msdsoapTest.java

//---------------------------------------------------
// msdsoapTest.java
// 
// Project: PDBe API Framework 
// Module:  Java Client example for PDBe API Webservice (SOAP) Server 
//
// 
// SOAP User Layer
// Last updated: 25 February 2004 10:17
// (C) Siamak Sobhany
//---------------------------------------------------
// 
package msd_soap_service_pkg;
import java.lang.*;
import java.util.*;
import java.io.*;
import java.net.URL;
import org.apache.axis.client.Call;
import org.apache.axis.client.Service;
import org.apache.axis.encoding.XMLType;
import org.apache.axis.utils.Options;
import org.apache.axis.AxisFault;
import javax.xml.namespace.QName;
import javax.xml.rpc.ParameterMode;
import org.apache.axis.message.SOAPBodyElement;
import org.apache.axis.message.*;

public class msdsoapTest
{
    public static void main(String [] args) throws Exception  {
      try {
                long start = System.currentTimeMillis();
        // Make a service
        Msd_soap_service api_service = new Msd_soap_serviceLocator();
 
        // Now use the service to get a stub which implements the SDI.
        Msd_soap_servicePortType api_port = api_service.getmsd_soap_service();
                java.lang.String ssmQuery ="<SSMInput>" +
        "<program>" +                                                             
                  "SSM v1.38 // 30/06/2003 // by Eugene B. Krissinel," +                  
                  "European Bioinformatics Institute, Hinxton, Cambridge CB1 9SD, UK" +   
                "</program>" +                                                            
                "<query>" +                                                               
                "<type>PDB entry</type>" +                                                
                "<pdbcode>1sar</pdbcode>" +                                               
                "</query>" +                                                              
                "<target>" +                                                              
                "<type>PDB archive</type>" +                                              
                "</target>" +                                                             
                "<selection>" +                                                           
                "<type>Chain(s)</type>" +                                                 
                "<chains>*(all)</chains>" +                                               
                "</selection>" +                                                          
                "<percent1>70</percent1>" +                                               
                "<percent2>70</percent2>" +                                               
                "<sepchains>Yes</sepchains>" +                                            
                "<connectivity>Yes</connectivity>" +                                      
                "<bestmatch>Yes</bestmatch>" +                                            
                "<uniquematch>Yes</uniquematch>" +                                        
                "<precision>Normal</precision>" +                                         
                "<sorting>RMSD</sorting>" +                                               
                "</SSMInput>";                                                                                
        java.lang.String sessionID = "my_java_session_number";
                java.lang.Object[] inputArray = new java.lang.Object[2];
            inputArray[0]= ssmQuery;
                inputArray[1]= sessionID;
            int numOfParams = 2;
        
                //java.lang.Object resp;
        try
          { api_port.msdSSM(numOfParams, inputArray);
                System.out.println("msdSSM() method Called successfully.");
                
                byte[] buffer = api_port.msdGetSoapBase64Data( 0 , sessionID);
                System.out.println("msdGetSoapBase64Data() method Called successfully.");
                
                ByteArrayInputStream ba = new ByteArrayInputStream(buffer);
                //int c = ba.count;
                FileWriter fout = new FileWriter("myjavaout.xml");
                int asc;
                int i =0;
                while (i < buffer.length)
                {asc = ba.read();
                 fout.write(asc);
                 i++; 
                }
                ba.close();
                fout.close();
                
                long finish = System.currentTimeMillis();
            long time = finish-start;
            System.out.println("Time taken = "+ time + " milliseconds.");
                } // end try
        catch (AxisFault f){
                 System.out.println(f.getFaultString());
                 
        }
 } // end try
 catch (Exception e) {
            System.err.println(e.toString());
            e.printStackTrace();
      }
    }}

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