msd_main.c

/*---------------------------------------------------
 msd_main.c
 
 Project: PDBe API Framework 
 Module:  Sample of main program for calling api  

 To build:
    make app

 Last updated: 25 February 2004 10:17
 (C) Siamak Sobhany
------------------------------------------------------ */
#include <stdlib.h>
#include <stdio.h>
#include <time.h>



#ifndef __MSD_USER_H__
#include "msd_user.h"
#endif


int main(int argc, char* argv[]) {
  double difs;
  double dd;
  time_t starts;
  time_t ends; 
  
  clock_t        time_start;
  clock_t        time_end;
  

  int cr=1;
  int i=1;
  void* vcr=&cr;
  int     iparam=0;     /* integer parameter */
  double  dparam=0;     /* double parameter */
  char  sparam[16]="";    /* string parameter */
  int     fparam=0;     /* boolean flag */
  int xargc; 
  int row;
  char** xargv;
  const char* un="api1"; // "api1"  
  const char* pass="api155";  //"api155"
  const char* host="msdsrchd";  //"msdsrchd"
  
  
  char* sql;
  char* strval;
  char* strval2;
  MSDEnv msd;
  float f;
 
  char* statement="SELECT "
  "a.chem_comp_code, a.Orig_x, a.Orig_y, a.Orig_z, "
  "a.residue_id, a.residue_pdb_seq, a.residue_pdb_insert_code, a.chain_id, "
  "a.chain_code, a.Non_Assembly_Valid "
  "FROM atom_data a "
  "WHERE a.assembly_id = 43472 "
  "AND a.entry_id = :f<int> "; // 38175
                    
        
  
  
  char* loginstr=(char*)malloc(129);
 
  
  time_start=clock();
  
  
  
  
  sprintf(loginstr, "%s/%s@%s",un, pass, host);
 
  xargc=argc;
  xargv=argv;
  
  argc--;
  argv++;
  /*sprintf (args,"argv = %s ", *argv);*/
    /* decode arguments     strcmp (sw,"-i") == 0 */
    while (argc > 0 && (*argv[0] == '-')){  /* && (strncmp(*argv,"-*",1) == 0)*/
        
                if (strncmp (*argv,"-i",2) == 0) {
            
                        argv++;
                        argc--;
            iparam = atoi(*argv);
        }
        else if (strncmp (*argv,"-d",2) == 0) {
           
                        argv++;
                        argc--;
            dparam = atof(*argv);
        }
                else if (strncmp (*argv,"-f",2) == 0) {
                        
            fparam = 1;}
        
        else if (strncmp (*argv,"-s",2) == 0) {
           
                        argv++;
                        argc--;
            strcpy(sparam,*argv);
        }
        
                else {
                        printf ("\nUnknown switch: %s", *argv);} 
    
        
        argv++;
        argc--;
    } 
    /* report settings */
    printf ("\nInteger parameter = %d", iparam );
    printf ("\nDouble parameter = %f " , dparam );
    printf ("\nString parameter = %s ", sparam );
    printf ("\nFlag parameter = %d ", fparam );
    /* report rest of command line */
    printf ("\nRemaining arguments =\n");
        
    while (argc > 0){ 
         printf (*argv);
         printf ("\n");
         argv++;
         argc--;
        }
   
 
  starts = time (NULL);
  msd_lisp_init(xargc, xargv);
  msd_lisp_load("xlisp.lsp");
  printf ("Process starts...\n");
  
  
  
   if (msd_init(&msd)==0) 
   { 
           printf ("\nConnection to the PDBe initialized.\n"); 
   } 
  
  
   if (msd_attach(&msd,host)==0) 
   { 
           printf ("\nAttached to 'msdsrch1' server successfully.\n"); 
   } 
   if (msd_begin(&msd,un,pass)==0) 
   { 
     printf ("\nLogin to 'msdsrch1' successfully.\n"); 
   } 
  
   sql = (char*)malloc(strlen(statement)+1); 
   strcpy(sql, statement); 
   msd_sqlinit(&msd, sql); 
   msd_setcriteria(&msd,"i",38175); 
  
  
   
   row = msd_getrownum(&msd);
   while (row<26612) 
   {  row = msd_getrownum(&msd);
      msd_getnext(&msd);
          if (row % 1000 == 0){
          MSDGetValue (msd,1,f,vfloat); 
          printf ("\nFloat value = %.4lf ", f );
      
          MSDGetValue (msd,0,strval,vstr); 

          printf ("\nString value = %s ", strval );
      
          f = msd_ugetfloat(&msd,1);
           printf ("\nSecond float value = %.4lf ", f );
       printf ("\nString value = %s ",msd_ugetstr(&msd,0,strval2));
        
          }
   } 
  

 
  msd_manager(&msd);
  msd_get_object_entry(&msd,38175);
  printf ("\nNumber of atoms:  %d.\n", msd_get_number_of_atoms(&msd));
  
  printf ("\nEntry ID for:  %i.\n", msd_get_entry_id(&msd, "1gw5"));
  printf ("\nACCESSION CODE for:  %s.\n", msd_get_accession_code(&msd, 38175));

   msd_end(&msd); 
   msd_detach(&msd); 
   msd_logoff(&msd); 
  ends = time (NULL);
  difs = difftime (ends,starts);
  time_end = clock();
  printf ("Process has taken %.2lf seconds.\n", difs );
  printf ("Process has taken %.2lf milliseconds.\n", (time_end - time_start)/CLOCKS_PER_SEC);
  msd_free(&msd); 
 
  return 0; 
} 


 

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