DimeClient.java

//---------------------------------------------------
// DimeClient.java
// 
// Project: PDBe API Framework 
// Module:  Java Client for PDBe API Webservice (SOAP) Server 
// to get files through SOAP 64 bit binary format
// 
// SOAP User Layer
// Last updated: 25 February 2004 10:17
// (C) Siamak Sobhany
//---------------------------------------------------
// 


package msd_soap_service_pkg;
import java.lang.*;
import java.util.*;
import java.io.*;
import java.net.URL;
import org.apache.axis.client.Call;
import org.apache.axis.client.Service;
import org.apache.axis.encoding.XMLType;
import org.apache.axis.utils.Options;
import javax.xml.namespace.QName;
import javax.xml.rpc.ParameterMode;
import org.apache.axis.message.SOAPBodyElement;
import org.apache.axis.message.*;

public class DimeClient
{
    public static void main(String [] args) throws Exception  {
      try {
                long start = System.currentTimeMillis();
        // Make a service
        Msd_soap_service api_service = new Msd_soap_serviceLocator();
 
        // Now use the service to get a stub which implements the SDI.
        Msd_soap_servicePortType api_port = api_service.getmsd_soap_service();
 
        java.lang.String fastaQuery ="<fasta><evalue>1e-10</evalue><library>pdb</library><sequence>QLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD</sequence></fasta>";
        java.lang.String sessionID = "sdlvhdvdfvvhfv";
                java.lang.Object[] input = new java.lang.Object[2];
            input[0]= fastaQuery;
                input[1]= sessionID;
            int numParam = 2;
        
                //api_port.msdFasta(numParam, input);
                byte[] buffer = api_port.msdGetSoapBase64Data( 0 , "my_session_number_out.xml");
                ByteArrayInputStream ba = new ByteArrayInputStream(buffer);
                //int c = ba.count;
                FileWriter fout = new FileWriter("myout.xml");
                int asc;
                asc = ba.read();
                fout.write(asc);
                while (asc >= -1)
                {
                 fout.write(asc);
                }
                ba.close();
                fout.close();
                long finish = System.currentTimeMillis();
            long time = finish-start;
            System.out.println("Time taken = "+ time + " milliseconds.");
      } catch (Exception e) {
            System.err.println(e.toString());
            e.printStackTrace();
      }
    }}

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