package msd_soap_service_pkg;
import java.lang.*;
import java.util.*;
import java.io.*;
import java.net.URL;
import org.apache.axis.client.Call;
import org.apache.axis.client.Service;
import org.apache.axis.encoding.XMLType;
import org.apache.axis.utils.Options;
import javax.xml.namespace.QName;
import javax.xml.rpc.ParameterMode;
import org.apache.axis.message.SOAPBodyElement;
import org.apache.axis.message.*;

public class msdsoapTest
{
    public static void main(String [] args) throws Exception  {
      try {
		long start = System.currentTimeMillis();
        // Make a service
        Msd_soap_service api_service = new Msd_soap_serviceLocator();
 
        // Now use the service to get a stub which implements the SDI.
        Msd_soap_servicePortType api_port = api_service.getmsd_soap_service();
		java.lang.String ssmQuery ="<SSMInput>" +
"<program>" +
  "SSM v1.38 // 30/06/2003 // by Eugene B. Krissinel," +
  "European Bioinformatics Institute, Hinxton, Cambridge CB1 9SD, UK" +
"</program>" +
"<query>" +
"<type>PDB entry</type>" +
"<pdbcode>1sar</pdbcode>" +
"</query>" +
"<target>" +
"<type>PDB archive</type>" +
"</target>" +
"<selection>" + 
"<type>Chain(s)</type>" +
"<chains>*(all)</chains>" +
"</selection>" +
"<percent1>70</percent1>" +
"<percent2>70</percent2>" +
"<sepchains>Yes</sepchains>" +
"<connectivity>Yes</connectivity>" +
"<bestmatch>Yes</bestmatch>" +
"<uniquematch>Yes</uniquematch>" +
"<precision>Normal</precision>" +
"<sorting>RMSD</sorting>" +
"</SSMInput>";						
        java.lang.String sessionID = "my_java_session_number";
		java.lang.Object[] inputArray = new java.lang.Object[2];
	    inputArray[0]= ssmQuery;
		inputArray[1]= sessionID;
	    int numOfParams = 2;
        
		int return1 = api_port.msdSSM(numOfParams, inputArray);
		if ( return1 == 0 )
		{
			System.out.println("msdSSM() method Called successfully.");
		}else{
			System.out.println("msdSSM() method call failed.");
		}
       
		byte[] buffer = api_port.msdGetSoapBase64Data( 0 , sessionID);
		
		ByteArrayInputStream ba = new ByteArrayInputStream(buffer);
		//int c = ba.count;
		FileWriter fout = new FileWriter("myjavaout.xml");
		int asc;
		int i =0;
		while (i < buffer.length)
		{asc = ba.read();
		 fout.write(asc);
		 i++; 
		}
		ba.close();
		fout.close();
		
		
		long finish = System.currentTimeMillis();
	    long time = finish-start;
	    System.out.println("Time taken = "+ time + " milliseconds.");
      } catch (Exception e) {
            System.err.println(e.toString());
	    e.printStackTrace();
      }
    }}