› 6e0d

X-ray diffraction
2.24Å resolution

X-ray structure of a complex of thaumatin with xylene cyanol

Released:
DOI: 10.2210/pdb6e0d/pdb
PDB entry 6e0d coloured by chain, front view.
PDB entry 6e0d coloured by chain, side view.
PDB entry 6e0d coloured by chain, top view.
Source organism: Thaumatococcus daniellii
Primary publication:
Investigation into the binding of dyes within protein crystals.
McPherson A, Larson SB
Acta Crystallogr F Struct Biol Commun 74 593-602 (2018)
PMID: 30198893

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136331 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Thaumatin I Chain: A
Molecule details ›
Chain: A
Length: 235 amino acids
Theoretical weight: 25.48 KDa
Source organism: Thaumatococcus daniellii
UniProt:
  • Canonical: P02883 (Residues: 1-235; Coverage: 100%)
Sequence domains: Thaumatin family
Structure domains: Thaumatin

Ligands and Environments

2 bound ligands:
Ligand TLA 1 x TLA
Ligand XXX 1 x XXX
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P41212
Unit cell:
a: 58.654Å b: 58.654Å c: 151.586Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.127 0.125 0.164

Quick links

Citations

3 citation in other articles

Stacked binding of a PET ligand to Alzheimer's tau paired helical filaments.
Merz et al. (2023)
2 more

1 mention without citation

Investigation into the binding of dyes within protein crystals.
McPherson et al. (2018)