Category struct_conn

Category Description

              Data items in the STRUCT_CONN category record details about
               the interactions between portions of structure. These can be
               hydrogen bonds, salt bridges, disulfide bridges, and so on.

               The STRUCT_CONN_TYPE records define the criteria used to
               identify these contacts.




Category Examples




Example 1:

    Example 1 - based on PDB entry 5HVP and laboratory records for the
                structure corresponding to PDB entry 5HVP




     loop_
    _struct_conn.id
    _struct_conn.conn_type_id
    _struct_conn.ptnr1_label_comp_id
    _struct_conn.ptnr1_label_asym_id
    _struct_conn.ptnr1_label_seq_id
    _struct_conn.ptnr1_label_atom_id
    _struct_conn.ptnr1_role
    _struct_conn.ptnr1_symmetry
    _struct_conn.ptnr2_label_comp_id
    _struct_conn.ptnr2_label_asym_id
    _struct_conn.ptnr2_label_seq_id
    _struct_conn.ptnr2_label_atom_id
    _struct_conn.ptnr2_role
    _struct_conn.ptnr2_symmetry
    _struct_conn.details
      C1  saltbr  ARG  A  87 NZ1 positive 1_555 GLU  A  92  OE1 negative 1_555
.
      C2  hydrog  ARG  B 287 N   donor    1_555 GLY  B 292  O   acceptor 1_555
.
    # - - - - data truncated for brevity - - - -




Key Category Items

• _struct_conn.id



Items in Category struct_conn

Item Name	Mandatory Code
_struct_conn.ptnr1_auth_asym_id	no
_struct_conn.ptnr2_auth_asym_id	no
_struct_conn.ptnr1_auth_atom_id	no
_struct_conn.ptnr2_auth_atom_id	no
_struct_conn.ptnr1_auth_comp_id	no
_struct_conn.ptnr2_auth_comp_id	no
_struct_conn.ptnr1_auth_seq_id	no
_struct_conn.ptnr2_auth_seq_id	no
_struct_conn.ptnr1_label_alt_id	no
_struct_conn.ptnr2_label_alt_id	no
_struct_conn.ptnr1_label_comp_id	yes
_struct_conn.ptnr2_label_comp_id	yes
_struct_conn.ptnr1_label_atom_id	yes
_struct_conn.ptnr2_label_atom_id	yes
_struct_conn.ptnr1_label_seq_id	yes
_struct_conn.ptnr2_label_seq_id	yes
_struct_conn.ptnr1_label_asym_id	yes
_struct_conn.ptnr2_label_asym_id	yes
_struct_conn.conn_type_id	yes
_struct_conn.details	no
_struct_conn.id	yes
_struct_conn.ptnr1_role	no
_struct_conn.ptnr1_symmetry	no
_struct_conn.ptnr2_role	no
_struct_conn.ptnr2_symmetry	no
_struct_conn.ndb_ptnr1_mod_name	no
_struct_conn.ndb_ptnr1_sugar_name	no
_struct_conn.ndb_ptnr1_replaced_atom	no
_struct_conn.ndb_ptnr1_label_ins_code	no
_struct_conn.ndb_ptnr1_label_alt_loc	no
_struct_conn.ndb_ptnr1_standard_comp_id	no
_struct_conn.ndb_ptnr2_label_ins_code	no
_struct_conn.ndb_ptnr3_auth_alt_loc	no
_struct_conn.ndb_ptnr3_auth_asym_id	no
_struct_conn.ndb_ptnr3_auth_atom_id	no
_struct_conn.ndb_ptnr3_auth_comp_id	no
_struct_conn.ndb_ptnr3_auth_ins_code	no
_struct_conn.ndb_ptnr3_auth_seq_id	no
_struct_conn.ndb_ptnr2_label_alt_loc	no
_struct_conn.ndb_ptnr3_label_alt_loc	no
_struct_conn.ndb_ptnr3_label_asym_id	no
_struct_conn.ndb_ptnr3_label_atom_id	no
_struct_conn.ndb_ptnr3_label_comp_id	no
_struct_conn.ndb_ptnr3_label_ins_code	no
_struct_conn.ndb_ptnr3_label_seq_id	no
_struct_conn.ndb_PDB_id	no


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