6hku

X-ray diffraction
1.98Å resolution

Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with sialylated precision glycooligomers

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122821 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Capsid protein VP1 Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 272 amino acids
Theoretical weight: 30.22 KDa
Source organism: Trichodysplasia spinulosa-associated polyomavirus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: E2ESL7 (Residues: 33-304; Coverage: 73%)
Gene name: VP1
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

Carbohydrate polymer : NEW Components: SIA, GAL
Carbohydrate polymer : NEW Components: SIA, GAL, GLC
2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P212121
Unit cell:
a: 139.277Å b: 146.16Å c: 150.413Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.185 0.185 0.23
Expression system: Escherichia coli BL21(DE3)