MSDAPI: ApiClient.java Source File

00001 //---------------------------------------------------
00002 // ApiClient.java
00003 // 
00004 // Project: PDBe API Framework 
00005 // Module:  Java Client for PDBe API Webservice (SOAP) Server 
00006 //
00007 // 
00008 // SOAP User Layer
00009 // Last updated: 25 February 2004 10:17
00010 // (C) Siamak Sobhany
00011 //---------------------------------------------------
00012 // 
00013 
00014 
00015 package msd_soap_service_pkg;
00016 //import java.util.*;
00017 //import org.apache.axis.*;
00018 import org.apache.axis.client.Call;
00019 import org.apache.axis.client.Service;
00020 import org.apache.axis.encoding.XMLType;
00021 import org.apache.axis.utils.Options;
00022 //import org.apache.axis.soap.*;
00023 import javax.xml.namespace.QName;
00024 //import org.apache.axis.wsdl.*;
00025 import javax.xml.rpc.ParameterMode;
00026 
00028 //import javax.xml.rpc.*;
00029 import msd_soap_types.*;
00030 import msd_soap_types.holders.*;
00032 
00033 import org.apache.axis.message.SOAPBodyElement;
00034 
00036 //import org.w3c.dom.Element;
00037 //import org.w3c.dom.CDATASection;
00038 //import org.w3c.dom.Document; 
00039 //import javax.xml.parsers.DocumentBuilderFactory;
00040 //import javax.xml.parsers.DocumentBuilder;
00041 import java.net.URL;
00042 //import java.util.Vector;
00043 //import org.apache.axis.message.*;
00044 
00045 // get all the msd utilities (eg. Debug)
00046 //import ebi.msd.utils.*;
00047 
00048 public class ApiClient
00049 {    
00050         
00051 
00052     public static void main(java.lang.String [] args)
00053     {   
00054         try {
00055  
00056            Options options = new Options(args);
00057             
00058            
00059             //~~~~String textToSend ="<fasta><evalue>1e-10</evalue><library>pdb</library><sequence>QLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD</sequence></fasta>";
00060         //~~~~String endpointURL = "http://www.ebi.ac.uk/msd-srv/ssm/cgi-bin/ws/msdsearch_soap_service.cgi";
00061             //~~~~String endpointURL = "http://parrot.ebi.ac.uk:8099/cgi-bin/msd_soap_service.cgi?client1";
00062                 
00063           
00064                 
00065                 
00066                 
00067                 
00068                 
00069                 java.lang.String endpointURL = "http://parrot.ebi.ac.uk:8100";
00070                 
00071                 long before = System.currentTimeMillis();
00072             
00073             Service  apiserver = new Service();
00074         Call connect = (Call) apiserver.createCall();
00075             Call resultset = (Call) apiserver.createCall();
00076                 Call query = (Call) apiserver.createCall();
00077                 Call exec_query = (Call) apiserver.createCall();
00078             //connect.setProperty("ENCODING_STYLE_PROPERTY",Constants.NS_PREFIX_SOAP_ENC);
00079         connect.setTargetEndpointAddress( new java.net.URL(endpointURL) );
00080                 resultset.setTargetEndpointAddress( new java.net.URL(endpointURL) );
00081         query.setTargetEndpointAddress( new java.net.URL(endpointURL) ); 
00082                 exec_query.setTargetEndpointAddress( new java.net.URL(endpointURL) ); 
00083             
00084             //~~~~~call.addParameter( "numofpars", XMLType.XSD_INT, ParameterMode.IN );
00085             //~~~~~call.addParameter( "inparams",XMLType.XSD_ANYTYPE, ParameterMode.IN );
00086             
00087                 connect.addParameter( "conn-name", XMLType.XSD_STRING, ParameterMode.IN );
00088                 connect.addParameter( "host", XMLType.XSD_STRING, ParameterMode.IN );
00089                 connect.addParameter( "usern", XMLType.XSD_STRING, ParameterMode.IN );
00090                 connect.addParameter( "pass", XMLType.XSD_STRING, ParameterMode.IN );
00091                 connect.addParameter( "status",XMLType.XSD_INT,ParameterMode.OUT);
00092             connect.setReturnType( org.apache.axis.encoding.XMLType.XSD_INT);
00093 
00094                 resultset.addParameter( "conn-name", XMLType.XSD_STRING, ParameterMode.IN );
00095                 resultset.addParameter( "query-name", XMLType.XSD_STRING, ParameterMode.IN );
00096                 resultset.addParameter( "res-name", XMLType.XSD_STRING, ParameterMode.IN );
00097         resultset.addParameter( "nors",XMLType.XSD_INT,ParameterMode.IN);
00098                 resultset.addParameter( "status",XMLType.XSD_INT,ParameterMode.OUT);
00099             resultset.setReturnType( org.apache.axis.encoding.XMLType.XSD_INT);
00100             
00101                 query.addParameter( "conn-name", XMLType.XSD_STRING, ParameterMode.IN );
00102                 query.addParameter( "query-name", XMLType.XSD_STRING, ParameterMode.IN );
00103                 query.addParameter( "result-name", XMLType.XSD_STRING, ParameterMode.IN );
00104                 query.addParameter( "status",XMLType.XSD_INT,ParameterMode.OUT);
00105             query.setReturnType( org.apache.axis.encoding.XMLType.XSD_INT);
00106                 
00107                 
00108                 
00109                 
00110                 exec_query.addParameter( "conn-name", XMLType.XSD_STRING, ParameterMode.IN );
00111                 exec_query.addParameter( "query-name", XMLType.XSD_STRING, ParameterMode.IN );
00112                 exec_query.addParameter( "result-name", XMLType.XSD_STRING, ParameterMode.IN );
00113                 exec_query.addParameter( "buf", XMLType.XSD_STRING, ParameterMode.IN );
00114                 exec_query.addParameter( "stm", XMLType.XSD_STRING, ParameterMode.IN );
00115                 exec_query.addParameter(new javax.xml.namespace.QName("", "status"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"), int.class, javax.xml.rpc.ParameterMode.OUT);
00116         exec_query.addParameter(new javax.xml.namespace.QName("", "rs"), new javax.xml.namespace.QName("urn:msd_soap_types", "queryResp"), msd_soap_types.QueryResp.class, javax.xml.rpc.ParameterMode.OUT);
00117         exec_query.setReturnType(org.apache.axis.encoding.XMLType.AXIS_VOID);
00118         exec_query.setUseSOAPAction(true);
00119         exec_query.setSOAPActionURI("");
00120         exec_query.setOperationStyle("rpc");
00121                 exec_query.setOperationName( "msd-exec-query");
00122                 
00123                 
00124                 
00125                 //polyparam.addParameter( "conn-name", XMLType.XSD_STRING, ParameterMode.IN );
00126                 //call.setEncodingStyle("http://schemas.xmlsoap.org/soap/encoding/");
00127             
00128                 //~~~~~String [] input = new String[2];
00129             //~~~~~input[1]="M553133264911";
00130             //~~~~~input[0]=textToSend;
00131             //~~~~~Integer numParam = new Integer(input.length);
00132         java.lang.Integer ConnOutParam=new java.lang.Integer(0);
00133         java.lang.Integer ResultOutParam=new java.lang.Integer(0);
00134                 java.lang.String  connname = "MyConnection";
00135                 java.lang.String  queryname = "MyQuery";
00136                 java.lang.String  resname = "MyResult";
00137                 
00138                 //java.lang.String  host = "msdsrchd";
00139                 //java.lang.String  user = "api";
00140                 //java.lang.String  pass = "api55";
00141         
00142                 java.lang.Integer nors = new java.lang.Integer(2);
00143                 java.lang.String  sql = "select  *  from WHOUSE1.atom_data where atom_id >= 2010000*:f<int> and atom_id <= 2010300*:f<int>";
00144                 java.lang.Integer buf = new java.lang.Integer(50);
00145             
00146                 
00147         connect.setOperationName( "msd-connect");
00148                 resultset.setOperationName( "msd-resultset");
00149         query.setOperationName( "msd-query");
00150                 
00151                 
00152 
00153 
00154                 javax.xml.rpc.holders.IntHolder status= new javax.xml.rpc.holders.IntHolder();
00155         msd_soap_types.holders.QueryRespHolder rs = new msd_soap_types.holders.QueryRespHolder();
00156 
00157             
00158                 java.lang.Integer connret=(java.lang.Integer)connect.invoke(new java.lang.Object[]{connname});
00159                 java.lang.Integer resultret=(java.lang.Integer)resultset.invoke(new java.lang.Object[]{connname,queryname,resname,nors});
00160         java.lang.Integer queryret=(java.lang.Integer)query.invoke(new java.lang.Object[]{connname,queryname,resname});
00161             java.lang.Object exec_queryret= exec_query.invoke(new java.lang.Object[]{connname,queryname,resname,buf,sql});
00162             
00163                 if (exec_queryret instanceof java.rmi.RemoteException) {
00164             throw (java.rmi.RemoteException)exec_queryret;
00165         }
00166         else {
00167             java.util.Map _output;
00168             _output = exec_query.getOutputParams();
00169             try {
00170                 status.value = ((java.lang.Integer) _output.get(new javax.xml.namespace.QName("", "status"))).intValue();
00171             } catch (java.lang.Exception _exception) {
00172                 status.value = ((java.lang.Integer) org.apache.axis.utils.JavaUtils.convert(_output.get(new javax.xml.namespace.QName("", "status")), int.class)).intValue();
00173             }
00174             try {
00175                 rs.value = (msd_soap_types.QueryResp) _output.get(new javax.xml.namespace.QName("", "rs"));
00176             } catch (java.lang.Exception _exception) {
00177                 rs.value = (msd_soap_types.QueryResp) org.apache.axis.utils.JavaUtils.convert(_output.get(new javax.xml.namespace.QName("", "rs")), msd_soap_types.QueryResp.class);
00178             }
00179         }
00180                 
00181                 
00182                 
00183                 //Map rs = exec_query.getOutputParams();
00184                 //Integer stts = (Integer) rs.get(new javax.xml.namespace.QName("", "status"));
00185                 //Object res  = (Object) rs.get(new javax.xml.namespace.QName("", "rs"));
00186                 //String rs=exec_query.getOutputValues();
00187                 //Integer rety= (Integer)call.invoke(new Object[]{numParam,input});
00188             //SOAPEnvelope soap = (SOAPEnvelope) call.invoke(new Object[]{numParam,input});
00189             //Object o = call.invoke(new Object[]{numParam,input});
00190             //o.toString();
00191             //SOAPBodyElement elem  = null ;
00192             //Element         e     = null ;
00193 
00194             //elem = (SOAPBodyElement) elems.get(0);
00195             //e    = elem.getAsDOM();
00196             //String str = "soap =" + XMLUtils.ElementToString(soap.getFirstBody().getAsDOM());
00197             //System.out.println(str);
00198             //System.out.println("You typed : " +rety.toString());
00199             //String rety=(String)call.invoke(new Object[]{session});
00200             
00201             System.out.println("\nConnection Return: " + connret);
00202                         System.out.println("\nResult Set Return: " + resultret);
00203                         System.out.println("\nQuery Return: " + queryret);
00204                         //System.out.println("\nExecute Query Return: " + stts);
00205                         //System.out.println("\nResult Set: " + rs);
00206             long after = System.currentTimeMillis();
00207             
00208             long time = after-before;
00209             System.out.println("\nTime taken = "+ time);
00210             
00211         } catch (Exception e) {
00212             System.err.println(e.toString());
00213             e.printStackTrace();
00214         }
00215     }
00216 }