› 6ptl

X-ray diffraction
2.5Å resolution

Structure of the self-association domain of the chromatin looping factor LDB1

Released:
DOI: 10.2210/pdb6ptl/pdb
PDB entry 6ptl coloured by chain, front view.
PDB entry 6ptl coloured by chain, side view.
PDB entry 6ptl coloured by chain, top view.
Source organism: Mus musculus
Entry authors: Macindoe I, Silva A, Guss JM, Mackay JP, Matthews JM

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-159750 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
LIM domain-binding protein 1 Chain: A
Molecule details ›
Chain: A
Length: 192 amino acids
Theoretical weight: 22.61 KDa
Source organism: Mus musculus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P70662 (Residues: 50-236; Coverage: 46%)
Gene names: Ldb1, Nli
Sequence domains: LIM-domain binding protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2, AUSTRALIAN SYNCHROTRON BEAMLINE MX1
Spacegroup: P3221
Unit cell:
a: 81.869Å b: 81.869Å c: 66.828Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.246 0.245 0.271
Expression system: Escherichia coli BL21(DE3)

Quick links