› 6vrs

Electron Microscopy
2.7Å resolution

Single particle reconstruction of glucose isomerase from Streptomyces rubiginosus based on data acquired in the presence of substantial aberrations

Released:
DOI: 10.2210/pdb6vrs/pdb
PDB entry 6vrs coloured by chain, front view.
PDB entry 6vrs coloured by chain, side view.
PDB entry 6vrs coloured by chain, top view.
Source organism: Streptomyces rubiginosus
Primary publication:
High-resolution cryo-EM reconstructions in the presence of substantial aberrations
Bromberg R, Guo Y, Borek D, Otwinowski Z
IUCrJ 7 445-452 (2020)
Related structures: EMD-21371

Function and Biology Details

Reaction catalysed: 
Alpha-D-xylopyranose = alpha-D-xylufuranose
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-150204 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Xylose isomerase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 388 amino acids
Theoretical weight: 43.28 KDa
Source organism: Streptomyces rubiginosus
UniProt:
  • Canonical: P24300 (Residues: 1-388; Coverage: 100%)
Gene name: xylA
Sequence domains: Xylose isomerase-like TIM barrel

Ligands and Environments

1 bound ligand:
Ligand MN 8 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.7Å
Relevant EMDB volumes: EMD-21371

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