› 6xnd

X-ray diffraction
1.58Å resolution

Avidin-Biotin-Phenol

Released:
DOI: 10.2210/pdb6xnd/pdb
PDB entry 6xnd coloured by chain, front view.
PDB entry 6xnd coloured by chain, side view.
PDB entry 6xnd coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
A Ligand-Directed Nitrophenol Carbonate for Transient in situ Bioconjugation and Drug Delivery
Burt AJ, Ahmadvand P, Opp LK, Ryan AT, Kang C, Mancini RJ
ChemMedChem 15 2004-2009 (2020)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136083 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Avidin Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 128 amino acids
Theoretical weight: 14.35 KDa
Source organism: Gallus gallus
Expression system: Gallus gallus
UniProt:
  • Canonical: P02701 (Residues: 25-152; Coverage: 100%)
Gene name: AVD
Sequence domains: Avidin family

Ligands and Environments

2 bound ligands:
Ligand NAG 4 x NAG
Ligand V8M 4 x V8M
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.2
Spacegroup: P21
Unit cell:
a: 46.526Å b: 79.254Å c: 74.683Å
α: 90° β: 105.46° γ: 90°
R-values:
R R work R free
0.235 0.234 0.272
Expression system: Gallus gallus

Quick links