7bem

X-ray diffraction
2.52Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-209698 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
COVOX-269 Vh domain Chain: H
Molecule details ›
Chain: H
Length: 135 amino acids
Theoretical weight: 13.95 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
COVOX-269 Vl domain Chain: L
Molecule details ›
Chain: L
Length: 149 amino acids
Theoretical weight: 15.55 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Spike protein S1 Chain: E
Molecule details ›
Chain: E
Length: 205 amino acids
Theoretical weight: 23.15 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 333-528; Coverage: 16%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, FUC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P6222
Unit cell:
a: 173.614Å b: 173.614Å c: 120.642Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.218 0.217 0.247
Expression system: Homo sapiens