› 7bdz

X-ray diffraction
1.94Å resolution

X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (1)

Released:
DOI: 10.2210/pdb7bdz/pdb
PDB entry 7bdz coloured by chain, front view.
PDB entry 7bdz coloured by chain, side view.
PDB entry 7bdz coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Unusual Structural Features in the Adduct of Dirhodium Tetraacetate with Lysozyme.
Loreto D, Ferraro G, Merlino A
Int J Mol Sci 22 (2021)
PMID: 33540880

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: AAA
Molecule details ›
Chain: AAA
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family

Ligands and Environments

4 bound ligands:
Ligand NO3 9 x NO3
Ligand ACT 7 x ACT
Ligand EDO 2 x EDO
Ligand RH 4 x RH
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P43212
Unit cell:
a: 77.964Å b: 77.964Å c: 37.291Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.159 0.156 0.217

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Citations

6 citation in other articles

Multiple and Variable Binding of Pharmacologically Active Bis(maltolato)oxidovanadium(IV) to Lysozyme.
Ferraro et al. (2022)
5 more

1 mention without citation

Unusual Structural Features in the Adduct of Dirhodium Tetraacetate with Lysozyme.
Loreto et al. (2021)