› 6bjy

X-ray diffraction
3.46Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137107 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
Nucleoprotein Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 421 amino acids
Theoretical weight: 47.33 KDa
Source organism: Vesicular stomatitis Indiana virus strain San Juan
Expression system: Escherichia coli
UniProt:
  • Canonical: P03521 (Residues: 2-422; Coverage: 100%)
Gene name: N
Sequence domains: Rhabdovirus nucleocapsid protein
Structure domains:
RNA (45-MER) Chain: R
Molecule details ›
Chain: R
Length: 45 nucleotides
Theoretical weight: 13.73 KDa
Source organism: Vesicular stomatitis Indiana virus
Expression system: Escherichia coli

Ligands and Environments

2 bound ligands:
Ligand DV4 1 x DV4
Ligand IUM 15 x IUM
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Unit cell:
a: 75.48Å b: 165.48Å c: 234.46Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.268 0.266 0.311
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Nucleocapsid Structure of Negative Strand RNA Virus.
Luo et al. (2020)
4 other articles

1 mention without citation

Synergistic antiviral activity of Lactobacillus acidophilus and Glycyrrhiza glabra against Herpes Simplex-1 Virus (HSV-1) and Vesicular Stomatitis Virus (VSV): experimental and In Silico insights.
Elebeedy et al. (2023)