6kez

X-ray diffraction
3.5Å resolution

Crystal structure of GAPDH/CP12/PRK complex from Arabidopsis thaliana

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
PDBe Complex ID:
PDB-CPX-150562 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 339 amino acids
Theoretical weight: 36.59 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: P25856 (Residues: 61-396; Coverage: 85%)
Gene names: At3g26650, GAPA, GAPA1, MLJ15.4, MLJ15_5
Sequence domains:
Phosphoribulokinase, chloroplastic Chains: I, J, K, L
Molecule details ›
Chains: I, J, K, L
Length: 352 amino acids
Theoretical weight: 39.51 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: P25697 (Residues: 47-395; Coverage: 88%)
Gene names: At1g32060, T12O21.4
Sequence domains: Phosphoribulokinase / Uridine kinase family
Calvin cycle protein CP12-2, chloroplastic Chains: M, N, O, P
Molecule details ›
Chains: M, N, O, P
Length: 80 amino acids
Theoretical weight: 8.54 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9LZP9 (Residues: 55-131; Coverage: 59%)
Gene names: At3g62410, CP12-2, T12C14.110
Sequence domains: CP12 domain

Ligands and Environments


Cofactor: Ligand NAD 8 x NAD
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21
Unit cell:
a: 92.813Å b: 204.734Å c: 157.036Å
α: 90° β: 106.88° γ: 90°
R-values:
R R work R free
0.246 0.246 0.287
Expression system: Escherichia coli