› 6bph

X-ray diffraction
1.85Å resolution

Crystal structure of the chromodomain of RBBP1

Released:
DOI: 10.2210/pdb6bph/pdb
PDB entry 6bph coloured by chain, front view.
PDB entry 6bph coloured by chain, side view.
PDB entry 6bph coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal structure of chromo barrel domain of RBBP1.
Lei M, Feng Y, Zhou M, Yang Y, Loppnau P, Li Y, Yang Y, Liu Y
Biochem Biophys Res Commun 496 1344-1348 (2018)
PMID: 29408527

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-151435 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
AT-rich interactive domain-containing protein 4A Chain: A
Molecule details ›
Chain: A
Length: 69 amino acids
Theoretical weight: 8.07 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P29374 (Residues: 568-635; Coverage: 5%)
Gene names: ARID4A, RBBP1, RBP1
Sequence domains: RNA binding activity-knot of a chromodomain
Structure domains: SH3 type barrels.

Ligands and Environments

1 bound ligand:
Ligand UNX 17 x UNX
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU FR-E SUPERBRIGHT
Spacegroup: P43212
Unit cell:
a: 41.493Å b: 41.493Å c: 81.349Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.207 0.206 0.226
Expression system: Escherichia coli

Quick links

Citations

2 citation in other articles

Missense Variants Reveal Functional Insights Into the Human ARID Family of Gene Regulators.
Deák et al. (2022)
1 more

3 mentions without citation

Classification and energetics of the base-phosphate interactions in RNA.
Zirbel et al. (2009)
2 more