740 A C6 DT 4 ATOM A C6 DT 1 4 1.00 1 C 9.16 23.438 12.796 9.724 A P DC 5 ATOM A P DC 1 5 1.00 1 P 9.88 24.017 11.532 9.987 A OP1 DC 5 ATOM A OP1 DC 1 5 1.00 1 O 9.23 24.044 13.964 9.291 A OP2 DC 5 ATOM A OP2 DC 1 5 1.00 1 O 8.84 22.263 12.303 8.631 A O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 7.40 21.604 11.142 8.821 A C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 7.69 20.379 11.230 7.846 A C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 7.23 19.433 12.146 8.436 A O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 7.99 20.735 11.764 6.459 A C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 8.69 20.120 10.965 5.483 A O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 7.61 20.167 13.187 6.355 A C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 7.36 18.989 12.953 7.413 A C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 6.34 18.255 14.197 7.756 A N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 6.66 16.933 13.977 8.089 A C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 6.04 16.396 12.890 8.172 A O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 6.85 16.205 15.111 8.362 A N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 6.69 16.694 16.394 8.359 A C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 5.98 15.795 17.372 8.589 A N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 6.61 18.068 16.582 8.005 A C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 7.02 18.788 15.479 7.755 A C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 9.80 20.940 9.871 4.658 A P DG 6 ATOM A P DG 1 6 1.00 1 P 10.70 21.451 8.973 5.613 A OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 9.42 21.790 10.576 3.710 A OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 8.23 19.780 9.012 3.914 A O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 7.35 18.998 8.117 4.554 A C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 6.70 17.941 7.567 3.583 A C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 5.78 17.063 8.587 3.152 A O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 5.87 18.507 7.011 2.241 A C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 6.25 17.630 5.984 1.871 A O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 5.47 18.528 8.250 1.358 A C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 5.38 17.207 8.987 1.759 A C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 5.58 17.265 10.389 1.690 A N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 5.86 18.307 11.223 1.782 A C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 6.45 17.994 12.512 1.763 A N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 5.60 16.639 12.505 1.677 A C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 6.05 15.676 13.580 1.587 A C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 5.80 15.971 14.816 1.593 A O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 5.51 14.389 13.232 1.536 A N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 5.78 14.041 11.961 1.500 A C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 5.90 12.827 11.633 1.418 A N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 5.26 14.826 10.866 1.537 A N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 5.82 16.130 11.250 1.623 A C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 7.09 15.137 18.308 4.882 A C1 DM1 7 HETATM B C1 DM1 2 1.00 1 C 6.02 16.344 19.047 4.902 A C2 DM1 7 HETATM B C2 DM1 2 1.00 1 C 6.39 17.550 18.370 4.878 A C3 DM1 7 HETATM B C3 DM1 2 1.00 1 C 5.38 17.557 16.958 4.868 A C4 DM1 7 HETATM B C4 DM1 2 1.00 1 C 6.02 18.793 16.346 4.847 A O4 DM1 7 HETATM B O4 DM1 2 1.00 1 O 5.67 16.362 16.238 4.837 A C5 DM1 7 HETATM B C5 DM1 2 1.00 1 C 5.87 16.333 14.825 4.830 A C6 DM1 7 HETATM B C6 DM1 2 1.00 1 C 4.78 17.498 14.126 4.734 A O6 DM1 7 HETATM B O6 DM1 2 1.00 1 O 5.47 15.114 14.120 4.846 A C7 DM1 7 HETATM B C7 DM1 2 1.00 1 C 5.34 15.086 12.706 4.798 A C8 DM1 7 HETATM B C8 DM1 2 1.00 1 C 5.08 16.241 11.946 4.824 A O8 DM1 7 HETATM B O8 DM1 2 1.00 1 O 5.07 13.849 12.027 4.758 A C9 DM1 7 HETATM B C9 DM1 2 1.00 1 C 5.43 13.906 10.542 4.818 A C10 DM1 7 HETATM B C10 DM1 2 1.00 1 C 5.05 14.491 10.294 6.146 A O10 DM1 7 HETATM B O10 DM1 2 1.00 1 O 5.21 12.622 9.781 4.505 A C11 DM1 7 HETATM B C11 DM1 2 1.00 1 C 5.31 11.448 10.538 5.388 A C12 DM1 7 HETATM B C12 DM1 2 1.00 1 C 4.27 11.587 10.721 6.834 A O12 DM1 7 HETATM B O12 DM1 2 1.00 1 O 6.03 10.181 9.724 5.082 A C13 DM1 7 HETATM B C13 DM1 2 1.00 1 C 6.34 9.428 10.087 4.050 A O13 DM1 7 HETATM B O13 DM1 2 1.00 1 O 5.46 9.835 8.537 5.938 A C14 DM1 7 HETATM B C14 DM1 2 1.00 1 C 4.65 11.330 11.981 4.769 A C15 DM1 7 HETATM B C15 DM1 2 1.00 1 C 5.22 12.661 12.710 4.789 A C16 DM1 7 HETATM B C16 DM1 2 1.00 1 C 5.32 12.675 14.129 4.825 A C17 DM1 7 HETATM B C17 DM1 2 1.00 1 C 5.11 11.507 14.789 4.756 A O17 DM1 7 HETATM B O17 DM1 2 1.00 1 O 5.55 13.904 14.822 4.834 A C18 DM1 7 HETATM B C18 DM1 2 1.00 1 C 5.93 13.892 16.238 4.860 A C19 DM1 7 HETATM B C19 DM1 2 1.00 1 C 6.80 12.748 16.875 4.877 A O19 DM1 7 HETATM B O19 DM1 2 1.00 1 O 6.28 15.138 16.915 4.866 A C20 DM1 7 HETATM B C20 DM1 2 1.00 1 C 6.16 20.055 17.067 4.870 A C21 DM1 7 HETATM B C21 DM1 2 1.00 1 C 5.58 15.439 9.277 6.360 A C1' DM1 7 HETATM B C1' DM1 2 1.00 1 C 5.38 16.627 9.760 7.290 A C2' DM1 7 HETATM B C2' DM1 2 1.00 1 C 6.72 15.956 9.840 8.724 A C3' DM1 7 HETATM B C3' DM1 2 1.00 1 C 6.29 17.054 10.203 9.675 A N3' DM1 7 HETATM B N3' DM1 2 1.00 1 N 6.32 15.247 8.517 9.174 A C4' DM1 7 HETATM B C4' DM1 2 1.00 1 C 7.62 16.275 7.499 9.209 A O4' DM1 7 HETATM B O4' DM1 2 1.00 1 O 6.85 14.129 8.146 8.137 A C5' DM1 7 HETATM B C5' DM1 2 1.00 1 C 6.75 14.823 8.061 6.825 A O5' DM1 7 HETATM B O5' DM1 2 1.00 1 O 7.09 13.516 6.799 8.452 A C6' DM1 7 HETATM B C6' DM1 2 1.00 1 C 8.20 16.067 19.012 24.250 A O HOH 8 HETATM C O HOH 3 1.00 1 O 8.60 10.636 25.056 22.317 A O HOH 9 HETATM C O HOH 3 1.00 1 O 7.69 18.906 16.508 25.145 A O HOH 10 HETATM C O HOH 3 1.00 1 O 17.39 15.858 5.598 11.058 A O HOH 11 HETATM C O HOH 3 1.00 1 O 16.14 18.453 11.430 13.714 A O HOH 12 HETATM C O HOH 3 1.00 1 O 34.68 17.297 3.715 4.011 A O HOH 13 HETATM C O HOH 3 1.00 1 O 19.95 25.948 15.723 13.351 A O HOH 14 HETATM C O HOH 3 1.00 1 O 14.84 13.760 8.210 1.713 A O HOH 15 HETATM C O HOH 3 1.00 1 O 17.02 22.378 15.724 7.385 A O HOH 16 HETATM C O HOH 3 1.00 1 O 20.31 10.828 19.229 5.516 A O HOH 17 HETATM C O HOH 3 1.00 1 O 14.94 21.952 13.154 3.312 A O HOH 18 HETATM C O HOH 3 1.00 1 O 10.24 19.540 14.424 2.878 A O HOH 19 HETATM C O HOH 3 1.00 1 O 37.04 8.690 16.272 16.461 A O HOH 20 HETATM C O HOH 3 1.00 1 O 14.76 13.499 19.002 11.843 A O HOH 21 HETATM C O HOH 3 1.00 1 O 15.20 17.440 5.950 6.938 A O HOH 22 HETATM C O HOH 3 1.00 1 O 14.30 14.091 6.294 4.429 A O HOH 23 HETATM C O HOH 3 1.00 1 O 19.99 17.255 21.016 13.603 A O HOH 24 HETATM C O HOH 3 1.00 1 O 11.24 9.091 21.535 20.030 A O HOH 25 HETATM C O HOH 3 1.00 1 O 19.68 25.784 15.884 10.705 A O HOH 26 HETATM C O HOH 3 1.00 1 O 14.42 19.398 8.511 10.122 A O HOH 27 HETATM C O HOH 3 1.00 1 O 38.89 21.324 7.286 7.970 A O HOH 28 HETATM C O HOH 3 1.00 1 O 32.70 17.389 25.213 18.945 A O HOH 29 HETATM C O HOH 3 1.00 1 O 27.45 18.881 21.950 20.084 A O HOH 30 HETATM C O HOH 3 1.00 1 O 24.06 16.079 21.808 25.005 A O HOH 31 HETATM C O HOH 3 1.00 1 O 13.63 17.866 16.713 1.191 A O HOH 32 HETATM C O HOH 3 1.00 1 O 35.41 24.586 10.051 3.278 A O HOH 33 HETATM C O HOH 3 1.00 1 O 28.28 13.982 25.966 24.516 A O HOH 34 HETATM C O HOH 3 1.00 1 O 21.00 21.326 23.484 16.003 A O HOH 35 HETATM C O HOH 3 1.00 1 O 40.31 23.779 8.820 7.065 A O HOH 36 HETATM C O HOH 3 1.00 1 O 19.92 13.034 19.380 14.690 A O HOH 37 HETATM C O HOH 3 1.00 1 O 18.71 20.492 18.617 11.378 A O HOH 38 HETATM C O HOH 3 1.00 1 O 13.12 17.220 20.007 8.427 A O HOH 39 HETATM C O HOH 3 1.00 1 O 7.93 10.307 5.309 7.416 A O HOH 40 HETATM C O HOH 3 1.00 1 O 19.93 14.021 3.339 9.137 A O HOH 41 HETATM C O HOH 3 1.00 1 O 37.62 20.559 15.742 0.791 A O HOH 42 HETATM C O HOH 3 1.00 1 O 20.86 25.782 13.183 13.867 A O HOH 43 HETATM C O HOH 3 1.00 1 O 16.44 11.395 5.547 4.908 A O HOH 44 HETATM C O HOH 3 1.00 1 O 33.06 12.098 2.775 4.854 A O HOH 45 HETATM C O HOH 3 1.00 1 O 19.48 21.516 21.509 20.731 A O HOH 46 HETATM C O HOH 3 1.00 1 O 32.12 21.538 17.827 8.924 A O HOH 47 HETATM C O HOH 3 1.00 1 O 27.48 23.090 17.967 3.461 A O HOH 48 HETATM C O HOH 3 1.00 1 O 41.37 18.658 21.366 24.098 A O HOH 49 HETATM C O HOH 3 1.00 1 O 27.52 18.209 24.339 21.758 A O HOH 50 HETATM C O HOH 3 1.00 1 O 38.73 25.738 11.881 5.618 A O HOH 51 HETATM C O HOH 3 1.00 1 O 30.10 19.330 19.237 1.782 A O HOH 52 HETATM C O HOH 3 1.00 1 O 19.46 23.394 15.011 5.080 A O HOH 53 HETATM C O HOH 3 1.00 1 O 39.58 15.648 3.788 5.884 A O HOH 54 HETATM C O HOH 3 1.00 1 O 33.66 20.150 18.796 24.480 A O HOH 55 HETATM C O HOH 3 1.00 1 O 29.17 13.785 0.979 2.557 A O HOH 56 HETATM C O HOH 3 1.00 1 O 31.71 21.307 20.630 23.284 A O HOH 57 HETATM C O HOH 3 1.00 1 O 66.66 15.671 27.779 24.764 A O HOH 58 HETATM C O HOH 3 1.00 1 O 25.13 20.703 25.999 13.628 A O HOH 59 HETATM C O HOH 3 1.00 1 O 45.82 20.479 22.859 13.187 A O HOH 60 HETATM C O HOH 3 1.00 1 O 32.65 14.476 5.103 0.868 A O HOH 61 HETATM C O HOH 3 1.00 1 O 0.035907 0.000000 0.000000 0.000000 0.035907 0.000000 0.000000 0.000000 0.019109 0.00000 0.00000 0.00000 Lipscomb, L.A. Peek, M.E. Zhou, F.X. Bertrand, J.A. VanDerveer, D. Williams, L.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 27.850 27.850 52.330 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C27 H29 N O10 527.520 DAUNOMYCIN DAUNORUBICIN non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H Y 108 N C Y 109 N C Y 110 N C Y 111 N C N 112 N O Y 113 N C N 114 N C N 115 N O Y 116 N C Y 117 N C N 118 N O Y 119 N C N 120 S C N 121 N O N 122 N C N 123 S C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N C Y 129 N C Y 130 N C N 131 N O Y 132 N C N 133 N C N 134 N O Y 135 N C N 136 N C N 137 R C N 138 N C N 139 S C N 140 N N N 141 S C N 142 N O N 143 S C N 144 N O N 145 N C N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N O N 176 N P N 177 N O N 178 N O N 179 N O N 180 N C N 181 R C N 182 N O N 183 S C N 184 N O N 185 N C N 186 R C N 187 N N N 188 N C N 189 N O N 190 N N N 191 N C N 192 N O N 193 N C N 194 N C N 195 N C N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N O N 212 N H N 213 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N sing N 120 N sing Y 121 N sing N 122 N sing N 123 N sing Y 124 N doub N 125 N doub N 126 N sing Y 127 N doub Y 128 N sing N 129 N sing Y 130 N sing N 131 N sing N 132 N sing Y 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing N 154 N sing Y 155 N doub N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing US Biochemistry BICHAW 0033 0006-2960 33 3649 3659 10.1021/bi00178a023 8142363 Water ring structure at DNA interfaces: hydration and dynamics of DNA-anthracycline complexes. 1994 10.2210/pdb152d/pdb pdb_0000152d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 113.00 1 AREA DETECTOR SDMS x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 1809.217 DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 1 syn polymer 527.520 DAUNOMYCIN 1 syn non-polymer 18.015 water 54 nat water no no (DC)(DG)(DA)(DT)(DC)(DG) CGATCG A polydeoxyribonucleotide n n n n n n 2.80 56.14 VAPOR DIFFUSION, SITTING DROP 6.50 pH 6.50, VAPOR DIFFUSION, SITTING DROP WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE_HCL 1 WATER 2 MPD 2 9.586 1 19 A 1 A 6 -0.683 A_DC1:DG6_A 1 2.842 0.157 -0.202 -0.112 -21.595 1 19 A 2 A 5 0.808 A_DG2:DC5_A 2 -0.157 -0.130 -0.590 -0.058 -6.261 1 20 A 3 A 4 3.284 A_DA3:DT4_A 3 -1.449 0.012 0.184 -0.164 6.261 1 20 A 4 A 3 3.284 A_DT4:DA3_A 4 -1.449 -0.012 0.184 -0.164 21.595 1 19 A 5 A 2 0.808 A_DC5:DG2_A 5 -0.157 0.130 -0.590 -0.058 -9.586 1 19 A 6 A 1 -0.683 A_DG6:DC1_A 6 2.842 -0.157 -0.202 -0.112 7.175 35.940 A A 1 2 -2.988 A A 6 5 7.153 -1.840 1.381 1.269 AA_DC1DG2:DC5DG6_AA 1 3.281 -5.326 35.749 2.634 -1.210 3.136 31.170 A A 2 3 -2.437 A A 5 4 2.923 -1.294 -1.277 0.419 AA_DG2DA3:DT4DC5_AA 2 -8.373 15.771 30.024 1.013 0.869 3.027 33.133 A A 3 4 9.105 A A 4 3 3.194 5.172 0.000 -0.853 AA_DA3DT4:DA3DT4_AA 3 0.000 0.000 32.738 -2.328 0.000 3.136 31.170 A A 4 5 -2.437 A A 3 2 2.923 -1.294 1.277 0.419 AA_DT4DC5:DG2DA3_AA 4 8.373 -15.771 30.024 1.013 -0.869 7.175 35.940 A A 5 6 -2.988 A A 2 1 7.153 -1.840 -1.381 1.269 AA_DC5DG6:DC1DG2_AA 5 -3.280 5.326 35.749 2.634 1.210 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1994-05-04 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1993-12-13 REL DM1 DAUNOMYCIN HOH water DM1 7 2 DM1 DM1 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A HOH 58 3 HOH HOH 58 A HOH 59 3 HOH HOH 59 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 27.8500000000 27.8500000000 26.1650000000 1 5.75 0.50 119.90 125.65 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 -5.73 0.40 121.90 116.17 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 -5.67 0.80 109.40 103.73 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 -6.49 0.80 102.40 95.91 A A A C3' C2' C1' DG DG DG 2 2 2 N 1 4.86 0.30 108.30 113.16 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -5.28 0.60 125.10 119.82 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 4.72 0.60 123.90 128.62 A A A N1 C2 N3 DG DG DG 2 2 2 N 1 -3.08 0.50 111.90 108.82 A A A C2 N3 C4 DG DG DG 2 2 2 N 1 6.39 0.50 111.50 117.89 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 -8.41 0.70 119.90 111.49 A A A N3 C2 N2 DG DG DG 2 2 2 N 1 -3.81 0.60 119.90 116.09 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 -5.42 0.90 105.70 100.28 A A A O5' P OP1 DA DA DA 3 3 3 N 1 -8.86 0.80 109.40 100.54 A A A O5' C5' C4' DA DA DA 3 3 3 N 1 11.09 1.20 119.70 130.79 A A A C3' O3' P DA DA DT 3 3 4 Y 1 -5.41 0.70 108.00 102.59 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 4.28 0.60 119.00 123.28 A A A C4 C5 C7 DT DT DT 4 4 4 N 1 9.62 1.50 119.60 129.22 A A A OP1 P OP2 DC DC DC 5 5 5 N 1 -7.36 0.90 105.70 98.34 A A A O5' P OP1 DC DC DC 5 5 5 N 1 -5.17 0.80 109.40 104.23 A A A O5' C5' C4' DC DC DC 5 5 5 N 1 -7.12 0.80 102.40 95.28 A A A C3' C2' C1' DC DC DC 5 5 5 N 1 3.05 0.50 106.80 109.85 A A A O4' C1' C2' DC DC DC 5 5 5 N 1 10.32 0.30 108.30 118.62 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 5.67 0.50 119.90 125.57 A A A C2 N3 C4 DC DC DC 5 5 5 N 1 -4.18 0.40 121.90 117.72 A A A N3 C4 C5 DC DC DC 5 5 5 N 1 6.69 0.60 118.90 125.59 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 5.75 0.70 120.20 125.95 A A A C5 C4 N4 DC DC DC 5 5 5 N 1 5.07 0.70 110.30 115.37 A A A C1' O4' C4' DG DG DG 6 6 6 N 1 -4.62 0.60 125.10 120.48 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 5.06 0.60 123.90 128.96 A A A N1 C2 N3 DG DG DG 6 6 6 N 1 5.30 0.50 111.50 116.80 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 -9.33 0.70 119.90 110.57 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 -3.98 0.60 128.60 124.62 A A A C5 C6 O6 DG DG DG 6 6 6 N 1 A A C2' C1' DC DC 1 1 0.072 0.010 1.519 1.591 N 1 A A O3' C3' DC DC 1 1 -0.038 0.006 1.419 1.381 N 1 A A C2' C1' DG DG 2 2 0.104 0.010 1.519 1.623 N 1 A A C6 N1 DG DG 2 2 -0.056 0.007 1.391 1.335 N 1 A A N7 C8 DG DG 2 2 0.046 0.006 1.305 1.351 N 1 A A C2 N2 DG DG 2 2 -0.094 0.010 1.341 1.247 N 1 A A C2' C1' DA DA 3 3 0.095 0.010 1.519 1.614 N 1 A A O3' C3' DA DA 3 3 -0.087 0.006 1.419 1.332 N 1 A A P O5' DT DT 4 4 0.063 0.010 1.593 1.656 N 1 A A O3' C3' DT DT 4 4 -0.069 0.006 1.419 1.350 N 1 A A P O5' DC DC 5 5 0.086 0.010 1.593 1.679 N 1 A A C5' C4' DC DC 5 5 0.056 0.007 1.512 1.568 N 1 A A C2' C1' DC DC 5 5 0.082 0.010 1.519 1.601 N 1 A A N1 C2 DG DG 6 6 -0.055 0.008 1.373 1.318 N 1 A A C6 N1 DG DG 6 6 -0.057 0.007 1.391 1.334 N 1 A A N9 C4 DG DG 6 6 0.051 0.008 1.375 1.426 N 1 A A C2 N2 DG DG 6 6 -0.081 0.010 1.341 1.260 N 0.2260000 1.400 3817 1 1.000 TR isotropic TR isotropic 1.400 54 212 38 120 0 0.027 fix fix 1.400 152D 54233 3817 1.000 1 refinement NUCLSQ DIVERSITY OF WATER RING SIZE AT DNA INTERFACES: HYDRATION AND DYNAMICS OF DNA-ANTHRACYCLINE COMPLEXES 1 N N 2 N N 3 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 6 A N1 DG 6 8_665 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 6 A O6 DG 6 8_665 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 6 A N2 DG 6 8_665 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 8_665 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 A DT 4 A N3 DT 4 8_665 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 A DT 4 A O4 DT 4 8_665 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 3 A N1 DA 3 8_665 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 3 A N6 DA 3 8_665 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 8_665 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 1 A N3 DC 1 8_665 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 1 A O2 DC 1 8_665 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 1 A N4 DC 1 8_665 DNA RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 152D PDB 1 152D 1 6 152D 1 6 152D A 1 1 6 BINDING SITE FOR RESIDUE DM1 A 7 A DM1 7 Software 13 A DC 1 A DC 1 13 8_665 A DG 2 A DG 2 13 8_665 A DA 3 A DA 3 13 8_665 A DT 4 A DT 4 13 1_555 A DC 5 A DC 5 13 1_555 A DG 6 A DG 6 13 1_555 A HOH 8 C HOH 13 8_665 A HOH 11 C HOH 13 1_555 A HOH 12 C HOH 13 8_665 A HOH 19 C HOH 13 1_555 A HOH 22 C HOH 13 1_555 A HOH 23 C HOH 13 1_555 A HOH 27 C HOH 13 1_555 92 P 41 21 2