CAPRI Analyse

Standard assessment mode: Expert version

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Target file. (Target to be compared to):

Unbound files. (Files containing unbound structures):

Models files. (Files containing prediction structures):

Advanced parameters

Target options

Target options:
Detect symmetry in unbounds:
Lenience factor for symmetric chain scores:		between 0.5 and 1.0
Invert symmetry-selected chains:
Perform water analysis:
Filter on structurally invariant residues:
Filter on conserved residues:

Interface distance options

Interface distance options:
Distance defining interface residues:
Distance defining contact residues:
Distance defining clashing residues:

Fitting options

Fitting options:
Bound:
Ignore:
Threshold:
Distance:
Identity:		percentage
Rms:
Rms mass:

Other parameters

Other parameters:
Structural alignment method:
Sofist clustering option:
Sofist maximum RMS aligned structures:
Sofist segment pairs:
Sofist min fraction aligned SS elements:		percentage
How many models per file to evaluate at most:
Allow automatic chain splitting:
Use strict chain checking:

Default parameters

Standard assessment:

Parameter	Value
filter Turn on filter on conserved and structurally invariant residues throughout predictions	True
interface Distance defining interface residues	10.0
contact Distance defining contact residues	5.0
clash Distance defining clashing residues	3.0
identity Minimum required sequence identity and presence	70.0
rms RMS fit on receptor or receptor interface, mass-weighted	receptor
sofist SOFIST options (CLUS, RMS, RMS, PERCENTAGE)	0,4.0,2.0,70.0

Peptide assessment:

Parameter	Value
filter Turn on filter on conserved and structurally invariant residues throughout predictions	True
interface Distance defining interface residues	8.0
contact Distance defining contact residues	4.0
clash Distance defining clashing residues	3.0
identity Minimum required sequence identity and presence	70.0
rms RMS fit on receptor or receptor interface, mass-weighted	receptor
sofist SOFIST options (CLUS, RMS, RMS, PERCENTAGE)	0,4.0,2.0,70.0
peptide Minimum identity required. Use of this flag implies CAPRI defaults.	90.0