6esb

Electron Microscopy
3.4Å resolution

BK polyomavirus + 20 mM GT1b oligosaccharide

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 420-mer (preferred)
PDBe Complex ID:
PDB-CPX-136557 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Major capsid protein VP1 Chains: 1, 2, 3, 4, 5, 6
Molecule details ›
Chains: 1, 2, 3, 4, 5, 6
Length: 361 amino acids
Theoretical weight: 40.05 KDa
Source organism: Betapolyomavirus hominis
UniProt:
  • Canonical: P03088 (Residues: 2-362; Coverage: 100%)
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus
Minor capsid protein VP2 Chain: 7
Molecule details ›
Chain: 7
Length: 350 amino acids
Theoretical weight: 38.25 KDa
Source organism: Betapolyomavirus hominis
UniProt:
  • Canonical: P03094 (Residues: 2-351; Coverage: 100%)
Sequence domains: Polyomavirus coat protein

Ligands and Environments

Carbohydrate polymer : NEW Components: SIA
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.4Å
Relevant EMDB volumes: EMD-3944